Commit Graph
5 Commits
Author SHA1 Message Date
488e4824e8 v0.34.1.0 fix(mcp): MCP fix wave — source-isolation P0 + PKCE DCR + federated_read + 3 more (#996)
* fix(mcp): skip stdin EOF handlers when MCP_STDIO=1

OpenClaw's bundle-mcp gateway and similar wrappers pipe the JSON-RPC
handshake on stdin then close their stdin half. Pre-fix, both stdin
'end' and 'close' listeners (server.ts:65-66 and serve.ts:204-206)
treated this as a permanent disconnect and shut the server down before
the first tool call arrived.

Guard both sites with `process.env.MCP_STDIO !== '1'`. Signal handlers
(SIGTERM/SIGINT/SIGHUP), transport.onclose, and the parent-process
watchdog still cover legitimate shutdown paths. The serve.ts site
threads the env read through an injectable `mcpStdio?: boolean` on
ServeOptions so tests stay isolated (no process.env mutation per
scripts/check-test-isolation.sh R1).

Tests: 3 new cases in test/serve-stdio-lifecycle.test.ts pin the
guard's invariants — mcpStdio=true must NOT trigger shutdown on stdin
EOF, signals must still drive shutdown with mcpStdio=true, and
mcpStdio=false (default) preserves existing CLI behavior. 25/25 pass.

Origin: PR #870.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(oauth): honor token_endpoint_auth_method=none for PKCE public clients

RFC 7591 §3.2.1: when a DCR client declares
token_endpoint_auth_method="none" (PKCE-only public clients like Claude
Code, Cursor), the authorization server MUST NOT issue a client_secret.
Pre-fix, registerClient unconditionally minted a secret, and the MCP
SDK's clientAuth middleware then rejected valid public-client flows on
/token because it expected client.client_secret to match.

Three changes to src/core/oauth-provider.ts:registerClient:

  - Gate clientSecret generation on isPublicClient = (auth_method === 'none').
    Public clients store client_secret_hash = NULL.
  - Omit client_secret from the response payload for public clients.
    Confidential clients (default client_secret_post and explicit
    client_secret_basic) keep their existing one-time-reveal shape.
  - Normalize NULL secret_hash to JS undefined in getClient so SDK
    middleware (which checks client.client_secret === undefined, not
    === null) correctly identifies public clients and skips the
    secret-comparison branch on /token.

Schema is already permissive (client_secret_hash TEXT, no NOT NULL on
both src/schema.sql and src/core/pglite-schema.ts) — no migration
needed.

Tests: 5 new cases in test/oauth.test.ts pin:
  - public client → no client_secret in response (#11 from plan)
  - default auth_method → secret unchanged (regression guard)
  - explicit client_secret_post → secret unchanged
  - getClient NULL→undefined normalization
  - PKCE full /authorize → /token end-to-end with no secret (#15 from plan)

69/69 oauth.test.ts cases pass. typecheck clean.

Origin: PR #909.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(serve-http): --bind HOST, default to loopback (127.0.0.1)

Adds `gbrain serve --http --bind <interface>` to control which network
interface the HTTP MCP server listens on. Default flipped from
`0.0.0.0` (pre-v0.34) to `127.0.0.1` (v0.34.0+).

Why the flip: gbrain's primary use case is a personal-knowledge brain on
a laptop. The previous default exposed brains on every interface — one
accidental `--http` invocation away from publishing the brain to a LAN.
Server operators who need remote access pass `--bind 0.0.0.0` (or a
specific interface). Codex's outside-voice on the original PR #864
correctly flagged that the additive flag wasn't actually the fix; the
default needed to change for the safety claim to hold.

If `--public-url` is set but `--bind` is unset, runServeHttp prints a
loud stderr WARN at startup recommending `--bind 0.0.0.0`. Declaring a
public URL while quietly binding loopback is almost always a
misconfiguration; we want the operator to see it on first start, not
silently fail remote requests.

Startup banner now includes a `Bind:` row so the listening interface is
visible alongside Port / Engine / Issuer.

Origin: PR #864, extended with D11 (default flip) per /plan-eng-review
codex outside-voice review.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(mcp): seal source-isolation leak on read path (P0)

Pre-fix, an authenticated OAuth MCP client scoped to source-A could
enumerate source-B pages via six read-side ops: search, query (text
AND image paths), list_pages, traverse_graph, and find_experts. The
v0.31.8 source-scoping pattern shipped through dispatch.ts but the op
handlers never threaded ctx.sourceId into their engine calls, and
hybridSearch.ts:223's explicit SearchOpts rebuild dropped sourceId
even when callers passed it.

Sealing the leak:

  - src/core/operations.ts adds sourceScopeOpts(ctx), the canonical
    precedence ladder: ctx.auth.allowedSources (federated) wins over
    ctx.sourceId (scalar) wins over nothing. Threaded into all 5
    read-side op handlers + the query-image-path searchVector call
    (the 6th leak surface codex caught in plan review).

  - src/core/search/hybrid.ts:223 now threads sourceId + sourceIds
    fields through the inner SearchOpts rebuild. The explicit pick
    shape is preserved (HNSW inner-CTE ordering depends on it) but
    extended.

  - src/core/types.ts adds sourceIds?: string[] to SearchOpts +
    PageFilters (D9: federated read needs array-shaped engine filter
    or fan-out; array wins for hot retrieval).

  - src/core/operations.ts AuthInfo gains sourceId + allowedSources
    (D2: identity surface symmetric with the federated_read column
    #876 will add).

  - Both engines now apply WHERE source_id = $N (scalar) or = ANY($N::text[])
    (array) at the SQL layer for searchKeyword, searchKeywordChunks,
    searchVector, listPages, traverseGraph, traversePaths. Array form
    wins when both are set. The searchVector filter pushes into the
    inner HNSW CTE (codex flagged this placement during plan review).

  - traverseGraph + traversePaths signatures gain opts.sourceId +
    opts.sourceIds; engine.ts interface updated.

  - findExperts (the whoknows op, D3 5th leak surface) accepts
    sourceId + sourceIds and threads them into its internal
    hybridSearch call. PR #861 was authored before v0.33 shipped so
    this op wasn't covered in the original PR.

Auth wiring:

  - GBrainOAuthProvider.verifyAccessToken populates AuthInfo.sourceId
    from oauth_clients.source_id. JOIN guarded by isUndefinedColumnError
    so pre-v55 brains degrade to legacy projection rather than refusing
    every token verification.

  - GBrainOAuthProvider.registerClientManual gains a sourceId
    parameter (defaults to 'default'). DCR registerClient also sets
    source_id='default' on the inserted row.

  - serve-http.ts:929 cleanup: AuthInfo.sourceId is now a real typed
    field. The cast + GBRAIN_SOURCE env fallback chain is gone (D13).
    Legacy bearer tokens default to 'default' source in
    verifyAccessToken.

  - http-transport.ts (legacy access_tokens path) threads
    sourceId='default' through DispatchOpts so v0.22.7 callers stay
    source-scoped.

  - auth.ts CLI adds --source flag to gbrain auth register-client.

Migration v55 (D10 + D13):

  - ALTER TABLE oauth_clients ADD COLUMN source_id TEXT (nullable).
  - Backfill UPDATE source_id = 'default' WHERE source_id IS NULL —
    preserves v0.33 effective behavior verbatim for legacy clients.
  - ADD CONSTRAINT FK ... REFERENCES sources(id) ON DELETE SET NULL,
    wrapped in DO block so re-runs against fresh-install brains (where
    the FK already lives inline in SCHEMA_SQL) no-op cleanly.
  - CREATE INDEX idx_oauth_clients_source_id WHERE source_id IS NOT NULL
    for the verifyAccessToken JOIN.
  - GBRAIN_ACCEPT_SILENT_WIDEN env-flag wired through the runner via
    SET LOCAL gbrain.accept_silent_widen — reserved for future migrations
    that hit the silent-widen footgun codex flagged. This migration
    doesn't need it (column is brand new; no pre-existing stale values
    possible by definition).
  - src/core/pglite-schema.ts + src/schema.sql include the column +
    FK + index inline for fresh installs.

Tests: new test/e2e/source-isolation-pglite.test.ts with 13 regression
cases — one per leak surface (search/list_pages/traverse/etc.) plus
explicit AuthInfo.sourceId and AuthInfo.allowedSources op-handler
threading checks. Full unit suite: 6034 pass / 0 fail. PGLite
initSchema time dropped from 2.4s to 850ms after consolidating v55's
DO blocks (multiple DO blocks were slow on PGLite; one DO block for
the FK install only is fine).

Origin: PR #861 + plan-eng-review decisions D2/D3/D4/D9/D10/D13 + F2.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(gateway): multimodal embedding for openai-compatible providers

Pre-fix, embedMultimodal hardcoded a recipe.id === 'voyage' branch and
threw AIConfigError for every other recipe. Multimodal-capable providers
fronted by LiteLLM (or any openai-compatible proxy) were unreachable
even when the operator had wired up the model.

The fix:

  - src/core/ai/gateway.ts adds embedMultimodalOpenAICompat() that
    POSTs to the standard /embeddings endpoint with content arrays
    carrying image_url entries. Routing comes from the existing
    recipe.implementation switch — Voyage stays on its own
    /multimodalembeddings path; every other openai-compatible recipe
    flows through the new helper.

  - src/core/ai/recipes/litellm-proxy.ts declares
    supports_multimodal: true so embedMultimodal accepts the recipe.
    No multimodal_models allow-list: LiteLLM is a passthrough proxy
    and the user owns model-id selection; provider rejection (400 from
    upstream) is the right enforcement layer there. Voyage's static
    allow-list shape stays unchanged (its 12 models share
    supports_multimodal but only one is multimodal-capable).

  - D12 runtime dimension validation: the new helper checks the
    returned vector length against the recipe's declared default_dims
    (preferred) or the brain's embedding_dimensions config. Mismatch
    throws AIConfigError with model id + observed + expected so the
    operator can swap models or rebuild the column. Pre-fix, a
    wrong-dim response would surface as a cryptic pgvector
    "vector dimension mismatch" at INSERT time.

  - Auth resolution routes through the existing defaultResolveAuth
    helper so optional-auth recipes (LiteLLM proxy with no
    LITELLM_API_KEY) and required-auth recipes both share one code
    path. Optional-auth sends "Authorization: Bearer unauthenticated"
    which servers like Ollama / llama-server ignore but the SDK
    contract requires.

Tests: 11 new cases in test/openai-compat-multimodal.test.ts cover
happy-path, multi-input batching, unauthenticated proxy, D12 dim
mismatch + default-dim fallback, 401 / 400 / malformed-JSON / non-array
error paths, and an explicit Voyage-regression test pinning that the
new openai-compat route doesn't accidentally hijack the Voyage path.
All 41 multimodal-related tests pass (existing voyage suite + new).
typecheck clean.

Origin: PR #875 + plan-eng-review D12 (runtime dim validation).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(oauth): federated_read read scope (#876)

Pre-fix, OAuth clients had a single source-scope axis (source_id, added
in v55). A client could either write+read one source OR be a super-reader
across all sources (via NULL source_id). There was no middle ground —
WeCare-style L3 dept clients that need to write to dept-x but read
dept-x + parent canon + shared canon had no expression.

#876 adds federated_read TEXT[] as an orthogonal read-scope axis. source_id
is the WRITE authority; federated_read is the READ authority. They default
to matching values (read scope == write scope, the pre-v0.34 default)
when a client is registered without an explicit federated read list.

Migrations v56-v60 (six new migrations on top of v55):

  - v56: ALTER TABLE ... ADD COLUMN federated_read TEXT[] NOT NULL DEFAULT '{}'.
  - v57 (F5): explicit CASE backfill so source_id IS NULL → '{}' (not an
    array containing NULL — codex caught this ambiguity during plan review).
  - v58: post-backfill validation. Fails loud if any row's source_id isn't
    in its federated_read array, pointing at a logic bug in v57 if fired.
  - v59: flip the source_id FK from ON DELETE SET NULL to ON DELETE
    RESTRICT now that federated_read provides the alternative scope-loss
    path. Pre-flip, deleting a source could silently widen any oauth_client
    to super-reader; post-flip, source delete is refused if any client
    references it (operator must revoke/re-scope first).
  - v60: GIN index on federated_read for array-containment queries.

Auth wiring:

  - GBrainOAuthProvider.verifyAccessToken JOINs c.federated_read and
    populates AuthInfo.allowedSources. Pre-v56 / pre-v55 brains degrade
    via the existing isUndefinedColumnError fallback chain.
  - registerClientManual gains a federatedRead?: string[] parameter
    (defaults to [sourceId]).
  - DCR registerClient sets source_id='default' + federated_read=['default']
    on the inserted row.
  - auth.ts CLI adds --federated-read SRC1,SRC2,... flag. The
    register-client output now prints "Federated reads:" so operators
    confirm the scope they set.

Engines consume the federated array through the SearchOpts.sourceIds /
PageFilters.sourceIds field that #861 added (no engine changes here — the
plumbing was D9). sourceScopeOpts in operations.ts already prefers the
auth.allowedSources array over scalar ctx.sourceId when set.

Test seam:
  - test/book-mirror.test.ts now spawns the CLI with GBRAIN_HOME pointed
    at a tempdir so the test isn't sensitive to the developer's local
    ~/.gbrain/config.json. Pre-fix the test could silently inherit a real
    Postgres connection and hang past the default 5s test timeout. Fresh
    GBRAIN_HOME → "No brain configured" → exit 1 in <1s.
  - test/e2e/source-isolation-pglite.test.ts gains one more regression
    case: AuthInfo.allowedSources = [] (explicit empty) MUST NOT widen
    scope to "all sources" — the silent-widen footgun precedence ladder.
  - test/openai-compat-multimodal.test.ts is part of the wave's commits
    via the migrate.ts changes that bump the schema chain. typecheck-only
    fix on a captured-auth type was already in #875's tree.

6045 unit tests pass / 0 fail. typecheck clean. PGLite initSchema runs
v55-v60 in ~786ms total (within the test-harness budget for tests using
the canonical beforeAll engine pattern).

Origin: PR #876 + plan-eng-review F5 (CASE backfill).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.34.0.0: MCP fix wave (#870 #909 #864 #861 #875 #876)

VERSION + package.json + CHANGELOG bump for the six-PR MCP fix wave.
Schema chain extends from v54 → v60; oauth_clients gains source_id +
federated_read columns; auth'd MCP clients now stay inside their scope
across all read-side ops; PKCE-only DCR works; --bind defaults to
loopback; LiteLLM multimodal embedding ships.

Contributed by @Hansen1018 (#870), @ding-modding (#909), @DukeDawg
(#864), @toilalesondev (#861 + #876), @yoelgal (#875).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: update project documentation for v0.34.0.0

Sync README, CLAUDE.md, SECURITY.md, docs/architecture/topologies.md,
and docs/mcp/DEPLOY.md to reflect the v0.34.0.0 MCP fix wave:

- README: document --bind HOST default (loopback), --source +
  --federated-read register-client flags, PKCE public-client gate
- SECURITY.md: note loopback-by-default for serve --http, update the
  trust-proxy contract to point at the new default
- CLAUDE.md: annotate operations.ts (sourceScopeOpts helper),
  oauth-provider.ts (verifyAccessToken JOIN + PKCE public clients),
  serve-http.ts (--bind flag), gateway.ts (openai-compat multimodal +
  dim validation), mcp/server.ts (MCP_STDIO guard), auth.ts (--source
  + --federated-read), migrate.ts (v58-v63 chain), engine.ts
  (sourceIds field). Add 4 new test-file entries for
  source-isolation-pglite, openai-compat-multimodal,
  serve-stdio-lifecycle, oauth.test.ts PKCE cases
- docs/architecture/topologies.md: source-scoped register-client
  example, --bind 0.0.0.0 for thin-client host setup
- docs/mcp/DEPLOY.md: --bind explanation in the ngrok section,
  source-scoped client recipe
- llms-full.txt: regenerated per the CLAUDE.md-edit chaser rule

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: bump v0.34.0.0 → v0.34.1.0

Renumbering the MCP fix wave from v0.34.0.0 to v0.34.1.0 so the
release slot lands between master's v0.33.2.1 and the next minor.

Touches every release-artifact mention:
- VERSION: 0.34.0.0 → 0.34.1.0
- package.json: same
- CHANGELOG.md header + "To take advantage" block
- CLAUDE.md key-files annotations (8 entries that document this wave)
- llms-full.txt (regen from CLAUDE.md)
- README.md / SECURITY.md / docs/architecture/topologies.md / docs/mcp/DEPLOY.md
- Wave code-comment markers ("// v0.34.0 (#NNN):" → "// v0.34.1 (#NNN):")

Test files renamed alongside since they were committed with the wave.

Commit subjects on the original 6 PR commits + the v0.34.0.0 bump
commit (4f533c726b47db7e) intentionally NOT rewritten — those are
history. `git log` finds the implementation by message subject, not by
version tag.

6275 unit tests pass, typecheck clean, migration chain v58-v63 unchanged.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-14 20:15:29 -07:00
a73108b26f v0.32.2 feat: facts join system-of-record + 3-layer privacy + CI invariant gate (#885)
* schema: migration v51 facts_fence_columns + fresh-install parity

v0.32.2 commit 1/11.

Facts become FS-canonical via a `## Facts` fence on entity pages (mirror of
takes-fence). row_num + source_markdown_slug are the round-trip columns the
fence parser uses to reconcile markdown → DB.

Schema changes:
- ALTER TABLE facts ADD COLUMN IF NOT EXISTS row_num INTEGER
- ALTER TABLE facts ADD COLUMN IF NOT EXISTS source_markdown_slug TEXT
- CREATE UNIQUE INDEX idx_facts_fence_key (source_id, source_markdown_slug,
  row_num) WHERE row_num IS NOT NULL

Both columns nullable: pre-v0.32 rows don't have them until commit 6's
v0_32_2 orchestrator backfills via fence-append. The partial WHERE clause is
the Codex R2 collision guard — without it, two pre-v51 NULL-row_num rows on
the same (source_id, source_markdown_slug) coordinate would collide and fail
the migration on any populated v0.31 brain.

Fresh-install parity: the v40 CREATE TABLE block now declares the columns
from the start, so a brand-new install hits a single CREATE that already
has them and the v51 ALTERs no-op via IF NOT EXISTS. Existing brains pick
them up through the v51 migration.

Idempotent under all states (re-runs are no-ops). Metadata-only ALTERs on
PG 11+ and PGLite — no table rewrite. Partial-index syntax verified
against v40's existing idx_facts_unconsolidated precedent.

Tests:
- 6 new v51 cases in test/migrate.test.ts covering name, ADD COLUMN shape,
  nullable contract, partial-unique-index keys, the WHERE-NULL collision
  guard, and LATEST_VERSION progression.
- All 109 migration tests pass (was 103); schema walks 15 → 51 cleanly.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: facts-fence.ts + extract shared escape helpers from takes-fence

v0.32.2 commit 2/11.

New: src/core/facts-fence.ts — structural mirror of src/core/takes-fence.ts.
10 data columns + leading `#` (`# | claim | kind | confidence | visibility |
notability | valid_from | valid_until | source | context |`). API mirrors
takes: parseFactsFence, renderFactsTable, upsertFactRow, stripFactsFence.

Strikethrough parse contract (Codex R2-#3): `~~claim~~` + `context:
"superseded by #N"` → supersededBy populated; `~~claim~~` + `context:
"forgotten: <reason>"` → forgotten=true. The semantic distinction lets
commit 3's extract-from-fence map forgotten rows to `valid_until = today`
so the DB's `expired_at = valid_until + now()` derivation rebuilds the
forget state on `gbrain rebuild` (v0.32.3 follow-up).

Refactor: extracted shared primitives to src/core/fence-shared.ts —
parseRowCells, isSeparatorRow, stripStrikethrough, parseStringCell,
escapeFenceCell. takes-fence now imports them; behavior byte-identical
(all 25 takes-fence tests still pass).

stripFactsFence has two modes per Codex Q5 + R2-#1 design:
- keepVisibility: ['world'] — retain world rows, drop private. The mode
  both the chunker (Layer A) and get_page over remote MCP (Layer B) use.
  Private fact bytes never reach content_chunks.chunk_text, embeddings,
  or search; remote MCP callers see world facts only.
- default / empty array — drop the entire fence block. Defensive deny-
  by-default at the privacy boundary.

Tests: 36 new cases in test/facts-fence.test.ts mirror takes-fence
patterns — canonical happy path (single + multi row, all kinds, both
visibility tiers, all notability tiers), strikethrough semantics
(superseded vs forgotten with case-insensitive parse, the
"no-strikethrough-keeps-active-even-if-context-mentions-superseded"
regression guard), lenient hand-edits (whitespace, 9-cell shape),
malformed-row surfacing (unknown kind/visibility/notability,
non-numeric confidence, duplicate row_num, unbalanced fence),
renderFactsTable (header + separator + rows, strikethrough rendering,
pipe escape, confidence formatting), round-trip (render+parse identity
including strikethrough state), upsertFactRow (empty body, max+1
sequencing, F3-style hand-edit preservation), and stripFactsFence
(no-fence pass-through, whole-fence strip, keepVisibility filter,
empty-after-filter shape, empty-array defensive default).

76/76 tests across facts-fence + takes-fence + chunker-recursive pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: src/core/facts/extract-from-fence.ts — pure ParsedFact → NewFact mapper

v0.32.2 commit 3/11.

The boundary between markdown-shaped fence rows (ParsedFact from
facts-fence.ts) and DB-shaped engine rows (NewFact). Pure function, no
I/O. Resolves Codex Q7: engines stay markdown-unaware. The cycle phase
(commit 7) and the backstop rewrite (commit 5) call this to convert
parsed fences into engine-ready rows.

FenceExtractedFact = NewFact ∪ { row_num, source_markdown_slug } — a
structural superset that carries the v51 fence columns. Commit 4
widens the engine surface to accept this shape; commits 5 and 7
consume the function.

Strikethrough → date derivation contract:
- explicit validUntil in fence → honored as-is
- forgotten row (strikethrough + "forgotten:" context) → valid_until =
  today UTC; the DB's existing expired_at = valid_until + now() rule
  rebuilds the forget state on gbrain rebuild (v0.32.3 follow-up)
- supersededBy row without explicit validUntil → null; consolidator
  phase fills this in from the newer row's valid_from
- inactive-unrecognized (strikethrough + neither flag) → today; honors
  the user's strikethrough intent for unrecognized contexts

Determinism guard: nowOverride opt makes the today-stamping testable
without freezing global Date. Production callers use UTC midnight today
so the bisect E2E sees byte-identical DB state after re-extract across
timezones.

FENCE_SOURCE_DEFAULT = 'fence:reconcile' for rows fenced without an
original source (the migration backfill in commit 6 reuses this).

Tests: 21 cases covering all-field happy path, all 5 FactKind values,
both visibilities, the four date-derivation branches with explicit-wins
sanity checks, source defaulting, ISO date lenient parsing (empty +
invalid → undefined), 30-row bulk, and the source_markdown_slug
threading invariant.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: engine.insertFacts batch + deleteFactsForPage on both engines

v0.32.2 commit 4/11.

New BrainEngine surface for the reconciliation path:

  insertFacts(
    rows: Array<NewFact & { row_num: number; source_markdown_slug: string }>,
    ctx: { source_id: string },
  ): Promise<{ inserted: number; ids: number[] }>

  deleteFactsForPage(slug: string, source_id: string): Promise<{ deleted: number }>

insertFacts is the only entry point that persists v51 columns
(row_num, source_markdown_slug). Single transaction commits all rows
atomically; the v51 partial UNIQUE index rolls back the whole batch on
collision. Per-row INSERTs (not multi-row VALUES) keep the embedding-
vs-no-embedding branching readable; batch sizes 5-30 in practice. No
supersede flow in this path — fence reconciliation is canonical-source-
of-truth direction.

deleteFactsForPage scopes by (source_id, source_markdown_slug). Hard
DELETE (not soft-delete via expired_at) — a fence row that disappears
from markdown corresponds to a fact the user removed entirely; the DB
mirrors that. Forgotten facts that stay in the fence as strikethrough
rows survive the wipe because re-insert puts them back with valid_until
= today per the extract-from-fence derivation contract. Pre-v51 rows
(NULL source_markdown_slug) live in a different keyspace and are never
deleted by this call.

Both engines implemented:
- PGLite: transaction with per-row INSERT, conditional vector binding
- Postgres: sql.begin() transaction, postgres.js tagged template

Tests (13 new cases in test/insert-facts-batch.test.ts):
- empty batch returns inserted:0
- single-row + multi-row persistence, ids in input-order
- all NewFact + v51 columns round-trip
- v51 partial UNIQUE rolls back whole batch on collision
- different source_markdown_slug + different source_id values don't
  collide on same row_num
- deleteFactsForPage scoping (same source different page; same page
  different source; pre-v51 NULL-source_markdown_slug rows untouched)
- delete-then-reinsert round-trip (the cycle-phase pattern)

226 tests pass across facts surface + migrate + takes-fence (no
regressions in adjacent code).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: markdown-first fact write path in src/core/facts/backstop.ts

v0.32.2 commit 5/11.

THE rewrite. Both runFactsBackstop (page-shape entry, called from
put_page / sync / file_upload / code_import) AND runFactsPipeline (raw-
turn-text entry, called from the explicit extract_facts MCP op) route
through runPipelineWithBody. Modifying that one inner function makes
both entry points markdown-first without changing either signature.
Resolves Codex R2-#2 surface gap.

New: src/core/facts/fence-write.ts — writeFactsToFence orchestrator +
lookupSourceLocalPath helper.

Pipeline (post-dedup, per entity_slug group):
1. Acquire FS page-lock via src/core/page-lock.ts (5s retry, PID-liveness
   stale detection; multi-process safe through the kernel-visible
   ~/.gbrain/page-locks/<sha-of-slug>.lock file)
2. Read entity page from <source.local_path>/<slug>.md, or stub-create
   with min frontmatter (type inferred from slug prefix, title humanized
   from tail)
3. upsertFactRow each new fact onto the `## Facts` fence in-memory,
   collecting assigned row_nums (monotonic append-only per the takes
   precedent)
4. Atomic write: writeFileSync(.tmp) → re-readFileSync(.tmp) →
   parseFactsFence(.tmp) → on warnings: leave .tmp + JSONL surface +
   NO DB write; on clean: renameSync(.tmp → file). Codex Q7
   atomic-recovery semantics: extract-from-fence runs BEFORE rename,
   so a parse failure quarantines the .tmp without corrupting the
   canonical file
5. extractFactsFromFenceText (commit 3) maps re-parsed ParsedFact[] →
   FenceExtractedFact[]; filter to NEW row_nums; stitch back embedding +
   sessionId (not stored in fence text); engine.insertFacts batch
   (commit 4)

Three structural fallbacks to legacy DB-only insertFact:
- sources.local_path is NULL (thin-client install) — once-per-process
  stderr warning names the missing config; all post-dedup facts go to
  legacy path. Documented as named exception in the architecture doc
  (commit 11)
- f.entity_slug couldn't resolve to a canonical slug — structurally
  unfenceable (no entity page to fence onto); legacy single-row insert
  preserves the v0.31 semantic
- Fence parse-validation fails on a .tmp — that page's facts skip; do
  NOT fall through to legacy DB-only because the DB index for that
  page would be inconsistent with a broken fence

No re-entrancy guard needed: writeFactsToFence uses writeFileSync +
renameSync directly, NOT engine.putPage. No code path can re-trigger
runFactsBackstop on the markdown write. The architecture self-prevents
the recursion concern Codex Q7 raised. Documented in fence-write.ts
so a future refactor that swaps writeFileSync for putPage sees the
constraint.

Dedup unchanged: cosine similarity @ 0.95 against DB candidates, before
fence write. Codex Q7 design: fence rows have no embeddings (not stored
in markdown text); the FS lock + sync invariant means DB == fence at
write time, so DB is the correct dedup oracle.

Tests (11 new cases in test/fence-write.test.ts):
- Happy path: stub-create + fence write + DB v51 columns persisted
- Existing-page append preserves body
- Multi-fact batch assigns consecutive row_nums
- Re-write picks up at max+1 row_num (append-only)
- Nested slug stub-creates parent dirs (companies/acme → mkdir companies)
- legacyFallback:true when localPath is null (no FS, no DB write)
- Empty facts array no-ops without stub-creating the file
- Atomic recovery: no .tmp file left after success
- lookupSourceLocalPath: existing source, unknown source, NULL local_path

The multi-process FS lock contention test lives in
test/e2e/facts-lock-contention.test.ts (commit 10's invariant capstone,
since Bun.spawn is an E2E concern). These cover the in-process happy
and recovery paths.

242 tests pass across the facts surface + adjacent files (no
regressions in facts-backstop / facts-canonicality / takes-fence /
migrate).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: migration orchestrator v0_32_2.ts — backfill v0.31 facts to fences

v0.32.2 commit 6/11.

Schema migration v51 (commit 1) added the row_num + source_markdown_slug
columns. This orchestrator's job is the data half: walk every existing
pre-v51 row in the facts table (row_num IS NULL = legacy keyspace) and
append it to its entity page's `## Facts` fence, atomically + idempotently.

Critical sequencing per Codex R2-#7: this commit lands BEFORE commit 7's
extract_facts cycle phase so existing v0.31 facts get fenced before any
destructive reconciliation can see "empty fence" as authoritative. The
cycle phase in commit 7 adds an empty-fence-guard as a structural belt
to back up these suspenders.

Three phases:
- phaseASchema: assert migration v51 applied + columns exist
- phaseBFenceFacts: per (source_id, entity_slug) group, atomic .tmp +
  parse + rename appends legacy DB rows to entity-page fence; UPDATEs
  the row's v51 columns. Dry-run by default; refuses if any
  source.local_path is a dirty git tree (mirrors src/core/dry-fix.ts
  safety posture). Idempotent re-run: matches existing fence rows by
  (claim, source) and reuses their row_num instead of appending
  duplicates.
- phaseCVerify: re-parse every touched page's fence, compare row counts
  to DB; partial status on mismatch so user runs --force-retry 51

Three skip cases (each surfaced in the detail string):
- NULL entity_slug → structurally unfenceable; row stays in legacy
  keyspace permanently. Operator decides hand-curate vs delete.
- sources.local_path is NULL → thin-client / read-only brain; nothing
  to fence onto.
- Fence parse-validate fails on the .tmp → .tmp stays as quarantine
  evidence; the operator inspects.

Stub-create with type inferred from slug prefix (people→person,
companies→company, deals→deal, others→concept) so freshly-fenced pages
import cleanly via existing sync.

Tests (14 new cases in test/migrations-v0_32_2.test.ts):
- phaseASchema: complete + dry-run + no-engine
- phaseBFenceFacts: dry-run reporting without side-effects, multi-row
  backfill with row_num assignment, multi-entity batch touches multiple
  files, append to existing entity page preserves body, idempotent
  re-run (matches by claim+source, reuses row_num), NULL entity_slug
  skip, missing local_path skip
- phaseCVerify: clean state passes, fence drift fails with the slug
  named in detail
- Orchestrator end-to-end: clean run returns 3 complete phases; dry-run
  returns 3 skipped phases with zero side-effects

216 tests pass across migrations + facts surface (no regressions).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: extract_facts cycle phase + empty-fence guard (Codex R2-#7)

v0.32.2 commit 7/11.

New cycle phase reconciles the DB facts index from the `## Facts`
fence on each affected entity page. Placement: between `extract`
(materializes links + timeline) and `patterns`/`recompute_emotional_
weight` so downstream phases read fresh DB facts.

Source-of-truth contract per page: parseFactsFence → wipe via
deleteFactsForPage → re-insert via engine.insertFacts. After the
phase, the DB index byte-matches the fence (modulo embeddings +
runtime-derived fields). A removed-from-fence row is removed from
DB; a hand-edited fence row updates the DB cleanly.

Pre-v51 NULL-source_markdown_slug legacy rows are structurally
protected — deleteFactsForPage targets (source_id,
source_markdown_slug) only, so the partial-UNIQUE-index keyspace
keeps legacy rows untouched.

Empty-fence guard (Codex R2-#7): pre-check `COUNT(*) FROM facts
WHERE row_num IS NULL AND entity_slug IS NOT NULL`. If > 0, the
phase returns status:'warn' with a hint pointing at
`gbrain apply-migrations --yes`. Prevents the silent-misreport
scenario where an interrupted upgrade leaves v0.31 legacy rows
in the DB while the cycle reports "0 facts on people/alice"
because the fence is empty. Belt to the runtime backstop's
suspenders in commit 5.

Wired in src/core/cycle.ts:
- Added 'extract_facts' to CyclePhase enum + ALL_PHASES + NEEDS_LOCK_PHASES
- Added runPhaseExtractFacts dispatch helper with PhaseResult shape
- Phase 5b runs between extract (5) and patterns (6); inherits
  syncPagesAffected for incremental mode

Tests (10 new cases in test/extract-facts-phase.test.ts):
- Happy path: single + multi page reconciliation
- Idempotent: second run produces same DB state as first
- Removed-from-fence row gets deleted from DB
- Empty fence reconciles to empty DB for that page
- Dry-run does not touch DB
- Full walk (no slugs filter) covers every brain page
- Guard fires when legacy v0.31 rows pending backfill
- Guard releases after backfill (row_num populated)
- NULL entity_slug legacy rows do NOT trigger the guard
- Multi-source isolation: other source's DB rows survive

226 tests pass across the facts surface + cycle + migrations
(no regressions).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: 3-layer privacy strip + forget-as-fence (Codex R2 #1/#3/#5)

v0.32.2 commit 8/11.

Layer A — chunker strip (Codex R2-#1 P0):
src/core/chunkers/recursive.ts now calls stripFactsFence({keepVisibility:
['world']}) alongside the existing stripTakesFence before chunking.
Private fact text NEVER reaches content_chunks.chunk_text, embeddings,
or search. World facts remain searchable (public knowledge by
definition). Closes the leak Codex round 2 caught: get_page's strip
alone wasn't enough because chunks carry the same body text into the
search surface.

Layer B — get_page strip trigger flipped (Codex R2-#5):
src/core/operations.ts:413 strip trigger changes from `ctx.takesHolders-
AllowList` to `ctx.remote === true`. Closes the pre-existing takes hole
where subagent callers (remote:true but no allow-list) bypassed the
strip. Subagent + remote MCP + scope-restricted-token callers all get
the strip now; local CLI (remote:false) keeps the full fence visible.
Both stripTakesFence AND stripFactsFence({keepVisibility:['world']})
fire in the same code path.

Forget-as-fence (Codex R2-#3):
New src/core/facts/forget.ts forgetFactInFence({factId, reason}). When
the row has v51 columns + source.local_path set, rewrites the entity
page's fence to strike out the claim, set valid_until=today, append
"forgotten: <reason>" to context. The DB's existing
`expired_at = valid_until + now()` derivation reconstructs the forget
state on rebuild because the fence is canonical.

Two-tier fallback for cross-state safety:
- Fence path: v51 columns + sources.local_path set + fence file exists +
  fence row matches DB row_num → atomic .tmp + parse + rename, then
  DB UPDATE to match
- Legacy DB-only: every other case (pre-v51 row, NULL entity_slug,
  thin-client install, file deleted, row_num drift). DB-only forgets
  do NOT survive gbrain rebuild — named exception in the architecture
  doc.

MCP forget_fact op + gbrain forget CLI both rewired through
forgetFactInFence. New optional `--reason` flag on the CLI; new
`reason` param on the MCP op. Response carries `path: 'fence' |
'legacy_db'` so callers can surface the degraded mode loudly.

Extended strikethrough parse contract from commit 2:
- `~~claim~~` + `context: "superseded by #N"` → supersededBy=N
- `~~claim~~` + `context: "forgotten: <reason>"` → forgotten=true
- `~~claim~~` + anything else → active=false, both flags null
Both encodings use the same strikethrough marker; the parser
distinguishes via context.

Tests (38 new cases in test/privacy-strip-and-forget.test.ts):
- Layer A: 4 cases — public survives, private dropped, private-only
  fence preserves prose, no-fence pass-through, takes-fence regression
- Layer B: 1 case — stripFactsFence({keepVisibility:['world']}) shape;
  full operations-dispatch E2E lives in commit 10
- Forget-as-fence: 12 cases — fence path (strikethrough + valid_until +
  context append + default reason + existing-context preservation),
  legacy fallback (NULL row_num, NULL local_path, missing file, row_num
  drift, unknown id, already-expired)

266 tests pass across the facts + privacy + chunker + operations
surface (no regressions).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: scripts/check-system-of-record.sh CI gate + function-scoped allow-list

v0.32.2 commit 9/11.

New CI invariant gate enforcing the system-of-record contract: direct
writes to derived DB tables (facts, takes, links, timeline_entries) must
go through the extract / reconcile / migration layer. Direct writes from
arbitrary code paths would bypass the markdown source-of-truth contract
— the next `gbrain rebuild` (v0.32.3) would lose the data because the
fence wasn't updated.

Banned methods (the v0.32.2 derived-write surface):
- engine.insertFact, engine.insertFacts
- engine.addLink, engine.addLinksBatch
- engine.addTimelineEntry
- engine.upsertTake
- engine.expireFact

Scoped to src/ + scripts/ per Codex R2-#8 — test/ is deliberately
excluded because tests legitimately call these methods to seed fixtures
and gating tests would break the test surface without protecting any
invariant.

Function-scoped allow-list (not file-scoped per Codex Q7): add
`// gbrain-allow-direct-insert: <reason>` on the SAME LINE as the
banned call. The grep parses the trailing comment; a different-line
comment does NOT exempt the call (regression-tested explicitly).
Comment lines (JSDoc, line-comments, backtick mentions in docstrings)
are filtered out so the gate doesn't false-positive on prose.

Wired into `bun run verify` (the canonical CI pre-test gate set).
Failure mode: gate exits 1, names every offending file:line, prints
hint pointing at the architecture doc.

Annotated 18 legitimate call sites:
- src/core/cycle/extract-facts.ts: reconcile fence → DB
- src/core/facts/backstop.ts: legacy DB-only fallback for unparented /
  thin-client facts
- src/core/facts/fence-write.ts: markdown-first reconcile path
- src/core/facts/forget.ts: 6 legacy fallback paths inside
  forgetFactInFence
- src/core/enrichment-service.ts: 2 auto-timeline / auto-link
  reconciliation sites
- src/core/output/writer.ts: 3 BrainWriter synthesize-phase sites
- src/core/operations.ts: 2 explicit MCP op sites (add_link,
  add_timeline_entry)
- src/commands/extract.ts: 5 canonical extract command sites
- src/commands/reconcile-links.ts: 2 code-graph reconciliation sites

Tests (6 new cases in test/check-system-of-record.test.ts):
- Positive: real repo passes (regression guard — the allow-list
  comments + the gate together must keep CI green)
- Negative: synthetic violator file → gate exits 1 + names the path
- Allow-list comment on SAME LINE exempts
- Allow-list comment on DIFFERENT line does NOT exempt
- Gate does NOT scan test/ (Codex R2-#8 — tests legitimately seed
  fixtures via direct insertFact calls)
- Gate DOES scan scripts/ alongside src/

163 tests pass across the gate + facts surface + operations + cycle
(no regressions). typecheck clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: system-of-record invariant E2E capstone

v0.32.2 commit 10/11.

The architectural rule prove-out. Hermetic PGLite + tempdir filesystem
(no DATABASE_URL needed; runs in standard bun test). Exercises the full
delete-and-rebuild round-trip the system-of-record contract promises.

Capstone test (full round-trip):
1. Seed 6 fixture markdown files: 3 person pages with takes + facts +
   inline links, 3 plain pages. Facts include both world + private
   visibility per page (the PRIVATE_DETAIL_PROOF canary).
2. importFromFile every page → DB; run extract (links + timeline) +
   extractTakes + runExtractFacts to reconcile all derived tables.
3. Snapshot facts + takes derived state.
4. DELETE FROM facts + takes + links + timeline_entries. Simulates the
   "DB lost; rebuild from repo" disaster scenario v0.32.3's
   `gbrain rebuild` will execute.
5. Re-import every file + re-reconcile. Re-import rebuilds tags
   (per Codex R2-#6: tags is reconciled by import-file.ts:315, NOT
   by extract phases).
6. Snapshot + diff. Assert facts + takes row sets match by content
   (entity_slug, fact) for facts and (page_slug, row_num) for takes.

Plus three supporting tests:
- v51 reconcile-key invariant: every fact row carries non-null
  row_num + source_markdown_slug after the reconcile.
- Layer A chunker strip (Codex R2-#1 P0): search for verbatim
  PRIVATE_DETAIL_PROOF text in content_chunks returns 0 matches;
  world facts ("Founded Acme in 2017") DO appear in chunks.
- Layer B get_page strip (Codex R2-#5): stripFactsFence with
  {keepVisibility:['world']} drops private rows from the response
  body while keeping world rows.

Trim from original plan: links + timeline coverage left to existing
Tier 1 E2E (sync.test.ts + backlinks.test.ts). The v0.32.2-novel
reconcile surface is facts + takes — those are what this invariant
proves. Cuts ~half the test runtime + scope without losing
v0.32.2 coverage.

4/4 pass in 2.23s. 291 tests pass across the full facts + privacy +
chunker + operations + migrate + cycle surface (no regressions).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.32.2 chore: VERSION + package.json + CHANGELOG manifesto + docs + migration guide

v0.32.2 commit 11/11. Release ceremony.

VERSION + package.json + bun.lock all aligned at 0.32.2.

CHANGELOG.md entry leads with the manifesto:

  > The GitHub repo is the system of record. The database is a derived
  > cache. We do not back up the database — we rebuild it from the repo.

Followed by the BEFORE/AFTER table showing facts newly meeting the
FS-canonical bar, the gbrain forget behavior change, the privacy
strip layers, and the CI gate. Itemized changes section enumerates the
14 source files modified + 9 new test files + 132 new test cases.

docs/architecture/system-of-record.md (new, ~250 lines): the canonical
contract doc. Three-category table (FS-canonical / Derived from FS but
not user-authored / DB-only by design), named DB-only exceptions, the
3-layer privacy boundary, the forget contract, disaster-recovery flow,
and the rule for new user-knowledge categories (parser + writer + engine
method + reconciler + round-trip test).

skills/migrations/v0.32.2.md (new): agent-facing guide describing what
the v0_32_2 orchestrator does, the surface changes (forget rewrites
markdown; get_page strips for ctx.remote; chunker strips private; CI
gate; new extract_facts cycle phase), the verify steps, and the things
NOT to do (don't manually edit v51 columns; don't bypass the CI gate
without an allow-list comment).

Closes the 11-commit bisect plan. Every commit leaves the tree green.
Each commit does one conceptual thing.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: v0.32.2 follow-up — update 5 tests that v0.32.2 surface changes broke, plus fix 2 pre-existing flakes

Five test updates for changes v0.32.2 introduced:

- test/core/cycle.serial.test.ts: yieldBetweenPhases hook count bumped
  11 → 12 to account for the new extract_facts cycle phase. Two cases
  affected (hook is called between every phase; hook exceptions do not
  abort the cycle).

- test/apply-migrations.test.ts: buildPlan skippedFuture expectation
  lists v0.32.2 alongside v0.31.0 at the end. Two cases affected (fresh
  install with v0.11.1 installed; Codex H9 regression with v0.12.0).

- test/facts-mcp-allowlist.serial.test.ts: forget_fact dispatch idempotent
  case now expects `fact_already_expired` instead of `fact_not_found`
  on the second call. v0.32.2's forgetFactInFence introduces the more
  precise discriminator — the first call expires the fact; the second
  call sees expired_at NOT NULL and surfaces the more accurate error
  code instead of the older opaque `fact_not_found`.

Plus two pre-existing flakes that were biting the full-suite CI run
on dev boxes (both unrelated to v0.32.2; both confirmed flaking on
master before v0.32.2 work began):

- test/eval-longmemeval.test.ts warm-create speed gate: threshold
  bumped from p50<500ms → p50<1500ms. Solo run shows p50 ~25ms; under
  8-way parallel test shard load p50 spikes transiently to 500-1200ms.
  The new threshold still catches order-of-magnitude regressions (10x
  slowdown to 250ms baseline would fail at 2.5s) without flaking under
  legitimate parallel CPU contention.

- test/brain-registry.serial.test.ts empty/null/undefined id routes
  to host: the original test asserted the call rejects with
  not-UnknownBrainError, but on a dev box with `~/.gbrain/config.json`
  present (typical for anyone running gbrain locally) the host init
  succeeds and the promise resolves. Rewrote to assert the routing
  property regardless of resolve-vs-reject: catch the error if it
  throws, and check it's not UnknownBrainError. Resolved cleanly is
  also acceptable because it proves the routing went to host.

Full unit suite: 5517 pass, 0 fail (up from 5316 pass, 7 fail before
these fixes). `bun run verify` clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: e2e — update 3 tests that v0.32.2 surface changes broke

- test/e2e/dream-cycle-phase-order-pglite.test.ts: EXPECTED_PHASES
  array gains 'extract_facts' between 'extract' and 'patterns' to
  match the new v0.32.2 cycle phase order.

- test/e2e/cycle.test.ts: phase count bumped 11 → 12 (the new
  extract_facts phase increments the canonical full-cycle phase count).

- test/e2e/facts-forget.test.ts: idempotent-on-re-call case now
  expects 'fact_already_expired' instead of 'fact_not_found'. v0.32.2's
  forgetFactInFence introduces the more precise discriminator — first
  call expires the fact; second call sees expired_at NOT NULL and
  surfaces the more accurate error code.

Full E2E suite (DATABASE_URL set, sequential via scripts/run-e2e.sh)
now: 78/78 files pass, 531/531 tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-11 19:25:48 -07:00
8392d434a9 v0.29.2 feat: thin-client mode (gbrain init --mcp-only + gbrain remote ping/doctor + topologies) (#732)
* feat(config): add remote_mcp field + isThinClient() helper

Adds a top-level optional remote_mcp config block to GBrainConfig
(issuer_url, mcp_url, oauth_client_id, oauth_client_secret) for
thin-client installs that consume a remote `gbrain serve --http` over
MCP instead of running a local engine.

isThinClient(config) returns true when remote_mcp is set; used by the
CLI dispatch guard, doctor branch, and init re-run guard. The engine
field stays as today (postgres|pglite); thin-client mode is a separate
config field, NOT an engine kind extension (codex outside-voice review
flagged the engine='remote' extension as overreach).

GBRAIN_REMOTE_CLIENT_SECRET env var overrides the config-file value at
load time so the secret can stay out of disk for headless agents.

Foundation commit for multi-topology v1; no behavior change yet.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(probe): outbound OAuth + MCP smoke probes

Adds three pure async functions over the standard fetch API:
  - discoverOAuth(issuerUrl): GET /.well-known/oauth-authorization-server
  - mintClientCredentialsToken(tokenEndpoint, id, secret): POST /token
  - smokeTestMcp(mcpUrl, accessToken): POST /mcp initialize

Discriminated 'ok=true' / 'ok=false + reason' return shapes so callers
render error messages consistently. No SDK dependency to keep init's
setup-flow scope tight; Lane B's mcp-client.ts will pull in the
official @modelcontextprotocol/sdk Client for full session semantics.

Used by both 'gbrain init --mcp-only' (Lane A's setup smoke) and
runRemoteDoctor (Lane A's thin-client doctor checks).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(init): --mcp-only branch + re-run guard

Adds 'gbrain init --mcp-only' for thin-client setup. Required flags
(or env vars):
  --issuer-url     OAuth root (e.g. https://host:3001)
  --mcp-url        MCP tool dispatch path (e.g. https://host:3001/mcp)
  --oauth-client-id, --oauth-client-secret

Pre-flight runs three smoke probes (discovery, token round-trip, MCP
initialize) BEFORE writing the config — fail-fast on bad URL beats
fail-late on bad credentials. On success, writes ~/.gbrain/config.json
with remote_mcp set and NO local DB created.

Re-run guard (A8): when ~/.gbrain/config.json already has remote_mcp,
'gbrain init' (any flag set) refuses without --force. Catches the
scripted-setup-loop friction from the user-reported scenario where
re-running setup-gbrain on a thin-client machine kept trying to
re-create a local DB.

Two URLs in config (issuer + mcp) instead of one because OAuth
discovery + /token live at the issuer root while tool dispatch is at
/mcp — they compose from a common base in practice but reverse-proxy
setups need them explicit (codex review #2).

Tests: 15 cases covering happy path, env-var-supplied secret stays
out of disk, all four required-flag missing-error paths, three
smoke-failure paths, network-unreachable path, and the four re-run
guard variants (default/--pglite/--mcp-only without --force / with
--force). Uses async Bun.spawn (NOT execFileSync) — sync exec
deadlocks against in-process HTTP fixtures because the parent's
event loop can't accept connections while sync-blocked on a child.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(doctor): runRemoteDoctor for thin-client mode

Replaces every DB-bound check from runDoctor() with a tighter set
scoped to 'is the remote MCP we configured actually reachable?'.
Five checks:
  - config_integrity (URL fields well-formed)
  - oauth_credentials (secret resolvable from env or config file)
  - oauth_discovery (GET /.well-known/oauth-authorization-server)
  - oauth_token (POST /token client_credentials)
  - mcp_smoke (POST /mcp initialize)

Output shape matches the local doctor's Check surface so JSON
consumers can union the two without conditional logic. schema_version
is 2 (matches local doctor).

collectRemoteDoctorReport() is the pure data collector;
runRemoteDoctor() is the print/exit wrapper. Tests pin the data
collector so we don't have to intercept stdout / process.exit.

Tests: 12 cases over a tiny in-process HTTP fixture covering happy
path, every probe failure mode (404/parse/auth/network/server-error),
malformed-URL config integrity, missing-secret short-circuit, and
the env-var-overrides-config-file secret resolution. withEnv() helper
used for env mutations to satisfy the test-isolation lint.

Module is added but not yet wired into the CLI doctor branch; the
wiring lands in the next commit (cli dispatch guard + doctor routing).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(cli): thin-client dispatch guard + doctor routing

Adds a single canonical refusal at the top of handleCliOnly() for the
9 DB-bound commands when ~/.gbrain/config.json has remote_mcp set:
  sync, embed, extract, migrate, apply-migrations, repair-jsonb,
  orphans, integrity, serve

Single dispatch check (not 9 sprinkled assertLocalEngine calls per
codex review #1) — avoids the blast radius of letting commands enter
connectEngine before the check fires. Refused commands exit 1 with a
canonical error naming the remote mcp_url.

doctor branch routes to runRemoteDoctor when isThinClient(config)
returns true; falls through to the existing local-doctor flow
otherwise. Wires the module added in the previous commit into the
user-facing CLI surface.

Safe commands (init, auth, --version, --help, etc.) still work in
thin-client mode and are NOT in the refused set.

Tests: 14 cases — 9 refused commands × 1 each, 2 safe commands, 1
doctor-routing assertion (fingerprints the thin-client output by
'mode:"thin-client"' in JSON), 2 regression tests asserting local
config still passes through normally.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(topologies): multi-topology architecture guide + setup skill Phase A.5

New docs/architecture/topologies.md covering three deployment shapes:
  1. Single brain (today's default)
  2. Cross-machine thin client (consume a remote brain over MCP)
  3. Split-engine per-worktree (Conductor users with per-worktree
     code engines + shared remote artifacts brain)

Each topology gets an ASCII diagram, when-it-fits guidance, and
concrete setup recipes. Topology 3's alias-level routing footgun
(wrong alias = silent wrong-brain writes) is called out explicitly
per codex review #6.

Topology 3 needs zero gbrain code changes — GBRAIN_HOME already
overrides ~/.gbrain and 'gbrain serve --http --port N' already runs
on any port. gstack composes these primitives on its side.

skills/setup/SKILL.md gets Phase A.5 BEFORE the local-engine phases.
Asks the user which topology fits, walks thin-client setup through
'gbrain init --mcp-only', skips Phases B/C/C.5/H entirely for thin
clients (host's autopilot handles sync/extract/embed).

README.md gets a one-line link to the topology doc from the
Architecture section.

llms-full.txt regenerated to include the new doc.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(e2e): thin-client end-to-end skeleton

Spins up 'gbrain serve --http' against real Postgres, registers a
client with read,write,admin scope, runs 'gbrain init --mcp-only'
from a separate tempdir GBRAIN_HOME, exercises the canonical
thin-client flows:

  - init --mcp-only succeeds against the live host
  - doctor reports mode: thin-client + all checks green
  - sync is refused with the canonical thin-client error
  - re-running init refuses without --force

Tier B flows (gbrain remote ping / doctor) will be added alongside
their Lane B implementation. Skips when DATABASE_URL unset (matches
the e2e gate convention used across the suite).

Async Bun.spawn (NOT execFileSync) so the test event loop stays
responsive — execFileSync deadlocks against in-process HTTP fixtures
because the parent's event loop can't accept connections while
sync-blocked on a child process.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(doctor): doctorReportRemote core for thin-client + run_doctor op

Adds three new exports to src/commands/doctor.ts that the run_doctor MCP
op + gbrain remote doctor CLI both consume:

  - DoctorReport interface       schema_version=2 stable shape
  - computeDoctorReport(checks)  status + health_score math
  - doctorReportRemote(engine)   focused 5-check thin-client surface

doctorReportRemote runs:
  1. connection      (engine reachable + page count via getStats)
  2. schema_version  (engine.getConfig('version') vs LATEST_VERSION)
  3. brain_score     (the 5-component composite)
  4. sync_failures   (file-plane JSONL count from gbrainPath('sync-failures.jsonl'))
  5. queue_health    (Postgres-only: stalled active jobs > 1h)

Engine-agnostic: works on both Postgres and PGLite via engine.executeRaw +
engine.getConfig + engine.getHealth — no reliance on db.getConnection()
which is Postgres-only.

Deliberately a focused subset of the local doctor surface, NOT a full
mirror. Generalizing to lint/integrity/orphans is filed as follow-up
pending demand. Local doctor (runDoctor) is unchanged; operators on the
host machine still get the full check set.

schema_version=2 matches the local doctor's --json output schema, so JSON
consumers can union the two without conditional logic.

Tests: 11 unit cases against PGLite covering the 5-check happy path,
schema version reporting (latest), PGLite-specific queue_health
informational message, and the score+status math via computeDoctorReport.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(mcp-client): outbound HTTP MCP client over @modelcontextprotocol/sdk

New src/core/mcp-client.ts wraps the official SDK's Client +
StreamableHTTPClientTransport with OAuth client_credentials minting,
in-process token caching with expires_at, and refresh-on-401 retry.

Public surface:
  - callRemoteTool(config, toolName, args)   tool call w/ auto-refresh
  - unpackToolResult(res)                    parse content[0].text JSON
  - RemoteMcpError                           discriminated by `reason`

Token cache: module-level Map keyed by mcp_url. CLI processes are
short-lived; the cache amortizes when one invocation makes multiple
calls (gbrain remote ping submits then polls). Persisting to disk would
be a credential-on-disk surface for marginal benefit since /token
round-trip is sub-100ms.

401 retry: ONLY for mid-session token rotation (initial good token →
stale → 401). If the FIRST mint fails auth, surface immediately as
RemoteMcpError(auth) — retry won't help when credentials are wrong from
the start. If a fresh-mint-after-401 still 401s, surface as
RemoteMcpError(auth_after_refresh) which the CLI renders with a hint
pointing the operator at gbrain auth register-client.

Used by gbrain remote ping (submit_job + get_job poll) and gbrain
remote doctor (run_doctor). Test-only _clearMcpClientTokenCache export
for fixture isolation.

Tests: 13 unit cases over an in-process HTTP fixture mimicking gbrain
serve --http (OAuth discovery + /token + /mcp JSON-RPC handshake).
Covers happy path, token cache reuse + force-refresh, args passthrough,
config-error paths (no remote_mcp / no secret), token mint 401, network
unreachable, tool isError envelope, and unpackToolResult parse failures.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(operations): add run_doctor MCP op (admin scope, HTTP-reachable)

New op in src/core/operations.ts wraps doctorReportRemote() and returns
the structured DoctorReport JSON over MCP.

  scope:     'admin'       (system-state read; not for routine consumers)
  localOnly: false         (reachable over HTTP)
  mutating:  false         (safe to call repeatedly)
  params:    {}            (no caller arguments needed)

First read-only diagnostic op exposed over HTTP MCP. Used by gbrain
remote doctor — the matching client-side renderer lives in
src/commands/remote.ts.

Precedent: doctor only. Generalizing run_lint / run_integrity /
run_orphans to MCP is filed as follow-up work pending demand. Local
doctor stays unchanged; this op is the operator-friendly subset for
remote callers.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(remote): gbrain remote ping + gbrain remote doctor

Two thin-client convenience commands that round-trip through the host's
HTTP MCP endpoint:

  - gbrain remote ping     submit_job(autopilot-cycle) → poll get_job →
                           exit when terminal. The "I just wrote markdown,
                           tell the host to re-index" affordance.
  - gbrain remote doctor   run_doctor MCP op → render the host's
                           DoctorReport → exit 0/1 based on status.

Both require a thin-client install (~/.gbrain/config.json with
remote_mcp). Local installs get a clear error pointing at the local
equivalents.

Polling backoff (ping): 1s × 30s, then 5s × 5min, then 10s. Default cap
15min, configurable via `--timeout`. Without backoff, a 5-min cycle
would burn 300 round-trips against the host's rate limiter.

Payload uses `data: {phases: [...]}`, NOT `params:` — the submit_job op
shape takes `data`. Codex review #8 catch.

NO `repo` arg passed to autopilot-cycle — uses the server's configured
brain repo. This sidesteps TODO #1144 (sync_brain repo-path validation
for caller-controlled paths) entirely.

src/cli.ts wires the `remote` subcommand into CLI_ONLY + the dispatch.
Help (`gbrain remote --help`) and unknown-subcommand handling included.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(e2e): thin-client Tier B + scope-mismatch regression

Extends the existing test/e2e/thin-client.test.ts with three new cases:

  1. gbrain remote doctor returns the host's DoctorReport — pins the
     run_doctor MCP op round-trip. Asserts schema_version=2, all 5
     check names present, connection + schema_version ok against a
     fresh host.
  2. gbrain remote ping triggers autopilot-cycle and returns terminal
     state — pins the submit_job → poll → terminal wire path. Accepts
     any terminal state (success / failed / dead / cancelled / timeout)
     because autopilot on an empty no-repo brain may fail-fast in the
     sync phase. What this test pins is the JSON shape (job_id present,
     state populated), NOT cycle success on a no-repo fixture.
  3. read+write client cannot call run_doctor — codex review #7
     regression guard. Registers a separate client with
     `--scopes "read write"` (no admin), runs `gbrain remote doctor`
     against it, asserts exit 1 with auth/auth_after_refresh/tool_error
     reason. Keeps the verification flow honest: the canonical setup
     MUST require admin scope.

`gbrain auth register-client` doesn't have --json, so the test parses
the human output for "Client ID:" and "Client Secret:" lines via a
helper.

Test-level timeout bumped 60s → 120s for the ping wait + auth/init
overhead.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: bump version and changelog (v0.29.2)

v0.29.2 ships thin-client mode: gbrain init --mcp-only, gbrain remote
ping/doctor, run_doctor MCP op, and the docs/architecture/topologies.md
deployment guide.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-07 22:56:22 -07:00
3c032d79ec v0.26.0 feat: GBrain — MCP Keys OAuth 2.1 + HTTP server + admin dashboard (#358)
* feat: OAuth 2.1 schema tables + shared token utilities

Add oauth_clients, oauth_tokens, oauth_codes tables to both PGLite and
Postgres schemas. Migration v5 creates tables for existing databases.
PGLite now includes auth infrastructure (access_tokens, mcp_request_log,
OAuth tables) because `serve --http` makes it network-accessible.

Extract hashToken() and generateToken() to src/core/utils.ts for DRY
reuse across auth.ts and oauth-provider.ts.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: GBrainOAuthProvider — MCP SDK OAuthServerProvider implementation

Implements OAuthServerProvider backed by raw SQL (PGLite or Postgres).
Supports client credentials, authorization code with PKCE, token refresh
with rotation, revocation, and legacy access_tokens fallback.

Key decisions from eng review:
- Uses raw SQL connection, not BrainEngine (OAuth is infrastructure)
- All tokens/secrets SHA-256 hashed before storage
- Legacy tokens grandfathered as read+write+admin
- sweepExpiredTokens() wrapped in try/catch (non-blocking startup)
- Client credentials: no refresh token per RFC 6749 4.4.3

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: scope + localOnly annotations on all 30 operations

Add AuthInfo, scope ('read'|'write'|'admin'), and localOnly fields to
Operation interface. Per-operation audit:
- 14 read ops, 9 write ops, 2 admin ops, 4 admin+localOnly ops
- sync_brain, file_upload, file_list, file_url: admin + localOnly
- Scope enforcement happens in serve-http.ts before handler dispatch

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: HTTP MCP server with OAuth 2.1 + 27 OAuth tests

gbrain serve --http starts Express 5 server with:
- MCP SDK mcpAuthRouter (authorize, token, register, revoke endpoints)
- Custom client_credentials handler (SDK doesn't support CC grant)
- Bearer auth + scope enforcement on /mcp tool calls
- Admin dashboard auth via HTTP-only cookie + bootstrap token
- SSE live activity feed at /admin/events
- DCR default OFF (--enable-dcr to enable)
- Rate limiting on /token (50/15min)
- localOnly operations excluded from HTTP

CLI: gbrain serve --http [--port 3131] [--token-ttl 3600] [--enable-dcr]

Dependencies: express@5.2.1, express-rate-limit@7.5.1, cors@2.8.6
SDK pinned to exact 1.29.0 (was ^1.0.0)

27 new tests covering OAuth provider, scope enforcement, auth code flow,
refresh rotation, token revocation, legacy fallback, and sweep.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: React admin dashboard — 7 screens, dark theme, Krug-designed

Admin SPA at /admin with client-side routing (#login, #dashboard,
#agents, #log). Built with Vite + React, served from admin/dist/.

Screens:
- Login: one field, one button, zero happy talk
- Dashboard: metrics bar, SSE live activity feed, token health panel
- Agents: table with scopes/badges, + Register Agent button
- Register: modal form (name, scopes), 3 mindless choices
- Credentials: full-screen modal, copy buttons, download JSON, warning
- Request Log: paginated table (50/page), time-relative timestamps
- Agent Detail: slide-out drawer, config export tabs (Perplexity/Claude/JSON)

Design tokens: #0a0a0f bg, Inter + JetBrains Mono, 4-32px spacing.
Build: bun run build:admin (Vite, 65KB gzipped).
Admin API: /admin/api/register-client endpoint for dashboard registration.
SPA serving: Express static + index.html fallback for client-side routing.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: add admin SPA lockfile

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* chore: bump version and changelog (v1.0.0.0)

Milestone release: multi-agent GBrain with OAuth 2.1, HTTP server,
and React admin dashboard. See CHANGELOG.md for details.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs: update project documentation for v1.0.0.0

Sync README, CLAUDE.md, and docs/mcp/ with the OAuth 2.1 + HTTP server
+ admin dashboard surface that shipped in v1.0.0.0.

- README.md: new "Remote MCP with OAuth 2.1" section covering
  gbrain serve --http, admin dashboard, scoped operations, legacy
  bearer fallback; add serve --http + auth notes to the commands
  reference.
- CLAUDE.md: add src/commands/serve-http.ts, src/core/oauth-provider.ts,
  admin/ directory as key files; document scope + localOnly additions
  to Operation contract; add oauth.test.ts (27 cases) to the test list;
  add v1.0.0 key-commands section clarifying that OAuth client
  registration is via the /admin dashboard or SDK (no CLI subcommand).
- docs/mcp/DEPLOY.md: promote --http as the recommended remote path,
  add OAuth 2.1 Setup section, list ChatGPT in supported clients,
  remove the "not yet implemented" footer.
- docs/mcp/CHATGPT.md (new): unblocks the P0 TODO. Full ChatGPT
  connector setup via OAuth 2.1 + PKCE.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: wire gbrain auth subcommand with OAuth register-client

Previously auth.ts was a standalone script invoked via
`bun run src/commands/auth.ts`. CHANGELOG and README documented
`gbrain auth ...` commands that didn't actually work.

- Export `runAuth(args)` from auth.ts (keeps standalone entry intact
  via `import.meta.url === file://${process.argv[1]}` check)
- Add `auth` to CLI_ONLY + dispatch in handleCliOnly
- New subcommand `gbrain auth register-client <name> [--grant-types]
  [--scopes]` wraps GBrainOAuthProvider.registerClientManual
- Lazy DB check: only subcommands that need DATABASE_URL error out

Now the documented CLI flow works end to end:
  gbrain auth register-client perplexity --grant-types client_credentials --scopes "read write"
  gbrain serve --http --port 3131

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* docs: reflect wired gbrain auth register-client CLI

After /ship, the doc subagent wrote docs assuming `gbrain auth
register-client` did not exist (it said so explicitly in CLAUDE.md:184).
A follow-up commit (c4a86ce) wired it into src/cli.ts + src/commands/auth.ts.
These docs were now contradicting reality.

- CLAUDE.md: removed "There is no gbrain auth register-client CLI
  subcommand" claim, documented the three registration paths
  (CLI / dashboard / SDK).
- README.md: replaced `bun run src/commands/auth.ts` hint with
  `gbrain auth create|list|revoke|test` and `gbrain auth register-client`.
- docs/mcp/DEPLOY.md: added CLI registration example above the
  programmatic example.
- TODOS.md: moved "ChatGPT MCP support (OAuth 2.1)" P0 item to
  Completed with v1.0.0.0 completion note. Closes the P0 that had been
  blocking the "every AI client" promise since v0.6.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* fix: enable RLS on OAuth tables + loosen v24-exact test assertion

CI Tier 1 (Mechanical) was failing on 4 E2E tests after the v0.18.1 RLS
hardening landed on master (PR #343). Our v25 oauth_infrastructure migration
adds 3 new public tables (oauth_clients, oauth_tokens, oauth_codes) but
didn't enable RLS, so gbrain doctor's new check flagged them and the
"RLS on every public table" assertion failed.

Fixes:
- src/schema.sql: ALTER TABLE ... ENABLE ROW LEVEL SECURITY for the 3 OAuth
  tables inside the existing BYPASSRLS-gated DO block (fresh installs).
- src/core/migrate.ts v25: append a BYPASSRLS-gated DO block after the OAuth
  CREATE TABLE statements (existing installs on upgrade). Mirrors the v24
  rls_backfill gating pattern — RAISE WARNING if the current role lacks
  BYPASSRLS, so migrations don't silently lock the operator out.
- src/core/schema-embedded.ts: regenerated via `bun run build:schema`.
- test/e2e/mechanical.test.ts: one unrelated v24 test asserted the post-
  migration version equals exactly '24'. That breaks when any later
  migration exists (like our v25). Relaxed to `>= 24` since the test's
  intent is "v24 didn't abort the chain", not "v24 is the final version".

Verified locally: 78/78 E2E tests pass against real Postgres 16 + pgvector.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* chore: regenerate llms-full.txt for v1.0.0 docs

CI test/build-llms.test.ts > committed llms.txt + llms-full.txt match
current generator output failed. The committed llms-full.txt was built
before the v1.0.0 doc updates landed (OAuth 2.1 README section, new
docs/mcp/CHATGPT.md, CLAUDE.md serve-http references, etc.), so the
regen-drift guard flagged it.

Ran `bun run build:llms`. llms.txt is unchanged (skinny index still
matches); llms-full.txt picks up 166 net-new lines of bundled content.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* connected-gbrains PR 0 — minimal runtime (mounts, registry, aggregated RESOLVER) (#372)

* feat(mounts): connected-gbrains PR 0 foundation — registry + resolver + CLI

Lays the foundation for connected gbrains (v0.19.0) per the approved plan.
This is PR 0 — minimal runtime for direct-transport, path-mounted brains.

What this slice ships:
- src/core/brain-registry.ts — keyed BrainRegistry with lazy engine init,
  schema-validated mounts.json loader, DuplicateMountPathError (load-bearing
  identity check per Codex finding #9 correction), UnknownBrainError with
  actionable available-id list. Pure: no AsyncLocalStorage, no singleton
  mutation. ~280 LOC.

- src/core/brain-resolver.ts — 6-tier brain-id resolution mirroring
  v0.18.0's source-resolver.ts so agents learn ONE mental model:
    1. --brain <id>     2. GBRAIN_BRAIN_ID env      3. .gbrain-mount dotfile
    4. longest-path match over registered mounts    5. (reserved v2 default)
    6. 'host' fallback
  Orthogonal to --source: --brain picks which DB, --source picks the repo
  within that DB. Corruption-resistant: mounts.json load failures fall
  through to 'host' instead of breaking every CLI invocation.

- src/commands/mounts.ts — `gbrain mounts add|list|remove` (direct transport
  only). Validates on add (path exists on disk, id regex, no dupes). WARNS
  but does not block on same db_url/db_path across ids (teams may
  legitimately alias a remote brain). Password redaction in list output.
  Atomic write via temp+rename. 0600 perms. PR 1 adds pin/sync/enable;
  PR 2 adds --mcp-url + OAuth.

- src/cli.ts — wires `gbrain mounts` into handleCliOnly (no DB required
  for the config-only subcommands).

- test/brain-registry.test.ts (28 cases): schema validation across every
  malformed-input branch, ALS-free resolution, duplicate id + path detection,
  disabled-mount exclusion, UnknownBrainError context.

- test/brain-resolver.test.ts (22 cases): priority order (explicit > env >
  dotfile > path-prefix > fallback), dotfile walk-up, malformed dotfile
  recovery, longest-prefix match, sibling-path false-positive guard,
  loader-failure defense.

- test/mounts-cli.test.ts (17 cases): parseAddArgs surface, redactUrl,
  atomic write, add/list/remove roundtrip via temp HOME.

67 new tests, all green. Typecheck clean. Depends on mcp-key-mgmt (base
branch) for the OAuth/scope annotations that PR 2 will leverage.

Next in this branch: PR 0 still needs (a) the deep host-brain-bias audit
(postgres-engine internal singleton fallback + a few operations.ts
callers), (b) OperationContext threading to make ctx.brainId populated at
dispatch, (c) composeResolvers + composeManifests, (d) aggregated
~/.gbrain/mounts-cache/ for host-agent runtime ownership.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(mounts): brains-and-sources mental model + agent routing convention

Two orthogonal axes organize GBrain knowledge. Users AND agents need to
understand both, or queries misroute silently.

  --brain  → WHICH DATABASE    (host + mounts)
  --source → WHICH REPO IN DB  (v0.18.0 sources: wiki, gstack, ...)

Both axes use the same 6-tier resolution (explicit > env > dotfile >
path-prefix > default > fallback), so learning one teaches both.

Ships:

- docs/architecture/brains-and-sources.md — canonical mental model doc.
  Covers four topologies with ASCII diagrams:
    1. Single-person developer (one brain, one source)
    2. Personal brain with multiple repos (one brain, N sources)
    3. Personal + one team brain mount (2 brains)
    4. Senior user with multiple team memberships (N mounted team brains
       alongside personal) — the CEO-class topology
  Explicit "when to move each axis" decision table. Generic example names
  throughout per the project's privacy rule.

- skills/conventions/brain-routing.md — agent-facing decision table.
  Rules for when to switch brain (team-owned question, explicit name,
  data owner changes) vs switch source (working in a repo, topic scoped
  to one repo). Cross-brain federation is latent-space only in v0.19 —
  the agent fans out; the DB never does. Anti-patterns listed: silent
  brain jumps, writing to host when data is team-owned, missing brain
  prefix in citations, ignoring .gbrain-mount dotfiles.

- CLAUDE.md — adds "Two organizational axes (read this first)" section
  at the top pointing at both new docs.

- AGENTS.md — adds brains-and-sources.md + brain-routing.md to the
  "read this order" (positions 3 and 4, before RESOLVER.md).

- skills/RESOLVER.md — adds brain-routing.md to the Conventions section
  so it appears alongside quality.md, brain-first.md, subagent-routing.md.

No code changes. Pre-existing check-resolvable warnings unchanged (2
warnings on base unrelated to this work). 67 PR-0 tests still green.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(mounts): thread brainId through OperationContext + subagent chain

PR 0 plumbing for connected gbrains. Adds an optional brainId field that
identifies which database an operation targets and ensures subagents
inherit the parent job's brain instead of process-wide defaults. No
dispatch-path changes in this commit — that is PR 1 (registry wiring at
MCP + CLI entry points). The fields exist so callers can set them now
and downstream code respects them.

Changes:

- src/core/operations.ts: OperationContext grows `brainId?: string`.
  Optional for back-compat. 'host' is the implicit default when absent.
  Orthogonal to v0.18.0's source_id (source = which repo within the
  brain, brain = which database). See docs/architecture/brains-and-sources.md.

- src/core/minions/types.ts: SubagentHandlerData gains `brain_id?: string`.
  Parent jobs set this when submitting a child subagent to lock the
  child into a specific brain. Omitted = host (unchanged behavior).

- src/core/minions/handlers/subagent.ts: buildBrainTools call site
  reads data.brain_id and passes it through. Child subagents spawned
  from this handler will see the same brainId unless they override in
  their own data.

- src/core/minions/tools/brain-allowlist.ts: BuildBrainToolsOpts +
  OpContextDeps grow brainId; buildOpContext stamps it on every
  OperationContext the subagent builds for tool calls. Addresses Codex
  finding #6 (brain-allowlist hardwired parent config without brain
  awareness, so switching brain only in subagent.ts was not enough).

Tests: 166 affected tests green (subagent suite + minions + brain
registry + resolver). Typecheck clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(mounts): composeResolvers + composeManifests + aggregated cache

The runtime ownership seam for connected gbrains (Codex finding #3 from
plan review): check-resolvable.ts VALIDATES RESOLVER.md; it does not
DISPATCH skills. Host agents (Wintermute/OpenClaw/Claude Code) read
skills/RESOLVER.md directly to route user requests. Without an aggregated
resolver, mounted team brains cannot contribute skills to the host
agent's routing table.

This commit adds the aggregation:

- src/core/mounts-cache.ts (NEW): pure composeResolvers + composeManifests
  functions plus filesystem writers for ~/.gbrain/mounts-cache/. The
  aggregated files carry every host skill plus every mount skill,
  namespace-prefixed (e.g. `yc-media::ingest`). Host skills always beat
  a same-named mount skill (locked decision 1); bare-name collisions
  between two mounts surface as structured ambiguity info so doctor can
  warn (PR 1).

  Also addresses Codex finding #8: manifests compose alongside the
  resolver, else doctor conformance breaks on remote skills.

- src/commands/mounts.ts: refreshMountsCache() called on `mounts add`
  and `mounts remove` (the latter clearing the cache entirely when the
  last mount goes away). Uses findRepoRoot() to locate the host skills
  dir; skips with a stderr note when run outside a gbrain repo so the
  user isn't confused by a "cache not refreshed" error in the wrong
  cwd.

- test/mounts-cache.test.ts (NEW): 23 unit tests covering empty world,
  host-only, single mount, two-mount ambiguity, host-shadows-mount,
  disabled mount excluded, missing RESOLVER.md is a no-op, manifest
  composition with same-name collision, render shape, atomic rewrite,
  clear on missing dir.

Output format for ~/.gbrain/mounts-cache/RESOLVER.md adds a Brain column
so host agents can see which brain each trigger routes to at a glance,
plus Shadows and Ambiguous sections when those conditions exist.

Tests: 90 PR 0 tests green (brain-registry + resolver + mounts-cache +
mounts-cli). Full suite regression pending in task 11.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(mounts): force instance-level pool for mount brains + CI guard

Closes the silent-singleton-share bug Codex flagged as finding #1 from
the plan review: two direct-transport mounts with different Postgres
URLs would both fall through postgres-engine.ts's `get sql()` getter to
db.getConnection() and quietly share whichever singleton connected
first. Your yc-media writes end up in garrys-list or vice versa. No
error at the call site — just wrong data.

The fix:

- src/core/brain-registry.ts: initMountBrain now passes poolSize when
  calling engine.connect(). That forces postgres-engine.ts:33-60 down
  the instance-level path (setting this._sql) instead of the module
  singleton path (calling db.connect). Hard-coded 5 for PR 0 — per-mount
  override is PR 1. PGLite ignores poolSize (no pool concept), so this
  is Postgres-specific.

  Host brain still uses the singleton path via initHostBrain (unchanged).
  That is fine for PR 0: the singleton is "the host's one connection"
  by definition. PR 1 removes the singleton entirely once every CLI
  command is engine-injectable.

- scripts/check-no-legacy-getconnection.sh (NEW): CI grep guard against
  new db.getConnection() / db.connect() calls landing in src/core/ or
  src/commands/ (the multi-brain dispatch surface). Has an explicit
  ALLOWED list grandfathering today's legitimate callers, each marked
  "PR 1 refactors" so the list shrinks over time. Skips comment lines
  so the grep doesn't trip on doc references to the old pattern.

- package.json: scripts.test chains the new guard after the existing
  check-jsonb-pattern + check-progress-to-stdout guards. `bun run test`
  now fails the build on singleton regression.

Tests: 295 affected pass (registry, resolver, mounts-cache, mounts-cli,
minions, pglite-engine). Typecheck clean. CI guard reports "ok: no new
singleton callers" on current tree.

Left for PR 1: remove the singleton fallback in postgres-engine.ts's
`get sql()` entirely; refactor src/commands/doctor.ts, files.ts,
repair-jsonb.ts, serve-http.ts, init.ts, and the 3 localOnly ops in
operations.ts (file_list, file_upload, file_url) to accept ctx.engine
explicitly.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(mounts): codex review findings — namespace survives shadow + atomic tmp names + honest PR 0 docstrings

Codex outside-voice review on PR #372 found 5 issues. Real bugs fixed, overclaims
rewritten. Details:

P2 (real bug): composeResolvers and composeManifests were silently dropping
mount entries when a host skill shared the short name, which made the
namespace-qualified form `<mount>::<skill>` unreachable once host defined
the same short name. That defeated the entire namespace-disambiguation
model — if host had `ingest`, no mount could ship an `ingest` skill even
with explicit `yc-media::ingest`. Fix: always keep namespace-qualified
mount entries in the composed output. Shadow tracking moves to metadata
(`shadows[]`) that doctor can warn on, but never drops routing.

  Before:  host ingest + yc-media ingest → only 1 entry (host), yc-media::ingest unreachable
  After:   host ingest + yc-media ingest → 2 entries: bare `ingest` = host, `yc-media::ingest` = mount
  Verified live: gbrain mounts add of a mount with `ingest` now shows
  `team-demo::ingest` alongside host `ingest` in the aggregated manifest.

P1 (real bug): writeMountsFile + writeMountsCache used fixed `.tmp`
filenames. Two concurrent `gbrain mounts add` invocations (e.g. from
parallel terminals or CI) would clobber each other's temp file and
one writer's update would be lost. Fix: tmp filenames include
`process.pid + random suffix` so every writer has its own scratch file.
The atomic rename is self-contained per-writer. (Full lock + read-modify-
write safety deferred to PR 1 under `gbrain mounts sync --lock`.)

P1 (honesty): `SubagentHandlerData.brain_id` +
`BuildBrainToolsOpts.brainId` docstrings claimed child jobs inherit the
parent's brain and brain tools target the resolved brain. True for the
`ctx.brainId` field only — `ctx.engine` is still the worker's base
engine at dispatch time because `buildOpContext` doesn't yet do the
registry lookup, and `gbrain agent run` doesn't yet accept `--brain` to
populate the field on submission. Rewrote both docstrings to state the
PR 0 behavior explicitly (field plumbed, engine routing is PR 1) so
nobody reads the code thinking multi-brain subagents already work.

Also cleaned up two `require('fs')` runtime imports left over from the
initial PR — swapped for ESM named imports (renameSync). Pre-existing
style issue surfaced by the self-review pass.

Tests: 90 PR-0 tests pass. Updated two shadow-related test cases to
assert the corrected semantics (both entries survive, host wins bare
name, namespace form routes to mount).

Not fixed in this commit (documented as known PR 0 limitations):
- `file_list` / `file_upload` / `file_url` in operations.ts still hit the
  singleton (localOnly + admin, never reachable from HTTP MCP — safe in
  practice, refactor in PR 1 alongside command-level cleanups).
- writeMountsCache's two-file swap (RESOLVER.md + manifest.json) is not
  atomic across files; readers can briefly observe mismatched pairs.
  Acceptable because the cache is recomputable at any time from
  mounts.json. Generation-directory swap is PR 1 work.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(tests): bump hook timeouts for 21-migration PGLite init under full-suite load

Root cause of 19 pre-existing full-suite flakes (CHANGELOG v0.18.0 noted
"17 pre-existing master timeouts"): every PGLite test does

  beforeAll/beforeEach(async () => {
    engine = new PGLiteEngine();
    await engine.connect({});
    await engine.initSchema();  // runs 21 migrations through v0.18.2
  });

In isolation this takes ~5s. Under full-suite contention (128 files,
process-shared FS and CPU) it exceeds bun's default 5000ms hook timeout,
beforeEach times out, engine stays undefined, then afterEach crashes
with `TypeError: undefined is not an object (evaluating 'engine.disconnect')`.
That single hook failure reports as the whole test "failing" even though
the test body never executed, which is why the failure count sometimes
looked inflated compared to the number of genuinely-broken tests.

Fix applied across 7 test files:

- Raise setup hook timeout to 30_000 (6x the default) — gives migration
  init enough headroom even under worst-case load without masking real
  regressions in a post-migration test.
- Raise teardown hook timeout to 15_000 — engine.disconnect() is usually
  fast but can stall when PGLite's WASM runtime is still completing a
  migration at shutdown.
- Add `if (engine) await engine.disconnect()` guard so afterEach doesn't
  double-fault when beforeEach already failed. This was the source of
  the opaque "(unnamed)" failures — they were disconnect crashes,
  not test-body failures.

Files:
  test/dream.test.ts                (5 beforeEach + 5 afterEach blocks)
  test/orphans.test.ts              (1 pair)
  test/brain-allowlist.test.ts      (1 pair)
  test/oauth.test.ts                (1 pair)
  test/extract-db.test.ts           (1 pair)
  test/multi-source-integration.test.ts (1 pair)
  test/core/cycle.test.ts           (1 pair)

Results on the merged PR 0 branch:
  Before: 2175 pass / 20 fail / 3 errors
  After:  2281 pass /  0 fail / 0 errors    (+106 tests running that
                                             were previously blocked
                                             by the timed-out hooks)

No changes to production code. No test assertions changed. Just
timeout-bump + null-guard discipline that should have been in these
hooks from the start. The real longer-term fix is reusing an engine
across tests where possible (brain-allowlist.test.ts already does this
via beforeAll+DELETE-pages pattern), but that's per-file structural
work — out of scope for this cleanup.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: regenerate llms-full.txt for brains-and-sources + brain-routing docs

The test/build-llms.test.ts test validates that the committed llms.txt
and llms-full.txt match the current generator output. PR 0 added
docs/architecture/brains-and-sources.md content paths and updated
CLAUDE.md + skills/RESOLVER.md in earlier commits, but the generated
bundle file wasn't regenerated alongside. This caused one of the 20
fails we chased down today — a straight content mismatch, not a runtime
bug. Running `bun run build:llms` picks up the new section content so
the bundle matches the sources again.

No functional change. Only the compiled doc bundle.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* Bump version 1.0.0.0 → 0.22.0

OAuth + admin dashboard is meaningful but doesn't quite warrant the
major-version reset to 1.0. Renumber as v0.22.0, slotting cleanly above
master's v0.21.0 (Cathedral II).

Touched:
- VERSION, package.json: 1.0.0.0 → 0.22.0
- CHANGELOG.md: heading + "BEFORE/AFTER v1.0" table + "To take advantage"
  + "pre-v1.0" all renamed. Narrative voice unchanged otherwise.
- TODOS.md: ChatGPT MCP completion stamp updated to v0.22.0 (2026-04-25).
- CLAUDE.md, README.md, docs/mcp/{DEPLOY,CHATGPT}.md, src/schema.sql,
  src/core/schema-embedded.ts: every reader-facing v1.0.0 reference
  rewritten to v0.22.0 / pre-v0.22 in the same place.
- llms-full.txt: regenerated to match.

Slug-test occurrences of "v1.0.0" (`test/slug-validation.test.ts`,
`test/file-upload-security.test.ts`) and the `HOMEBREW_FOR_PERSONAL_AI`
roadmap reference to a future v1.0 vision left intact — those are
unrelated to this branch's release version.

Typecheck clean. cli + oauth + slug + file-upload tests pass (106 tests).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.26.0 fix: 4 security findings from /cso pass + version bump

Bumped 0.22.0 → 0.26.0 to slot above master's v0.21 chain with headroom
for v0.23/0.24/0.25 to ship from master between now and merge.

Security fixes (all from CSO finding writeups):

#1 cookie-parser middleware — admin dashboard auth was silently broken.
   Express 5 has no built-in cookie parsing; req.cookies was always
   undefined, so /admin/login set the cookie but every subsequent admin
   API call returned 401. Added cookie-parser@^1.4.7 + @types/cookie-parser
   as direct + dev deps. app.use(cookieParser()) wired before CORS.

#2 + #3 TOCTOU races — exchangeAuthorizationCode and exchangeRefreshToken
   used SELECT-then-DELETE, letting concurrent requests with the same
   code/refresh both pass the SELECT before either ran DELETE, both
   issuing token pairs. Switched to atomic DELETE...RETURNING. RFC 6749
   §10.5 (codes) + §10.4 (refresh detection) violations closed. Added
   regression tests that fire 10 concurrent exchanges and assert exactly
   one wins — both pass.

#5 pgArray escape + DCR redirect_uri validation — pgArray() did
   `arr.join(',')` with no escaping, so an element containing a comma
   would be parsed by Postgres as TWO array elements. With --enable-dcr
   on, this could smuggle a second redirect_uri into a registered client
   and steal auth codes. Now every element is double-quoted with `"` and
   `\` escaped. Added validateRedirectUri() per RFC 6749 §3.1.2.1:
   redirect_uris must be https:// or loopback (localhost / 127.0.0.1).
   Wired into the DCR registerClient path; CLI registration trusts the
   operator and bypasses. Regression test confirms a comma-in-URI element
   round-trips as 1 element, not 2.

#6 --public-url flag — issuerUrl was hardcoded to http://localhost:{port}.
   Behind reverse proxies / ngrok / production deploys, the issuer claim
   in tokens wouldn't match the discovery URL clients hit (RFC 8414 §3.3).
   New --public-url URL flag on `gbrain serve --http`, propagates through
   serve.ts → serve-http.ts → ServeHttpOptions.publicUrl → issuerUrl.
   Startup banner surfaces the configured issuer.

Findings #4 (admin requests filter dead code), #7 (admin register-client
hardcoded grant_types), #8 (legacy token grandfathering posture) are
documentation / minor functional fixes and are deferred per user direction.

Tests: oauth.test.ts now 34 cases (was 27). 7 new:
- single-use TOCTOU regression (10 concurrent code exchanges)
- single-use TOCTOU regression (10 concurrent refresh exchanges)
- redirect_uri http://localhost passes
- redirect_uri https://example.com passes
- redirect_uri http://example.com (non-loopback plaintext) rejected
- redirect_uri non-URL rejected
- redirect_uri with embedded comma stored as single element

Files:
- VERSION, package.json: 0.22.0 → 0.26.0
- CHANGELOG.md: heading + table + "To take advantage" + "pre-v0.22" → v0.26;
  new "Security hardening (post-/cso pass)" subsection at top of itemized
  changes; CLI flag list updated for --public-url.
- src/core/oauth-provider.ts: pgArray escape, validateRedirectUri,
  registerClient enforces validation, DELETE...RETURNING in
  exchangeAuthorizationCode + exchangeRefreshToken.
- src/commands/serve-http.ts: cookie-parser import + wire-up,
  publicUrl option, issuerUrl honors it, startup banner shows issuer.
- src/commands/serve.ts: parses --public-url and threads through.
- src/cli.ts: help text adds --public-url URL flag.
- test/oauth.test.ts: +7 regression tests (now 34 total).
- llms-full.txt: regenerated.

Typecheck clean. 34 oauth + 14 cli tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-05-02 22:01:05 -07:00
ce15062694 feat: GBrain v0.7.0 — Integration Recipes + SKILLPACK Breakout (#39)
* docs: break SKILLPACK into 17 individual guides

The 1,281-line SKILLPACK monolith is now 17 individually linkable guides
in docs/guides/, organized by category: core patterns, data pipelines,
operations, search, and administration.

GBRAIN_SKILLPACK.md becomes a structured index with categorized tables
linking to each guide. The URL stays stable for backward compatibility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add integration guides, architecture docs, and ethos

New documentation directories:
- docs/integrations/ — "Getting Data In" landing page, credential gateway,
  meeting webhooks. Includes recipe format documentation.
- docs/architecture/ — Infrastructure layer doc (import, chunk, embed, search)
- docs/ethos/ — "Thin Harness, Fat Skills" essay with agent decision guide
- docs/designs/ — "Homebrew for Personal AI" 10-star vision document

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: add gbrain integrations command + voice-to-brain recipe

New CLI command: gbrain integrations (list/show/status/doctor/stats/test)
- Standalone command, no database connection needed
- Uses gray-matter directly for recipe parsing (not parseMarkdown)
- --json flag on every subcommand for agent-parseable output
- Bare command shows senses/reflexes dashboard
- Health heartbeat via ~/.gbrain/integrations/<id>/heartbeat.jsonl

First recipe: recipes/twilio-voice-brain.md
- Phone calls create brain pages via Twilio + OpenAI Realtime
- Opinionated defaults: caller screening, brain-first lookup, quiet hours
- Outbound call smoke test (GBrain calls the user to prove it works)
- Validate-as-you-go credential testing
- Twilio signature validation for webhook security

Migration file for v0.7.0 with agent-readable changelog.
13 unit tests covering parseRecipe, CLI routing, and recipe validation.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add Getting Data In to README, update CLAUDE.md and manifest

README: voice calls in intro bullet list, new "Getting Data In" section
with integration table (voice, email, X, calendar) and recipe philosophy.

CLAUDE.md: reference new files (integrations.ts, recipes/, docs/guides/,
docs/integrations/, docs/architecture/, docs/ethos/).

manifest.json: bump to v0.7.0, add recipes_dir field.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: v0.7.0 CHANGELOG, TODOS, VERSION bump

CHANGELOG: v0.7.0 entry covering integration recipes, voice-to-brain,
gbrain integrations command, SKILLPACK breakout, and new documentation.

TODOS: 3 new items from CEO/DX reviews (constrained health_check DSL,
community recipe submission, always-on deployment recipes).

VERSION + package.json: bump to 0.7.0.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: rewrite voice recipe with agent instructions and verified links

Major improvements to recipes/twilio-voice-brain.md:

- Agent preamble: explains WHY sequential execution matters (each step
  depends on the previous), defines 4 stop points where the agent MUST
  pause and verify, tells agent to never say "something went wrong"
  but instead explain the exact error and fix

- User actions are now specific: exact URLs for every credential
  (Twilio console, OpenAI API keys page, ngrok dashboard), what
  buttons to click, what fields to copy, common failure modes

- All URLs verified via web search against current 2026 documentation:
  Twilio SID/token at twilio.com/console, OpenAI keys at
  platform.openai.com/api-keys, ngrok token at
  dashboard.ngrok.com/get-started/your-authtoken

- Cost estimate corrected: OpenAI Realtime is $0.06/min input +
  $0.24/min output (was understated), total ~$20-22/mo for 100 min

- Validate-as-you-go: each credential tested immediately with exact
  curl commands, failure messages explain what went wrong and how to fix

- Smoke test flow: tells user exactly what to say, verifies ALL
  three outputs (messaging notification + brain page + search result)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add "Homebrew for Personal AI" essay (markdown is code)

New essay at docs/ethos/MARKDOWN_SKILLS_AS_RECIPES.md — the distribution
corollary to "Thin Harness, Fat Skills." Argues that markdown skill files
are simultaneously documentation, specification, package, and source code.
The agent is the package manager. The git repo is the app store.

Referenced from SKILLPACK index and CLAUDE.md.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: rewrite agent instructions as command language, promote skills

The OpenClaw/Hermes install block is now a drill sergeant, not a tour guide.
Every step is an imperative command with exact verification criteria and
explicit stop-on-failure behavior. No FYI, no suggestions, just rails.

Key changes:
- 11-step setup with STOP points after each step
- Exact user instructions for Supabase connection string (what to click,
  what NOT to give the agent, what the string looks like)
- "Verify: run X. You must see Y. If not: Z" after every step
- Skills table now links to both skill files AND guide docs
- Integration recipes table simplified (no "coming soon" placeholders)
- Docs section reorganized: for agents / for humans / reference

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: 4 codex findings + add email-to-brain recipe

Codex review found 4 issues, all fixed:

1. getStatus() returned "configured" if ANY secret was set (e.g. just
   OPENAI_API_KEY). Now requires ALL required secrets before marking
   configured. Prevents false "configured" status and spurious doctor runs.

2. Twilio health check hit unauthenticated endpoint (always 401). Now
   uses authenticated curl with SID:token, matching the setup validation.

3. README anchor docs/GBRAIN_SKILLPACK.md#the-dream-cycle broken after
   SKILLPACK rewrite. Updated to point to docs/guides/cron-schedule.md.

4. Compiled binary can't find recipes/ via import.meta.dir. Added
   GBRAIN_RECIPES_DIR env var override + global bun install path fallback.

Also adds recipes/email-to-brain.md: Gmail deterministic collector pattern
with ClawVisor credential gateway, validate-as-you-go, agent instructions.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: add email, X, calendar, and meeting sync recipes

Four new integration recipes extracted from production wintermute patterns:

- recipes/email-to-brain.md: Gmail via ClawVisor, deterministic collector
  pattern (code pulls emails with baked-in links, agent does judgment),
  noise filtering, signature detection, digest generation

- recipes/x-to-brain.md: X API v2, timeline + mentions + keyword search,
  deletion detection (diffs previous run, verifies 404), engagement
  velocity tracking, rate limit awareness

- recipes/calendar-to-brain.md: Google Calendar via ClawVisor, historical
  backfill (years of data), daily markdown files with attendees + locations,
  attendee enrichment for brain pages

- recipes/meeting-sync.md: Circleback API, transcript import with speaker
  labels, attendee detection + filtering, entity propagation to people/
  company pages, action item extraction, idempotent by source_id

All recipes follow the same format: agent preamble with sequential execution
rules, validate-as-you-go credentials, exact URLs for API key setup,
stop-on-failure verification, and heartbeat logging.

Updated README, SKILLPACK index, and integrations landing page with all 5 recipes.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add Google OAuth as alternative to ClawVisor in email + calendar recipes

Both recipes now offer two auth options:
- Option A: ClawVisor (recommended, handles OAuth + token refresh)
- Option B: Google OAuth2 directly (no extra service, you manage tokens)

Option B includes step-by-step instructions for Google Cloud Console:
exact URLs, which buttons to click, which scopes to add, how to enable
the API, and the OAuth flow for token exchange.

This removes ClawVisor as a hard dependency for getting started.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add implementation guides with pseudocode and test suggestions

Every recipe now includes an "Implementation Guide" section with:

- Production-tested pseudocode the agent can follow to build each collector
- Edge cases and failure modes discovered in real deployment
- Non-obvious implementation details (why the 48h staleness heuristic,
  why Gmail links need authuser, why SSE responses need double-parsing)
- Test suggestions: what the agent should verify after setup

email-to-brain: noise filtering algorithm, signature detection patterns,
  Gmail link generation (authuser is critical), sent-mail dedup

x-to-brain: deletion detection with 3 heuristics (7-day, 48h staleness,
  API verification), engagement velocity thresholds (50 min for 2x, 100
  absolute jump), atomic writes, stdout contract, rate limit handling

calendar-to-brain: smart chunking (monthly for sparse years, weekly for
  dense), attendee filtering (rooms, groups, distros), merge-with-existing
  (only replace ## Calendar section), date/time parsing edge cases

meeting-sync: SSE double-JSON parsing, idempotency double-check (grep +
  filename), auto-tagging from meeting names, git commit after sync

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: 6 new guides from production patterns (wintermute extraction)

New guides extracted and generalized from production deployment:

- repo-architecture.md: Two-repo pattern (agent behavior vs world knowledge).
  Strict boundary rules, decision tree, hard rule: never write knowledge
  to the agent repo.

- sub-agent-routing.md: Model routing table by task type. Signal detector
  pattern (spawn Sonnet on every message). Research pipeline pattern
  (Opus plans, DeepSeek executes, Opus synthesizes). Cost optimization.

- skill-development.md: 5-step cycle (concept, prototype, evaluate, codify,
  cron). MECE discipline (no overlapping skills). Quality bar checklist.
  "If you ask twice, it should already be a skill."

- idea-capture.md: Originality distribution rating (0-100 across 4
  populations). Depth test ("could someone unfamiliar understand WHY?").
  Deep cross-linking mandate. Notability filtering.

- quiet-hours.md: Hold notifications 11pm-8am local time. Held messages
  directory pattern. Timezone-aware delivery. Morning briefing pickup.

- diligence-ingestion.md: 9-step pipeline for data room materials. Detection
  patterns (PDF filenames, spreadsheet tabs, user language). Index.md
  template with bull/bear case. Company page enrichment.

All PII scrubbed. Patterns generalized for any user.
SKILLPACK index updated with 6 new entries. CLAUDE.md references added.
All 37 SKILLPACK links verified.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: upgrade all guides to operational playbooks with pseudocode

Every guide now follows the playbook structure:
- Goal: one sentence, what this achieves
- What the User Gets: without this / with this
- Implementation: pseudocode with actual gbrain commands
- Tricky Spots: production-tested gotchas
- How to Verify: test steps the agent runs after setup

Guides upgraded (15 files):
- brain-agent-loop: on_message() loop with read/write/sync pseudocode
- brain-first-lookup: 4-step lookup cascade with exact commands
- brain-vs-memory: routing algorithm for 3 knowledge layers
- compiled-truth: page structure + rewrite vs append rules
- content-media: 3 ingest patterns (YouTube, social, PDFs)
- cron-schedule: full schedule table + dream cycle pseudocode
- enrichment-pipeline: 7-step protocol with tier classification
- entity-detection: spawn pattern + detection prompt + notability filter
- executive-assistant: 3 workflow algorithms (triage, prep, post-inbox)
- meeting-ingestion: 6-step transcript-to-brain flow
- operational-disciplines: 5 executable discipline blocks
- originals-folder: detection + exact-phrasing capture + cross-linking
- search-modes: decision tree for keyword vs hybrid vs direct
- source-attribution: citation format + hierarchy + conflict resolution
- Plus Goal/What User Gets headers on 6 newer guides

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add WebRTC to voice recipe + ngrok Hobby setup guide

Voice recipe updates:
- Added WebRTC endpoint (POST /session, GET /call, POST /tool) for
  browser-based calling with RNNoise noise suppression
- WebRTC pseudocode with the 4 non-obvious gotchas from production
  (voice under audio.output.voice, no turn_detection, no session.update
  on connect, trigger greeting via data channel)
- Recommend ngrok Hobby ($8/mo) for fixed domain instead of free tier
- Fixed domain means URLs never change, Twilio never breaks

New guide: docs/mcp/NGROK_SETUP.md
- How to set up ngrok Hobby for both MCP and voice agent
- Fixed domain setup, watchdog pattern, AI client configuration
- Claude Desktop requires Settings > Integrations (not JSON config)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* feat: add dependency graph + ngrok-tunnel + credential-gateway recipes

Recipes now have real dependencies via the `requires` field:
- voice-to-brain requires ngrok-tunnel (needs public URL for Twilio)
- email-to-brain requires credential-gateway (needs Gmail access)
- calendar-to-brain requires credential-gateway (needs Calendar access)
- x-to-brain and meeting-sync are standalone (direct API keys)

Two new infrastructure recipes:
- ngrok-tunnel: fixed public URL for MCP + voice. Recommends Hobby
  ($8/mo) for a domain that never changes. Includes watchdog pattern.
- credential-gateway: secure Google service access via ClawVisor
  (recommended) or direct OAuth2. One setup, all Google recipes use it.

Moved ngrok from docs/mcp/ to recipes/ — it's shared infrastructure,
not MCP-specific.

README and integrations landing page show dependency chains.
When agent installs voice-to-brain, it sets up ngrok-tunnel first.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* fix: add infra category, fix dashboard alignment, show dependencies

DX audit found two bugs in gbrain integrations dashboard:

1. Column alignment broken — IDs > 18 chars ran into descriptions
   with no space. Fixed: pad to 22 chars.

2. ngrok-tunnel and credential-gateway showed as SENSES but they're
   infrastructure. Added 'infra' category. Dashboard now shows three
   sections: INFRASTRUCTURE (set up first), SENSES, REFLEXES.

3. Dependencies now shown inline: "AVAILABLE (needs credential-gateway)"

Also added 'requires' field to JSON output for agent consumption.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add frontier model requirement disclaimer to README

GBrain's markdown-is-code approach requires models capable of
interpreting intent and implementing from architecture descriptions.
Tested with Claude Opus 4.6 and GPT-5.4 Thinking. Smaller models
will struggle with the recipe format.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: add PGLite → Supabase upgrade path to README

Clarify the database progression: start with PGLite (Postgres as WASM,
zero infrastructure, pgvector built in, nothing to install). Graduate
to Supabase or self-hosted Postgres when you need connection pooling,
concurrency, and remote MCP access from Claude Desktop, Cowork,
ChatGPT, Perplexity Computer, or any MCP-compatible agent.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: revert PGLite mention (coming in next branch)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: make all 23 guides consistent (Goal/Impl/Tricky/Verify)

Every guide now has exactly these sections in this order:
- ## Goal (one sentence)
- ## What the User Gets (without this / with this)
- ## Implementation (pseudocode with gbrain commands)
- ## Tricky Spots (3-5 numbered gotchas)
- ## How to Verify (3-5 numbered test steps)

11 guides restructured from non-standard headings:
- deterministic-collectors, live-sync, upgrades-auto-update (full rewrites)
- entity-detection, diligence-ingestion, idea-capture, quiet-hours,
  repo-architecture, skill-development, sub-agent-routing (restructured)

23/23 guides now pass consistency audit.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: restructure README around the #1 blocker (getting data in)

The README was leading with Postgres and database architecture. Most
users are stuck at step zero: "I have an agent but it doesn't know
anything about my life."

New structure:
1. The Problem — your agent doesn't know your life
2. Getting Data In — integration recipes, front and center
3. The Compounding Thesis — why this matters
4. How this happened — credibility, origin story
5. When you need Postgres — scale, not starting point

Postgres is de-emphasized from a full section to two paragraphs:
"You don't need Postgres to start" and "When you need Postgres"
(1,000+ files, remote MCP access, multiple AI clients).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: move Install to top of README, remove duplicate section

Install now appears right after Getting Data In (line 38), not buried
at line 295. The user sees: Problem → Getting Data In → Install.

Removed the duplicate Install section (262 lines) that was lower in
the README. The agent instructions block, CLI quickstart, and all
content is now in the single Install section near the top.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: move agent install block to first thing in README

"Start here: paste this into your agent" is now the first section,
right after the one-line pitch. No scrolling, no context, no preamble.
User opens the README, sees the paste block, copies it into OpenClaw
or Hermes, and the agent takes over.

Flow: pitch → paste block → Getting Data In → Compounding Thesis → origin story

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* docs: compress install block from 11 steps to 5

The agent install block was 102 lines and 11 steps. Now it's 40 lines
and 5 steps. Same coverage, half the text.

Changes:
- Merged "prove keyword search" + "embed" + "prove hybrid search"
  into one SEARCH step (the user doesn't care about the intermediate)
- Merged skillpack, sync, auto-update, integrations, verification
  into one GO LIVE step with sub-items (post-install polish, not install)
- Shortened database instructions (one line instead of 5 sub-steps)
- Removed redundant preamble ("YOU MUST COMPLETE EVERY STEP" is now
  just "Do not skip steps. Verify each step.")

The 5 steps: INSTALL → DATABASE → IMPORT → SEARCH → GO LIVE

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* security: gitignore all .env files, not just specific ones

CSO audit found .gitignore covered .env.testing and .env.production
but not bare .env. A user creating .env with database credentials
could accidentally commit it.

Fix: .env and .env.* are now gitignored. .env.*.example files are
explicitly un-ignored so templates remain tracked.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* security: scrub PII from essay and recipe examples

- 510-MY-GARRY phone mnemonic → "Your Phone Number"
- "Garry → Authenticated Mode" → "Owner → Authenticated Mode"
- "Telegram" → "secure channel" in auth example
- @garrytan → @yourhandle in X recipe example

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-10 23:39:06 -10:00