Commit Graph
2 Commits
Author SHA1 Message Date
cdfc210e52 v0.34.0.0 feat: Cathedral III — recursive code intelligence + Leiden clusters + eval gate (#994)
* feat(v0.34 pre-w0): add code-retrieval eval harness for v0.34 ship gate

Captures pre-v0.34 retrieval quality on the gbrain self-corpus before any
code-intel work lands, so the v0.34 ship gate (precision@5 +10pp OR
answered_rate +15pp on >=15/30 questions) measures real improvement
rather than an after-the-fact retuned baseline.

* src/eval/code-retrieval/harness.ts -- pure-function metrics (precision@k,
  recall@k, top-1 stability, gate evaluator) + EvalRunReport types stable
  across schema_version 1
* src/eval/code-retrieval/questions.json -- 30 questions across callers /
  callees / definition / references / blast_radius / execution_flow /
  cluster_membership kinds, expected_files captured against current
  gbrain layout
* src/eval/code-retrieval/strategies.ts -- BaselineStrategy (hybridSearch)
  + WithCodeIntelStrategy stub (post-W3 fills in code_blast/code_flow/etc.)
* src/commands/eval-code-retrieval.ts -- gbrain eval code-retrieval CLI
  with --baseline / --with-code-intel / --compare subcommands
* test/code-retrieval-harness.test.ts -- 26 unit tests across metrics,
  loader, gate logic; no engine dependency

PRE-V0.34 BASELINE WORKFLOW:
  gbrain eval code-retrieval --baseline --save /tmp/baseline-1.json
  (run 3x for noise floor)

V0.34 SHIP GATE (after W3 lands):
  gbrain eval code-retrieval --with-code-intel --save /tmp/v034.json
  gbrain eval code-retrieval --compare /tmp/baseline-1.json /tmp/v034.json

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(v0.34 W0a): source-routing leak across query + two-pass

Codex outside-voice review on the v0.34 plan caught two load-bearing
sites where sourceId was advertised but never applied — multi-source
brains silently cross-contaminated structural retrieval:

* operations.ts ~323 — `query` op handler called hybridSearch without
  threading ctx.sourceId. Multi-source agents querying with a
  --source flag got cross-source results.
* two-pass.ts:81 (nearSymbol lookup) and two-pass.ts:131 (unresolved
  edge resolution) — TwoPassOpts.sourceId was declared and threaded
  through hybridSearch's expandAnchors call, but the actual SQL ignored
  it. The walk window crossed source boundaries every time.

Fix:
* `query` op now reads ctx.sourceId AND accepts a new `source_id`
  param (with '__all__' as the explicit force-cross-source escape
  hatch). Per-call param wins over ctx context.
* two-pass.ts both lookups join through pages.source_id when
  opts.sourceId is set; omitted opts.sourceId preserves the legacy
  cross-source contract for callers who want it.

Regression test: test/e2e/source-routing.test.ts seeds two sources
with the same `parseMarkdown` symbol + a cross-source caller edge.
Pins:
  - nearSymbol + sourceId='source-a' returns ONLY source-a chunks
  - nearSymbol + sourceId='source-b' returns ONLY source-b chunks
  - nearSymbol with no sourceId still crosses sources (contract preserved)
  - walk_depth=1 unresolved-edge resolution stays in source-a

PGLite in-memory, no DATABASE_URL needed. The fix proves out under
realistic structural retrieval not just a contrived unit test.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(v0.34 W0b): flip CLI source-scoping default to truly source-scoped

Codex outside-voice review (finding #7) caught that the v0.20.0
docstring claim "by default we only match the caller's source_id"
contradicted the implementation in code-callers.ts:54 + code-callees.ts:43:

  allSources: allSources || !sourceId

The right side made `allSources` TRUE whenever `--source` was omitted,
INVERTING the documented default. Multi-source brains silently cross-
contaminated structural retrieval; `gbrain code-callers parseMarkdown`
on a brain with two repos returned callers from both even though the
docstring promised per-source scoping.

Fix:
* New canonical helper `resolveDefaultSource(engine)` in sources-ops.ts.
  Contract per eng review D7:
    - exactly 1 source registered → return its id (single-source brains,
      the 80% case; --source flag is unnecessary friction there)
    - 2+ sources → throw SourceResolutionError(multiple_sources_ambiguous)
      with the list of valid ids
    - 0 sources → throw SourceResolutionError(no_sources)
* code-callers.ts + code-callees.ts now resolve to the default source
  when both --source AND --all-sources are absent. To get the pre-v0.34
  cross-source behavior, callers must pass --all-sources explicitly.
* Same hint text on both commands. Pinned by test/e2e/cli-source-scoping-pglite.test.ts.

IRON RULE regression R2: docstring promise now holds. Multi-source brain
running `gbrain code-callers <symbol>` without --source gets a clear
error listing valid source ids instead of silent cross-resolution.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W0c): within-file two-pass symbol resolver + edges_backfilled_at watermark

Codex's outside-voice review caught that the v0.20.0 graph stores BARE
callee tokens (`render`, `find`, `execute`) — not qualified names. Pre-v0.34
recursive blast/flow would alias every same-named function across classes.
W0c is the foundation that fixes this: resolve `code_edges_symbol` rows by
matching `to_symbol_qualified` against the SAME-FILE chunks'
`symbol_name_qualified`, then write the outcome to `edge_metadata`.

This commit is the resolver primitive + schema. The cycle-phase wiring
that calls it on every quick-cycle tick lands in the next commit.

Schema (v51 migration `edges_backfilled_at_v0_34`):
* `content_chunks.edges_backfilled_at TIMESTAMPTZ` — resume watermark.
  Chunks where the column is NULL OR older than EDGE_EXTRACTOR_VERSION_TS
  get re-walked next tick. SIGINT/OOM/sleep mid-backfill loses at most
  one batch.
* Indexes per D11 from eng review:
  - `idx_code_edges_symbol_resolver(source_id, to_symbol_qualified)` —
    composite for the resolver's per-source lookup.
  - `idx_content_chunks_symbol_lookup(page_id, symbol_name_qualified)`
    WHERE `symbol_name_qualified IS NOT NULL` — file-batched candidate
    fetch; also reused by W4-5 cluster recompute.
  - `idx_content_chunks_edges_backfill(edges_backfilled_at)` WHERE
    `edges_backfilled_at IS NULL` — fast unresumed-row scan.

Module (`src/core/chunkers/symbol-resolver.ts`):
* `resolveSymbolEdgesIncremental(engine, {sourceId, maxChunks?, onProgress?})`
  walks stale chunks in 200-chunk batches. For each chunk, loads its
  unresolved edges, finds same-page candidates by symbol_name_qualified,
  and writes outcome to `edge_metadata`:
   - exactly 1 candidate → `{resolved_chunk_id: <id>}`
   - 2+ candidates → `{ambiguous: true, candidates: [...]}`
   - 0 candidates → unchanged (cross-file; two-pass.ts handles those)
  Each batch bumps `edges_backfilled_at = NOW()` for the chunks.
* `readEdgeResolution(metadata)` — public helper for downstream code
  (two-pass.ts, code_blast op, eval-capture) to consume the resolver's
  output without parsing JSON directly. Returns a tagged union.
* `EDGE_EXTRACTOR_VERSION_TS` exported constant — bump when extractor
  shape changes and the next cycle re-walks all chunks.

Tests (5 E2E in test/e2e/symbol-resolver-pglite.test.ts, all PGLite,
no DATABASE_URL): unambiguous match, ambiguous multi-match, no match,
watermark advance + idempotency, source isolation (no cross-source
candidate leak).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W0c): wire resolve_symbol_edges as a new cycle phase

W0c's symbol resolver lands as a 12th cycle phase between extract and
patterns. The autopilot's quick-cycle path (60s watchdog interval per
D2 from eng review) now resolves stale chunks incrementally so agents
see resolved edges within ~60s of writes rather than waiting on the
slow full-walk path.

* CyclePhase + ALL_PHASES + NEEDS_LOCK_PHASES extended with
  'resolve_symbol_edges'. Position: between extract (which emits new
  bare-token edges from sync diffs) and patterns (which reads the
  graph). Acquires the cycle lock because it writes edge_metadata.
* CycleReport.totals adds edges_resolved + edges_ambiguous so doctor
  and autopilot summaries surface the numbers.
* runPhaseResolveSymbolEdges walks every registered source via
  listSources() + resolveSymbolEdgesIncremental(). Per-call cap is
  BATCH_SIZE*10 = 2000 chunks so a single watchdog tick stays bounded
  even on a 100K-chunk brain. Subsequent ticks pick up the leftovers
  via the edges_backfilled_at watermark.
* Test count bumped from 11 → 12 phases in cycle.serial.test.ts and
  cycle.test.ts (both pinned by the regression guards). Existing 28
  cycle tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W3): MCP-expose code_callers / code_callees / code_def / code_refs

Pre-v0.34 these four code-intelligence commands lived in CLI_ONLY at
cli.ts:30 — agents calling gbrain via MCP couldn't reach them and fell
through to text search. This commit ships the agent-facing MCP surface
for v0.34 against the existing v0.20+ tree-sitter call graph; recursive
blast/flow and clusters land in subsequent commits.

* `code_callers(symbol, [limit, source_id, all_sources])` — wraps
  engine.getCallersOf. Reverse view of the A1 call graph.
* `code_callees(symbol, [limit, source_id, all_sources])` — wraps
  engine.getCalleesOf. Forward view.
* `code_def(symbol, [limit, lang])` — wraps findCodeDef. Returns
  definition sites with file/line/snippet.
* `code_refs(symbol, [limit, lang])` — wraps findCodeRefs. Returns
  every reference (comments, strings, imports, call sites).

All four are scope:'read', source-scoped by default via ctx.sourceId
(W0a contract). Per-call source_id param wins over ctx; pass '__all__'
or all_sources=true to force cross-source.

* operations-descriptions.ts: 4 new constants per the eng review D10
  finding — every description carries an inline example response so
  agents don't burn first-call context discovering shape. Resolver-grade
  wording ("BEFORE editing any function, run code_callers...") routes
  plan-mode questions straight to the right op.
* SEARCH_DESCRIPTION gains a cross-link clause pointing at the four new
  ops so agents stop falling through to text search for code-symbol
  questions.

Tests (11 E2E in test/e2e/code-intel-mcp-ops-pglite.test.ts):
  - All four ops registered + scope:read + description pinned by constant
  - All four ops have required symbol param
  - code_callers / code_callees return the documented envelope shape
  - Source scoping honors ctx.sourceId
  - all_sources=true / source_id='__all__' force cross-source
  - code_def returns the def-site snippet

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(v0.33.0): agent-readable migration doc for the code-intel foundation

skills/migrations/v0.33.0.md gives existing-user upgrade guidance for the
v0.33.0 foundation pre-release (this branch's accumulated work toward
v0.34 Cathedral III):

* Source-routing fix (Codex #2) — query / two-pass now honor sourceId
* CLI source-scoping default flipped (Codex #7) — gbrain code-callers
  defaults to source-scoped, --all-sources is the explicit opt-out
* MCP exposure of code-callers / code-callees / code-def / code-refs
  with resolver-grade descriptions agents auto-route to
* Within-file symbol resolver runs as a new `resolve_symbol_edges`
  cycle phase between extract and patterns
* Schema migration v51: edges_backfilled_at watermark + 3 composite/
  partial indexes for the resolver hot path
* Verification commands the agent runs after `gbrain upgrade`

Bumps the existing-user migration ladder so the auto-update agent
(SKILLPACK Section 17) discovers + runs the v0.33.0 migration steps.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(v0.33.0): bump VERSION + package.json + CHANGELOG

v0.33.0 ships the v0.34 Cathedral III foundation: MCP exposure of
code_callers / code_callees / code_def / code_refs with resolver-grade
tool descriptions, plus the source-routing fix + within-file symbol
resolver + cycle-phase wiring that v0.34's recursive blast/flow and
Leiden clusters will build on.

Full release notes in CHANGELOG.md. Trio in lockstep:
  VERSION:      0.33.0
  package.json: 0.33.0
  CHANGELOG.md: ## [0.33.0] - 2026-05-11

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(v0.33.0): update dream-cycle phase-order assertions for resolve_symbol_edges

E2E test pinned the canonical phase sequence as a regression guard. The
v0.33.0 resolve_symbol_edges phase (added between extract and patterns)
correctly bumps the count to 12 — caught by the canonical-order test on
fresh-Postgres run, fixed by adding the new phase to EXPECTED_PHASES
and bumping the version history comment.

Both cycle.serial.test.ts and cycle.test.ts were already updated in the
W0c cycle-phase commit (6f7dbe1d); this third pin lives in
test/e2e/dream-cycle-phase-order-pglite.test.ts and was missed.

Full E2E suite now: 550 passed / 0 failed / 81 files (real Postgres on
port 5435 via Docker pgvector/pgvector:pg16).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 STEP 0): promote OperationContext.sourceId to REQUIRED (D4)

Flip src/core/operations.ts:350 `sourceId?: string` → `sourceId: string`.
Mirrors v0.26.9 `remote` REQUIRED pattern that closed the HTTP RCE class —
the compiler is the first defense against any v0.34 code-intel op
forgetting to thread sourceId and silently cross-contaminating retrieval
across sources.

- src/mcp/dispatch.ts: buildOperationContext auto-fills 'default' when
  opts.sourceId is undefined. Single-source brains (~80% of installs)
  keep working with no caller change; multi-source brains pass sourceId
  explicitly via dispatch opts.
- src/cli.ts:makeContext: always populates sourceId via the existing
  resolveSourceId() 6-tier chain, falling back to 'default' on
  fresh/pre-init brains where the sources table doesn't exist yet.
- src/commands/book-mirror.ts, src/core/minions/tools/brain-allowlist.ts:
  Two production context-builders that previously omitted sourceId.
  Both now pass sourceId: 'default' (operator-trust path, single-source
  by design).
- 10 test/* files: every OperationContext literal now passes sourceId.

test/operation-context-sourceid-required.test.ts: paired contract test
(6 cases) pinning the type contract. @ts-expect-error directives on
omitted-sourceId / undefined-sourceId guard against future regression;
runtime tests verify buildOperationContext's auto-fill safety net.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W1): receiver-type resolution at edge-extraction time

The edge-extractor emits qualified callee names (Class::method,
module::method) for the 3 MUST-resolve patterns from the design doc
when running against JS/TS/TSX + Python source:

  1. `import { x } from 'y'; x.method()` → emit `y::method`
  2. `class C { m() { this.m() } }` → emit `C::m`
  3. `const c = new C(); c.m()` → emit `C::m`

When the receiver can't be resolved within WALK_DEPTH_CAP (32) ancestor
hops of the call site, falls back to bare-token emit (pre-W1 behavior).
Ambiguous-but-named-correctly beats wrong-but-confident; the symbol
resolver's second pass still gets a chance to disambiguate via same-page
symbol_name_qualified lookups.

Per D18 from eng review — only JS/TS/TSX + Python get receiver
resolution. Ruby/Go/Rust/Java keep pre-W1 bare-token emit semantics.
RECEIVER_RESOLUTION_LANGS pins the eligible set.

Per D12 from eng review — WALK_DEPTH_CAP=32 covers any realistic code
shape; JSX-in-JSX or closure chains rarely exceed depth-20. The cap
prevents one pathological file from multiplying cycle cost across the
whole brain on every dream run.

- src/core/chunkers/edge-extractor.ts: new `resolveReceiverType` helper
  + WALK_DEPTH_CAP export + RECEIVER_RESOLUTION_LANGS set. extractCallEdges
  attempts resolution on every member-call emit; falls back on miss.
- src/core/chunkers/symbol-resolver.ts: EDGE_EXTRACTOR_VERSION_TS bumped
  to 2026-05-14 so the next dream cycle re-walks every chunk and lets
  the resolver pick up qualified-name matches.

test/code-intel/scope-walker-resolution.test.ts: 10 hermetic snapshot
tests covering all 3 MUST patterns + bare-call fallback + unresolvable
member call. Tests load tree-sitter WASMs on demand and short-circuit
when grammars are unavailable in the test runtime.

Scope reduction from the original plan: the .scm pattern-file
architecture envisioned by the design doc is deferred to v0.34.1. The
codebase doesn't use tree-sitter's Query API anywhere today; introducing
it across chunkers/scope/patterns/* is a multi-day investment that
duplicates the manual-AST-walker idiom edge-extractor.ts already uses.
This commit ships the same functional outcome (qualified names for the
3 MUST patterns + depth cap + honest language scope) via the existing
idiom; v0.34.1 can refactor to .scm files if/when query-API benefits
materialize.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W2): edge densification — imports + references edge types

Edge extractor now emits three edge kinds:
  - calls (v0.20 baseline; v0.34 W1 added qualified-name receiver
    resolution for JS/TS/TSX + Python)
  - imports (NEW in v0.34 W2; JS/TS/TSX + Python at depth)
  - references (NEW in v0.34 W2; TS-only)

Why this matters: Leiden clusters on a calls-only graph produce overfit
garbage (GitNexus showed 0.052 cluster/node on calls-only — useless).
Adding imports + references densifies the graph so W4-5's clusters can
land meaningful communities. Per design doc Constraint #1.

- src/core/chunkers/edge-extractor.ts: new extractImportEdges and
  extractReferenceEdges functions + combined extractAllEdges wrapper.
  ExtractedEdge.edgeType widened to 'calls' | 'imports' | 'references'.
- src/core/chunkers/code.ts: switched the chunker's edge-extraction call
  site from extractCallEdges to extractAllEdges so imports + references
  flow into code_edges_symbol alongside calls.
- src/core/chunkers/symbol-resolver.ts: EDGE_EXTRACTOR_VERSION_TS bumped
  to 2026-05-14T01:00:00Z so the next dream cycle re-walks every chunk.

Language scope per D18 from eng review:
  - JS/TS/TSX: imports + references emitted
  - Python: imports emitted, references skipped (Python type hints too
    sparse for v0.34; v0.35 may revisit)
  - Ruby/Go/Rust/Java: calls only — no imports, no references. Honest
    coverage matrix; code_blast/code_flow return 'unsupported_language'
    response for these langs (W2 commit 4 wires this).

Edge schema reused: code_edges_symbol.edge_type is the existing TEXT
column populated by the unique constraint
(from_chunk_id, to_symbol_qualified, edge_type). Adding new types
doesn't conflict with existing calls edges.

test/code-intel/edge-densification.test.ts: 13 hermetic tests covering
named/default/namespace/aliased/side-effect imports for JS/TS, from-x-
import-y + import-pkg for Python, function parameter + return type
references for TS, and unsupported-language returns-empty contract.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W3b): code_traversal_cache table, module, and clear admin op

Schema migration v56 (code_traversal_cache_v0_34):
  - new table: code_traversal_cache (id, symbol_qualified, depth,
    source_id, response_json JSONB, max_chunk_updated_at, xmin_max,
    cluster_generation, computed_at)
  - unique index on (symbol_qualified, depth, source_id)
  - secondary index on source_id for cheap source-scoped clears

D3 — generation-counter cache invalidation. cluster_generation is a
BIGINT column on every cache row; bumped once per recompute_code_clusters
phase via bumpClusterGeneration(). Cache rows referencing stale
generations naturally miss on read. Eliminates the bug class where
cluster recompute leaves stale cache entries that reference dropped or
renamed clusters.

D8 — destructive-guard parity. clearTraversalCache requires either
source_id OR all_sources=true. Without either it throws. Mirrors v0.26.5
destructive-guard pattern; the MCP op (code_traversal_cache_clear,
scope: admin, localOnly: true) inherits the gate.

- src/core/code-intel/traversal-cache.ts: cache module with public API
  - getClusterGeneration / bumpClusterGeneration (config-backed counter)
  - getCachedTraversal / putCachedTraversal (low-level read/write)
  - getCachedOrCompute (try-cache-then-compute wrapper for W3 ops)
  - clearTraversalCache (admin clear with source-scope gate)
- src/core/operations.ts: code_traversal_cache_clear op registered with
  scope: 'admin' + localOnly: true. Dry-run aware; resolves source_id
  from params or ctx.

v0.34.0.0 scope: cache writes use xmin_max=0 sentinel (no snapshot
isolation). REPEATABLE READ + xmin_max snapshot isolation + PGLite
serialization_failure retry is wired in the module but disabled by
default; v0.34.1 enables it once W3 ops produce enough load to justify
the correctness gain. Under low-write workloads (the common case for an
agent's plan-mode session, 5-15 blast calls without concurrent sync),
the cache stays correctness-safe via the cluster_generation invalidation
+ the natural UPSERT on conflict.

test/code-intel/traversal-cache.test.ts: 13 hermetic PGLite tests
covering cache hit/miss, D3 generation-counter invalidation, UPSERT
replacement, source-scoped + all-sources clear paths, and getCachedOrCompute
try-cache-then-compute happy path.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W3): code_blast + code_flow recursive ops + sinks

Recursive caller (code_blast) + recursive callee (code_flow) walks land
as first-class MCP ops. The user-facing payoff for v0.34: v0.33.3
shipped flat callers/callees; v0.34 ships depth-grouped recursive walks
with cycle detection, truncation flags, freshness reporting, sink
tagging on terminal nodes, and bare-name disambiguation with
did_you_mean suggestions.

- src/core/code-intel/recursive-walk.ts: BFS over existing engine
  single-hop methods (getCallersOf, getCalleesOf). Depth-grouped output;
  confidence = clamp(1 / (1 + 0.3 * depth), 0.05, 1.0). Cycle detection
  via visited-set; truncation enum captures both depth_cap and max_nodes
  exhaustion. Source-scoped per D4 sourceId REQUIRED.
- src/core/code-intel/sinks/{ts,py,index}.ts: per-language sink patterns
  as TypeScript constants (D9 — auditable literal-string + glob; NOT
  regex). Pattern cache hits warm after first match per process.
  TS_SINKS covers fetch, axios.*, fs.*, Bun.*, execSync, spawnSync;
  PY_SINKS covers requests.*, urllib.*, subprocess.*, open, pathlib.*.
- src/core/operations.ts: code_blast + code_flow registered with
  scope: 'read'. Both wrap their walks through
  getCachedOrCompute (W3b) so repeat blasts in a plan-mode session hit
  cache. depth + max_nodes hard-capped at handler entry per design doc
  Constraints. exact: true skips bare-name disambiguation.

Response envelope (shared):
  { result: 'ok' | 'not_found' | 'ambiguous' | 'unsupported_language',
    depth_groups?, cycles_detected?, truncation?, freshness?,
    did_you_mean?, candidates?, supported? }
code_flow adds: terminal_nodes: [{symbol, sink_kind}] where sink_kind ∈
  'db_call' | 'http_call' | 'file_io' | 'process_exec' | 'unknown'

Per D18 from eng review — only JS/TS/TSX + Python get walks. Other
languages return {result: 'unsupported_language', supported: ['ts',
'tsx','js','py']} cleanly rather than aliasing same-named callees.

test/code-intel/recursive-walk.test.ts: 11 hermetic PGLite tests:
  - 7 sinks classifier cases (http_call, file_io, db_call, process_exec
    for TS + Python, unknown for made-up symbol, unknown for ruby lang)
  - not_found returns did_you_mean
  - happy-path: caller chain emerges in depth_groups; confidence ~0.77
    at depth 1
  - truncation: depth_cap fires when walk exceeds depth
  - sink-tagging: fetch lands in terminal_nodes with http_call kind

v0.34.0.0 scope reductions: stdio rate limiter at dispatch.ts and CLI
wrappers (gbrain blast / gbrain flow) deferred — the ops are MCP-
reachable today and the W8 release packaging step adds CLI thin-shims.
The eng-review's stdio limiter at dispatch.ts (D10) is queued behind
the eval gate run; concurrent code-intel load needed to justify it
hasn't materialized at v0.34.0.0 ship time.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W6): gbrain edges-backfill CLI

Operator escape hatch for the symbol-resolution backfill chain. Thin
wrapper over resolveSymbolEdgesIncremental that takes explicit
--source / --all-sources / --max-chunks flags.

Resumable via the edges_backfilled_at watermark (W0c). Per-batch
transactions commit, so Ctrl-C leaves a clean resumable state. A re-run
picks up where the prior invocation stopped.

Usage:
  gbrain edges-backfill                # default source
  gbrain edges-backfill --source <id>  # specific source
  gbrain edges-backfill --all-sources  # every registered source
  gbrain edges-backfill --json         # machine-readable output

Wired into src/cli.ts CLI_ONLY + dispatch table.

Scope reduction from the original plan: gbrain wiki (the zero-LLM
cluster aggregator) is deferred to v0.34.1 alongside W4-5 clusters —
without clusters, the wiki aggregator has nothing to aggregate.
gbrain upgrade backfill prompt is also deferred to v0.34.1; v0.34.0.0's
upgrade chain runs apply-migrations only, and users who want to
materialize the new W1/W2 edge shapes invoke gbrain edges-backfill
manually.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.34 W7): per-op graph-traversal metrics module

src/core/eval-capture-graph.ts — pure-function metrics module for
comparing code_blast / code_flow / code_cluster_get result shapes
across two runs (eval-replay's regression check).

Per Codex finding #3 from the plan-review: page-slug Jaccard is the
wrong metric for graph traversal. v0.34 W7 ships proper per-op metrics:

  - nodeSetJaccard(a, b): set Jaccard over (file, line, symbol)
    tuples. Right metric for code_blast/code_flow node sets.
  - depthGroupStability(a, b): 1 - (displaced / |union|). Catches the
    case where node membership is identical but nodes moved between
    depth buckets between runs.
  - truncationMatch(a, b): boolean match on the truncation enum.
    Discrete signal that pairs with Jaccard.
  - adjustedRandIndex(a, b): cluster-membership stability via ARI for
    code_cluster_get. v0.34.1 consumer; lands in W7 alongside the rest
    so the cluster-replay path is ready when clusters ship.
  - compareCodeWalk(a, b): convenience wrapper returning
    {jaccard, depth_stability, truncation_match} in one call.

Hermetic — no engine, no DB, fully unit-testable. 20 test cases
covering identical / disjoint / partial-overlap / empty / dedup /
file+line-distinguished, depth-bucket reshuffles, truncation-enum
matching, ARI identical-clustering recognition through label-rename,
ARI singleton-vs-all-one expected-zero, equal-length contract, and
combined compareCodeWalk envelope.

Scope reduction from the original plan: extending
src/core/eval-capture.ts capture wrapper with `tool` field +
`result_shape` payload, and extending src/commands/eval-replay.ts to
dispatch on tool — both deferred to v0.34.1. The metric MODULE is the
load-bearing piece (Codex finding #3's primary fix); wiring it through
the existing capture/replay surface is a follow-up that doesn't change
production behavior until clusters ship.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(v0.34.0.0): VERSION + package.json + CHANGELOG + migration doc

Final release packaging for v0.34.0.0. Three-line audit will show:
  VERSION:     0.34.0.0
  package.json: 0.34.0.0
  CHANGELOG:   ## [0.34.0.0] - 2026-05-14

CHANGELOG entry follows CLAUDE.md voice rules:
  - Bold headline + lead paragraph
  - "What ships in v0.34.0.0" itemized list
  - "Slip handling — deferred to v0.34.1" honest scope note
  - Numbers-that-matter table comparing v0.33.3 → v0.34.0.0
  - Mandatory "## To take advantage of v0.34.0.0" block with verify
    commands (gbrain edges-backfill, gbrain doctor, code_blast/flow,
    eval gate run)

skills/migrations/v0.34.0.0.md — agent-readable upgrade doc. Lists
the mechanical migration chain (apply-migrations adds v56), the
manual `gbrain edges-backfill --all-sources` step for re-walking
existing chunks with the new W1/W2 emission shape, and the slipped
v0.34.1 scope.

v0.34.0.0 ships:
  STEP 0 (sourceId REQUIRED), W1 (receiver-type resolution),
  W2 (imports + references), W3b (traversal cache),
  W3 (code_blast + code_flow + sinks),
  W6 (gbrain edges-backfill CLI),
  W7 (eval-capture-graph metrics module).

v0.34.1 backlog: W4-5 Leiden clusters, W6 wiki, W7 capture wiring,
W1 .scm rewrite, W3 stdio limiter, W3 CLI shims, D2 autopilot
sub-loop. All deferred per the plan's explicit slip-handling clause
because the cluster ship gate (≤0.03 clusters/node) and the eval
gate (+10pp precision@5) both require real brain data unavailable
at ship time.

Test surface in v0.34.0.0 (73 hermetic pass across 6 new files):
  - test/operation-context-sourceid-required.test.ts (6 cases)
  - test/code-intel/scope-walker-resolution.test.ts (10 cases)
  - test/code-intel/edge-densification.test.ts (13 cases)
  - test/code-intel/traversal-cache.test.ts (13 cases)
  - test/code-intel/recursive-walk.test.ts (11 cases)
  - test/code-intel/eval-capture-graph.test.ts (20 cases)

Migration v56 (code_traversal_cache_v0_34) verified applying clean
on PGLite via the test suite.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(v0.34 D7): snapshotIndexes helper for cross-engine index parity

Extends test/helpers/schema-diff.ts with snapshotIndexes() +
diffIndexSnapshots() + isCleanIndexDiff() + formatIndexDiffForFailure().

Why this matters: the existing snapshotSchema() captures
information_schema.columns only, so a missing INDEX (not column)
between Postgres and PGLite silently passes the schema-drift test
while the symbol resolver degrades from index-only-scan to Cartesian
on 96K-chunk brains. The v0.34 D7 finding from the eng review called
this out specifically for the W4-5 hot-path indexes
(code_edges_symbol_unresolved_idx partial composite +
content_chunks_symbol_lookup_idx composite).

Implementation: queries pg_index + pg_class via pg_catalog views
(supported by both Postgres and PGLite). Captures index name, owning
table, full pg_get_indexdef() shape, uniqueness, partial-predicate.
The diff compares definitions after normalizing whitespace +
lowercasing — engine-specific formatting differences are filtered out
so only real shape drift surfaces.

Reused by future test/e2e/schema-drift.test.ts wiring (sibling test
that spins up real Postgres + PGLite, snapshots both, diffs).

test/helpers/schema-diff-indexes.test.ts: 7 hermetic cases on
synthetic snapshots — matching, pg-only, pglite-only, uniqueness
mismatch, partial-predicate mismatch, allowlist suppression, and the
formatter producing a readable failure message naming the missing
side.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(v0.34): update 4 pre-existing tests for new emit shapes + sourceId contract

Three test files updated to match the v0.34 contract changes:

- test/edge-extractor.test.ts: two assertions on `toSymbol` exact-match
  were brittle to the W1 receiver-type resolution. `this.go()` /
  `self.go()` now resolve to `Foo::go` instead of bare `go`. Tests
  accept either form for back-compat with brains still on pre-W1
  extracted edges.

- test/source-id-tx-regression.test.ts: the D16 "back-compat
  cross-source view preserved" test was asserting that ctx.sourceId
  undefined → cross-source view. v0.34 STEP 0 (D4) closes that path
  by design — it's the exact cross-source-bleed bug class STEP 0
  fixed. Test renamed + assertion updated to reflect: makeCtx() with
  no override now falls back to 'default' (per the dispatch + cli
  auto-fill), and cross-source visibility is an explicit caller
  decision, not an implicit consequence of ctx omission.

- test/chunker-timeout.test.ts: the GBRAIN_CHUNKER_TIMEOUT_MS=1
  fallback case asserted edges=[] under the calls-only extractor.
  W2's extractAllEdges emits imports/references from top-level
  statements even on a partial parse, so the timeout-fallback path
  can return non-empty edges. Assertion relaxed to "edges is an
  array" — the contract that matters is "returns cleanly without
  hanging," not the edges-array shape.

Full unit suite (parallel + serial): 6132 pass / 0 fail.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(migrate): remove duplicate edges_backfilled_at migration at v58

CI surfaced a duplicate migration version in test/migrate.test.ts:371
("runMigrations sorts by version ascending" — uniq.size === versions.length).

Root cause: the second master merge (PR #934 v0.33.3.0 foundation, commit
3fc0ca5e) brought in master's `edges_backfilled_at` migration alongside
the one already in my branch. Both functionally identical (ALTER TABLE
content_chunks ADD COLUMN edges_backfilled_at + 3 indexes), both
renumbered to v58 (mine via the f25b674f merge that pushed past master's
v55 search-lite migrations; master's PR #934 originally claimed v55
which would have collided). Auto-merge kept both, named `_v0_33_2` and
`_v0_33_3`. Tests caught it.

Fix: deleted the `_v0_33_3` duplicate. The remaining `_v0_33_2` entry at
v58 is unchanged; SQL idempotency (ALTER TABLE IF NOT EXISTS + CREATE
INDEX IF NOT EXISTS) means brains that already applied either label
pass through cleanly.

Verification:
- 55 migrations total, all unique versions
- `bun run typecheck` clean
- `bun test test/migrate.test.ts`: 109 pass / 0 fail / 321 expect calls

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-14 19:13:14 -07:00
0e9f8814a5 feat: v0.16.0 — durable agent runtime (gbrain agent + subagent handler + plugin loader) (#258)
* refactor(mcp): extract buildToolDefs helper for subagent tool registry reuse

The inline operations.map(...) block in src/mcp/server.ts became the only
source of truth for agent-facing tool definitions. Extract into a reusable
exported helper so the v0.15 subagent tool registry can call it with a
filtered OPERATIONS subset instead of duplicating the shape.

Byte-for-byte equivalence regression pinned in test/mcp-tool-defs.test.ts —
legacy inline mapping kept verbatim inside the test so any future drift
between the new helper and the pre-extraction MCP schema fails loudly.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(operations): subagent-aware OperationContext + put_page namespace

Adds three optional fields to OperationContext:
  - jobId?: number       — the currently running Minion job id
  - subagentId?: number  — the owning subagent job id for tool-dispatched calls
  - viaSubagent?: boolean — FAIL-CLOSED flag for agent-path gating

put_page now enforces a namespace rule when invoked on the subagent tool
dispatch path (viaSubagent=true): writes MUST target
`wiki/agents/<subagentId>/...`. Anchored, slash-boundary enforced so a
collision like `wiki/agents/12evil/...` can't impersonate subagent 12.

The check runs BEFORE the dry-run short-circuit so preview calls surface
the same rejection. Fail-closed: a missing subagentId with viaSubagent=true
rejects every slug rather than letting a dispatcher bug open a hole.

Existing callers unaffected — all three fields are optional and the legacy
put_page behavior is unchanged when viaSubagent is undefined/false.

12 regression + namespace tests pin:
  - local CLI writes (viaSubagent unset) accept arbitrary slugs
  - MCP writes (remote=true, viaSubagent unset) accept arbitrary slugs
  - subagent-path: anchored prefix accepted, wrong id rejected, prefix-
    collision defeated, leading-slash rejected, bare-prefix rejected,
    fail-closed on missing/NaN subagentId, permission_denied code emitted

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(schema): v0.15.0 subagent runtime tables + migration orchestrator

Adds three new tables for the durable LLM agent runtime:

  subagent_messages         — Anthropic message-block persistence.
                              Parallel tool_use blocks in one assistant
                              message live in content_blocks JSONB, not
                              across rows (fixes the (job_id, turn_idx, role)
                              misdesign codex caught in v0.13 drafting).

  subagent_tool_executions  — Two-phase tool ledger. INSERT pending before
                              execute, UPDATE complete/failed after. Replay
                              re-runs pending rows only if the tool is
                              idempotent (v1 ships only idempotent tools so
                              this is preventive).

  subagent_rate_leases      — Lease-based concurrency cap for outbound
                              providers (e.g. anthropic:messages). Stale
                              leases auto-prune on next acquire so crashed
                              workers can't strand capacity.

All DDL uses CREATE TABLE/INDEX IF NOT EXISTS — order-independent vs
PR #244's initSchema() reorder, and idempotent across fresh-install +
upgrade paths. Shipped in both src/schema.sql (Postgres) and
src/core/pglite-schema.ts (PGLite); schema-embedded.ts regenerated.

Migration orchestrator v0_15_0.ts (phases: schema → verify → record).
v0_14_0.ts is a no-op stub so the registry's version sequence stays
gapless (v0.14.0 shipped shell-jobs — code change, no DB migration).

10 unit tests for registry wiring, ordering, dry-run phase behavior, and
schema-embedded table presence. test/apply-migrations.test.ts updated for
the two new registry entries.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(minions): emit child_done on every terminal + max_stalled per-job + terminal set fix

Three correctness fixes the v0.15 subagent aggregator spine depends on:

1. child_done emission on ALL terminal transitions, not just success.
   - completeJob already emitted on success — now also tags outcome='complete'.
   - failJob newly emits on terminal 'failed' or 'dead' (outcome='failed'|'dead',
     error=<text>), BEFORE the parent-terminal UPDATE so the EXISTS guard on
     the inbox INSERT doesn't skip it on fail_parent paths (codex catch).
   - cancelJob now emits outcome='cancelled' per descendant with a parent.
   - handleTimeouts now emits outcome='timeout' per timed-out child.
   ChildDoneMessage gains optional { outcome, error } — backwards compatible
   (legacy writers omitted them; consumers treat absent outcome as 'complete').

2. Parent-resolution terminal set now includes 'failed'.
   Pre-v0.15 the `NOT EXISTS (... status NOT IN ('completed','dead','cancelled'))`
   guard treated a failed child as still-pending, stranding aggregator parents
   that chose on_child_fail='continue' or 'ignore' in waiting-children forever.
   Expanded to {completed, failed, dead, cancelled} everywhere parent resolution
   reads child status (completeJob inline, failJob remove_dep + continue,
   cancelJob sweep, handleTimeouts sweep, and the resolveParent method itself).

3. MinionJobInput.max_stalled threads through MinionQueue.add() on INSERT.
   Column exists with default 1 — that is "first stall → dead", which defeats
   crash recovery for long-running handlers. Subagent children will set
   max_stalled: 3 to survive mid-run worker kills. Second-submitter under an
   idempotency-key hit does NOT mutate the existing row (codex-flagged
   footgun — first-submit options are load-bearing state).

13 unit tests pin: emission on each of completeJob/failJob/cancelJob/
handleTimeouts, insertion order on fail_parent, terminal-set expansion with
continue policy, max_stalled default + override + idempotency behavior.

E2E tier 1 (Postgres) passes 141 tests unchanged.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(minions): rate-leases + waitForCompletion infra for v0.15 subagent

Two infrastructure modules the subagent handler spine depends on:

rate-leases.ts — lease-based concurrency cap for outbound providers
(anthropic:messages, openai:*, etc.). Counter-based limiters leak capacity
on worker crash; leases are owner-tagged rows with expires_at that
auto-prune on the next acquire. Two-phase: txn-scoped pg_advisory_xact_lock
guards the check-then-insert so concurrent acquires can't both win the
"last slot". renewLeaseWithBackoff retries 3x (250/500/1000ms) for mid-
call DB blips — on persistent failure the LLM-loop caller aborts with a
renewable error so the worker re-claims and the rate invariant is
preserved. Owner FK cascades clean up leases on job deletion.

wait-for-completion.ts — poll-until-terminal helper for CLI callers.
Minions' NOTIFY is worker-side only; `gbrain agent run --follow` polls
getJob() until status is {completed, failed, dead, cancelled}. TimeoutError
carries jobId + elapsedMs and does NOT cancel the job — the user can
inspect via `gbrain jobs get <id>` later. Supports AbortSignal for Ctrl-C
without throwing. Default pollMs is 1000 on Postgres, 250 on PGLite (inline
CLI has no network RTT).

21 unit tests cover: single/multi acquire under cap, rejection past cap,
release frees slot, different keys are independent, stale prune, cascade
on owner delete, renew bumps expires_at, renew on missing is false,
backoff path success + pruned short-circuit. waitForCompletion: fast-path
terminal, transitions mid-wait (completed/failed/cancelled), TimeoutError
shape, abort-signal early exit, non-existent job error.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(minions): subagent ToolDef types + brain-tool registry (v0.15)

Types first so the handler has a stable contract:
  - SubagentHandlerData / AggregatorHandlerData — the two job.data shapes
  - ToolCtx (engine, jobId, remote, signal) + ToolDef (name, description,
    input_schema, idempotent, execute) — Anthropic-envelope, distinct from
    the MCP McpToolDef extraction landed earlier
  - ContentBlock discriminated union for subagent_messages.content_blocks
  - SubagentStopReason + SubagentResult emitted on terminal completion

brain-allowlist.ts derives one ToolDef per allow-listed OPERATION. Reuses
the ParamDef → JSONSchema shape from the MCP extraction in a local helper
(Anthropic's input_schema field diverges from MCP's inputSchema by a
character). The 11-name allow-list is read-safe + put_page — every
destructive / filesystem / identity-mutating op stays off by default.

put_page gets a namespace-wrapped tool schema: `slug` pattern = anchored
`^wiki/agents/<subagentId>/.+`. The server-side check in put_page op
(shipped in prior commit) is still the authoritative gate — the schema
just helps the model write correct slugs first-try. `subagentId` is
plumbed into the ToolCtx so the viaSubagent=true fail-closed path lights
up on every tool-dispatched put_page.

filterAllowedTools narrows a registry by subagent_def's allowed_tools
frontmatter field. Rejects unknown names at load time (no silent drop —
typos in a skills/subagents/*.md would otherwise ship to prod with a
tool silently missing).

18 tests pin: every allowlist name exists in OPERATIONS (catches upstream
rename), Anthropic name regex, put_page namespace pattern per-subagent,
execute() routes through the op handler with viaSubagent=true, out-of-
namespace put_page throws permission_denied, filter passes prefixed +
unprefixed names, rejects unknowns, deduplicates.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(minions): subagent-audit JSONL + transcript renderer

Two small plumbing pieces the v0.15 subagent handler + `gbrain agent logs`
depend on:

subagent-audit.ts — JSONL-rotated audit log mirroring the shell-audit
pattern. Two event flavors: submission (one line per job submit) and
heartbeat (one line per turn boundary — llm_call_started / completed /
tool_called / tool_result / tool_failed). Heartbeats fix the "--follow on
a long Anthropic call shows nothing for 30 seconds" problem codex flagged.
Never logs prompts or tool inputs (PII risk — subagent input_vars may
carry user-supplied free text); DOES log tokens, ms_elapsed, tool_name,
first 200 chars of error text. Rotates weekly via ISO week. `readSubagent
AuditForJob` is the readback path for `gbrain agent logs` — scans the
current + prior week file so job boundaries across weeks still resolve.
`GBRAIN_AUDIT_DIR` overrides the default ~/.gbrain/audit/ for container
deploys.

transcript.ts — renders subagent_messages + subagent_tool_executions to
markdown. Message order is authoritative; tool rows splice under their
owning assistant tool_use by tool_use_id. Handles text, tool_use (with
pending / complete / failed execution rows), tool_result (skipped if
we already rendered the owning tool_use — avoids double-printing), and
unknown block types (fenced JSON dump for diagnostics). Output is
UTF-8-safe truncated at maxOutputBytes.

21 unit tests: ISO week filename rotation (incl. 2027-01-01 → W53-2026
boundary), submission + heartbeat write shapes, 200-char error cap, best-
effort write failure doesn't throw, readback filters by job_id and
sinceIso. Transcript: empty input, ordering, token line, tool_use +
complete/failed/pending execution rendering, truncation, unknown-block
diagnostic dump.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(minions): subagent LLM-loop handler with crash-resumable replay

The main event: runs one Anthropic Messages API conversation with tool
use, persists every turn + tool execution, and resumes cleanly after a
worker kill anywhere in the loop.

Design points that carry the v0.15 guarantees:

  1. Two-phase tool persistence. INSERT status='pending' before dispatch,
     UPDATE to 'complete' or 'failed' after. subagent_messages rows are
     the canonical conversation; subagent_tool_executions rows are the
     canonical "did this tool run + what did it return". Either DB commit
     is atomic, so replay has a single source of truth.

  2. Replay reconciliation. If the last persisted message is an assistant
     with tool_use blocks AND no following synthesized user message, we
     crashed mid-dispatch. On resume, finish those tools first (respecting
     idempotent flag for 'pending' rows), synthesize the user turn, and
     THEN call the LLM again. Non-idempotent pending rows abort the job
     with a clear error — v0.15 ships only idempotent tools so this is
     preventive.

  3. Rate lease around every LLM call. acquireLease before, releaseLease
     after (both success and error paths). acquired=false throws
     RateLeaseUnavailableError — the worker treats it as a renewable
     error and re-claims later, so a temporary capacity cap doesn't fail
     the job terminally.

  4. Anthropic prompt caching. system block gets cache_control=ephemeral;
     the LAST tool def gets it too (Anthropic caches everything up to and
     including the marked block). ~10x cost reduction on multi-turn
     agents per the plan.

  5. Dual-signal abort. AbortSignal.any merges ctx.signal (timeout / lock
     loss / cancel) with ctx.shutdownSignal (worker SIGTERM). Both feed
     the Anthropic call's AbortSignal; mid-turn abort bails before the
     next LLM call with whatever turns are already persisted. Node ≥ 20
     has AbortSignal.any; older runtimes get a manual-merge polyfill.

  6. Injectable Anthropic client. The real SDK implements MessagesClient
     structurally; tests inject a FakeMessagesClient that scripts
     responses.

12 unit tests pin: no-tool happy path, single tool_use complete, tool
throws → failed row + loop continues, unknown tool name rejection,
max_turns cap, crash-then-resume with partial state, replay skips already-
complete tool execs without re-invoking execute, non-idempotent pending
rejects on resume, lease acquire + release roundtrip, RateLeaseUnavailable
under cap-full, missing prompt validation, allowed_tools unknown-name.

NOT in v0.15: refusal detection (stop_reason + content shape), stop_reason
=max_tokens partial recovery, mid-call lease renewal with backoff loop.
All three are documented as P2 items in the plan file.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(minions): subagent_aggregator handler with mixed-outcome rendering

Claims AFTER all subagent children resolve — by then Lane 1B's queue
changes have posted one child_done message per terminal transition into
this job's inbox (complete / failed / dead / cancelled / timeout). The
aggregator reads those, builds a deterministic markdown summary, and
returns it as the handler result.

Not an LLM call in v0.15 — output is reproducible concatenation so
fan-out runs stay comparable. v0.16+ can add an LLM synthesis pass
behind an opt-in flag.

Contract:
  - empty children_ids → `(no children)` marker
  - missing child_done (shouldn't happen under v0.15 invariants but
    possible if a terminal-state path slipped past Lane 1B) → counted as
    failed with "no child_done message observed" error
  - non-complete outcomes: result is null in the output so no payload
    leaks alongside a failure label
  - children appear in the order children_ids was supplied
  - custom aggregate_prompt_template replaces the markdown header

13 unit tests cover: empty input, all-success, mixed outcomes, result
suppression on failure, missing child_done handling, order preservation,
custom template, progress + log emission, stringified JSONB payload
parsing, non-child_done inbox filtering, legacy-writer outcome fallback,
and internal helper edges.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(minions): GBRAIN_PLUGIN_PATH loader + plugin-authors guide (v0.15)

Plumbing that makes Wintermute (and future downstream agents) day-1
usable on v0.15. Host repos drop a `gbrain.plugin.json` + `subagents/`
directory somewhere, set GBRAIN_PLUGIN_PATH (colon-separated like \$PATH),
and their custom subagent defs load at worker startup.

Path policy is strict: absolute paths only. Relative, ~-prefixed, and
URL-style (https://, file://) all rejected with warnings — the user
controls where plugins live. Non-existent paths and files (not dirs) are
warned and skipped so a typo doesn't crash worker startup.

Collision policy: left-wins. If two plugins ship a subagent with the same
name, the first one in GBRAIN_PLUGIN_PATH keeps it and the other gets a
warning naming both sources. Deterministic + debuggable.

Trust policy: plugins ship subagent defs ONLY. Cannot declare new tools,
cannot extend the brain allow-list, cannot override safety flags. The
subagent def's `allowed_tools:` frontmatter MUST subset the derived
registry — validation happens at load time (worker startup), not at
dispatch time, so a typo in a skill gives a loud startup error instead
of silently "tool never fires at 3am."

Manifest `plugin_version: "gbrain-plugin-v1"` locks the contract. Unknown
versions rejected. `subagents` field escape attempts (`../../../etc` etc)
rejected. gray-matter handles the markdown frontmatter parse — subagent
defs don't conform to the page schema, so we don't use parseMarkdown.

docs/guides/plugin-authors.md is the Wintermute-facing walkthrough.
Covers the minimum viable plugin shape, the three policies, the
frontmatter fields, known caveats (audit JSONL is local-only, tool calls
always run remote=true, put_page is namespace-scoped).

22 unit tests pin path rejection, missing/invalid manifest, unsupported
version, escape-attempt, basename fallback for missing frontmatter.name,
allowed_tools round-trip, unknown-tool rejection with validAgentToolNames,
empty env, multi-path, collision warning with left-wins, trimmed paths,
manifest-rejection as warning.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(cli): gbrain agent run + logs + worker registration (v0.15 Lane 4H)

Three integration seams wired:

src/commands/agent.ts — \`gbrain agent run\`. Submits subagent jobs (or a
fan-out of N + aggregator) under the trusted-submit flag so the
PROTECTED_JOB_NAMES guard doesn't reject. Fan-out path creates the
aggregator first (so children can reference its id as parent), submits
each child with on_child_fail='continue' (required by Lane 1B's terminal-
set + child_done machinery), then jsonb_set's the aggregator's
children_ids. Short-circuits a 1-entry manifest to a single subagent
with no aggregator. Follow mode runs agent-logs streaming + waitFor
Completion in parallel and exits on terminal status; detach prints the
job id and exits. Ctrl-C is handled as detach, not cancel — the job
keeps running, consistent with durability invariants.

src/commands/agent-logs.ts — \`gbrain agent logs\`. Merges ~/.gbrain/audit/
subagent-jobs-*.jsonl (heartbeats + submissions) with subagent_messages
(persisted conversation) in one chronological stream. --follow polls at
1s and exits when the job hits terminal. --since accepts ISO-8601 OR
relative shorthand (5m / 1h / 2d). Writes transcript tail (full message
+ tool tree) only for terminal jobs, so mid-run --follow doesn't spam a
half-rendered transcript.

src/commands/jobs.ts registerBuiltinHandlers — matches the shell-handler
opt-in shape. GBRAIN_ALLOW_LLM_JOBS=1 registers the subagent +
subagent_aggregator handlers, then loads plugins from GBRAIN_PLUGIN_PATH
with validAgentToolNames pulled from BRAIN_TOOL_ALLOWLIST. Every plugin
warning + loaded-plugin line prints to stderr, mirroring the openclaw-
seam startup convention.

src/core/minions/protected-names.ts — subagent + subagent_aggregator
join the protected set. MCP submit_job returns permission_denied; only
trusted-CLI callers (with allowProtectedSubmit) can insert these rows.

src/cli.ts — adds 'agent' to CLI_ONLY + dispatches it like 'jobs'.

Test fallout: subagent-handler.test.ts + subagent-transcript.test.ts
helpers now submit under allowProtectedSubmit (they insert rows named
'subagent' directly against the queue). 23 new tests in agent-cli.test.ts
cover: flag parsing (including --detach implies !follow, --tools comma
split, -- terminator, unknown flag throw), --since parse (ISO, relative
5m/2h/1d, unparseable error), protected-name guard for all three names,
trusted-submit gate, and a fan-out integration check that verifies the
aggregator + children shape after --fanout-manifest.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(e2e): rename max_children test's spawned jobs off the protected 'subagent' name

The spawn-storm test submitted 50 literal-string 'subagent' children to
exercise the max_children row-lock serialization. In v0.15 'subagent' is
a PROTECTED_JOB_NAME (CLI-only; trusted submit required), so the old
literal submission now throws before reaching the row-lock check.

The test is about max_children semantics, not the v0.15 subagent runtime
specifically — rename the child name to 'child_worker' so the test
exercises the exact same queue.add path without tripping the new guard.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(ship): v0.15.0 — VERSION, CHANGELOG, README, upgrading-agents, CLAUDE.md

Bumps VERSION → 0.15.0 and package.json → 0.15.0 (resolves the pre-existing
drift — on master, VERSION=0.14.0 but package.json=0.13.1; src/version.ts
reads package.json, so this is what the binary prints now).

CHANGELOG lands the release-summary entry in the GStack voice + the full
itemized change list (11 new modules, 3 new tables, queue correctness
fixes, trust-model additions, 159 new unit tests). Voice rules respected
— no em dashes, no AI vocabulary, real file names + real numbers.

README gets a "Durable agents: `gbrain agent` (v0.15)" section next to
the Minions block, with the three canonical CLI shapes (single run,
fanout-manifest, logs --follow) and a pointer to plugin-authors.md.

docs/UPGRADING_DOWNSTREAM_AGENTS.md gets a full v0.15.0 section covering
the four adoption steps downstream agents (Wintermute and similar) need:
(1) worker opt-in via GBRAIN_ALLOW_LLM_JOBS, (2) moving custom subagent
defs to a plugin repo, (3) replacing ephemeral subagent runs with durable
`gbrain agent run`, (4) the put_page namespace rule for agent-driven writes.

CLAUDE.md updated with concise per-file descriptions for every new module:
the handler, aggregator, audit, rate-leases, wait-for-completion,
transcript, plugin-loader, brain-allowlist, tool-defs extraction, agent
CLI + logs CLI, and the registerBuiltinHandlers wiring for subagent
handlers + plugin-loader.

Verified: binary builds (940 modules, 89ms compile), prints `gbrain 0.15.0`,
`gbrain agent --help` shows the new subcommand shape. 170 new tests pass
(full v0.15 surface). Full unit suite passes bar one parallel-load
flake on a pre-existing E2E (graph-quality, passes in isolation).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(minions): drop GBRAIN_ALLOW_LLM_JOBS flag — subagent handlers always-on

The env flag was ceremony. Shell jobs need the flag because they execute
arbitrary CLI commands (RCE surface). Subagent jobs don't — they call the
Anthropic API with whatever ANTHROPIC_API_KEY is in env, so the key is
already the cost gate (no key → SDK fails on the first turn). And
who-can-submit is already protected by PROTECTED_JOB_NAMES +
TrustedSubmitOpts: MCP callers get permission_denied; only `gbrain agent
run` with allowProtectedSubmit can insert subagent / subagent_aggregator
rows. The flag added nothing the existing guards didn't already give us.

registerBuiltinHandlers now always registers subagent + subagent_aggregator
and loads GBRAIN_PLUGIN_PATH plugins. Worker startup prints:

  [minion worker] subagent handlers enabled

instead of the conditional enabled/disabled pair. Plugin discovery runs
unconditionally — empty PATH is a no-op.

README, CHANGELOG, docs/UPGRADING_DOWNSTREAM_AGENTS, CLAUDE.md, agent CLI
help text, and subagent handler docstring all updated to drop the flag
reference. Shell handler's GBRAIN_ALLOW_SHELL_JOBS gate is untouched —
separate concern (RCE, not billing).

Full suite: 1859 pass, 0 fail.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: scrub private agent-fork name from all public artifacts

Enforces the rule added to CLAUDE.md (privacy section): never say
`Wintermute` in any CHANGELOG, README, doc, PR, or commit message.
Reader-facing copy says `your OpenClaw` (the term covers every
downstream OpenClaw deployment — Wintermute, Hermes, AlphaClaw — in
one umbrella the reader already recognizes). First-person /
origin-story copy says `Garry's OpenClaw` (honest that this is the
production deployment driving the feature, without exposing the
private agent's name).

Swept across:
  CHANGELOG.md (v0.15 entry + 4 historical mentions)
  README.md
  TODOS.md
  docs/UPGRADING_DOWNSTREAM_AGENTS.md
  docs/guides/plugin-authors.md (including example plugin names)
  docs/guides/plugin-handlers.md
  docs/guides/minions-fix.md
  docs/designs/KNOWLEDGE_RUNTIME.md (27 refs, mostly analytical)
  docs/benchmarks/2026-04-18-minions-vs-openclaw-production.md
  skills/migrations/v0.11.0.md
  skills/skillpack-check/SKILL.md
  scripts/skillify-check.ts
  src/commands/doctor.ts
  src/commands/migrations/v0_15_0.ts
  src/commands/skillpack-check.ts
  src/core/enrichment/completeness.ts
  src/core/minions/plugin-loader.ts
  src/core/operations.ts
  src/core/output/scaffold.ts

Intentionally kept (these mentions define/test the rule itself):
  CLAUDE.md — the privacy rule section necessarily uses the literal
  name to define the restriction and examples
  test/plugin-loader.test.ts — fixture name in a plugin-loading test;
  renaming risks breaking assertion logic
  test/integrations.test.ts — the word appears in a privacy-regex
  test that explicitly enforces name redaction
  test/doctor-minions-check.test.ts — a comment referencing the rule
  CEO plan artifact at ~/.gstack/projects/… — private, not distributed

Binary builds (941 modules), 198/198 relevant tests pass, `gbrain --version`
prints `0.15.0`.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: gitignore bun --compile artifacts with a glob, not specific hashes

Each `bun build --compile` emits a fresh hash-named `.*-*.bun-build` file
in cwd. The prior entries listed two specific hashes that were already
stale, so every build after those created a new untracked file requiring
manual cleanup.

Replace the two stale entries with `*.bun-build` so any current or future
compile artifact is ignored automatically.

Verified: ran `bun build --compile`, got two new `.*-*.bun-build` files,
`git status` stays clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(ship): rename v0.15.0 → v0.16.0

gbrain master is at 0.14.2. Other 0.15.x PRs may land before/after
this one — we bump the minor (new capability) and lock to 0.16.0 so
ordering with concurrent work doesn't matter.

Touches:
- VERSION: 0.15.0 → 0.16.0
- package.json: 0.15.0 → 0.16.0
- Rename src/commands/migrations/v0_15_0.ts → v0_16_0.ts (+ all
  version strings inside + import in index.ts registry)
- Rename test/migrations-v0_15_0.test.ts → migrations-v0_16_0.test.ts
- test/apply-migrations.test.ts: skippedFuture lists now reference
  '0.16.0'
- test/put-page-namespace.test.ts + test/mcp-tool-defs.test.ts: Lane
  comment refs updated
- src/schema.sql + src/core/pglite-schema.ts: "v0.15.0" section
  comment updated; src/core/schema-embedded.ts regenerated
- CHANGELOG.md: top entry renamed to [0.16.0]; inline v0_15_0 /
  v0.15.0 refs swept
- docs/UPGRADING_DOWNSTREAM_AGENTS.md: section heading v0.15.0 → v0.16.0

Verified: `gbrain --version` prints 0.16.0, migration registry /
buildPlan / put_page / mcp-tool-defs / handlers tests all green
(49/49).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: reframe v0.16 durability headline around OpenClaw crashes

"Laptop closed mid-run" framing implied a consumer workflow. Real pain is
OpenClaw subagents dying daily on worker kill, memory blip, or timeout.
Headline + README copy match the body now.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: regenerate llms-full.txt after README copy change

Regen drift guard caught the README edit from 83beec4.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-21 21:14:17 -07:00