Files
gbrain/test/orphans.test.ts
T
4446e9f9d2 v0.35.5.0 fix wave: bootstrap + orphans + think MCP + worktree + walker (#1111)
* fix(bootstrap): extend probes for files/oauth_clients/sources.archived* + add MIGRATIONS introspection guard

Adds 7 new forward-reference probes to applyForwardReferenceBootstrap on
both engines, closes the column-only forward-ref class via a new
MIGRATIONS-source introspection contract test.

New probes:
- files.source_id + files.page_id (v18 forward refs)
- oauth_clients.source_id + oauth_clients.federated_read (v60+v61+v65)
- sources.archived + archived_at + archive_expires_at (v34 promoted from JSONB)

The sources.archived* columns are the codex-flagged class: they're added
inline in v34's CREATE TABLE definition but `CREATE TABLE IF NOT EXISTS
sources` is a no-op on pre-v34 brains, so downstream visibility filters
(search/list_pages) trip on old brains. needsPagesBootstrap now folds
archive columns into its CREATE TABLE so pre-v0.18 brains get a v34-shape
sources in one go; needsSourcesArchive then only fires on the pre-v34
case (sources exists, archive cols don't).

Closes the structural bug class via test/helpers/extract-added-columns.ts:
reads src/core/migrate.ts as text and extracts every ALTER TABLE ADD
COLUMN. The new contract test asserts every (table, column) pair is
covered by EITHER the bootstrap's ALTER TABLE statements, the bootstrap's
CREATE TABLE definitions, OR the schema blob's CREATE TABLE bodies. The
column-only class (no index, no FK; just an inline CREATE TABLE column
the schema blob can't add to existing tables) is now caught at PR time.

Source-text introspection catches all three migration shapes uniformly:
- top-level `sql:` field
- `sqlFor.postgres` / `sqlFor.pglite` overrides
- handler-body `engine.runMigration(N, \`ALTER TABLE ...\`)` (v34 shape)

Pre-existing parseBaseTableColumns parser bug fixed: now strips `--` line
comments and `/* ... */` blocks before identifying column names. Without
this, a column preceded by a comment was silently dropped. Catches
pages.page_kind and others that were silently uncovered.

13 columns added by migrations but not in PGLITE_SCHEMA_SQL are exempted
with a unified rationale: they have no schema-blob forward reference;
migration handles all upgrade paths cleanly. Refreshing the schema blob
is a separate concern.

Issues closed: #1018 (v60 oauth_clients), #974 (files.source_id/page_id),
#820 (v0.13.0 migration files.page_id cascade); pre-empts the
sources.archived class before any pre-v34 brain trips on it.

Tests:
- 9 cases in test/schema-bootstrap-coverage.test.ts (5 existing + 4 new)
- helper-level unit tests cover SQL shape variants (IF NOT EXISTS,
  quoted identifiers, ALTER TABLE IF EXISTS ONLY, multi-statement)
- planted-bug regression verifies the gate actually catches new uncovered
  columns

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(orphans): filter soft-deleted pages on both candidate and link-source sides

Closes #1021. The v0.26.5 soft-delete invariant requires that
findOrphanPages exclude both:
  1. Candidate pages that are themselves soft-deleted
  2. Inbound links from soft-deleted source pages

Pre-fix, findOrphanPages had no deleted_at filter at all. Soft-deleted
pages with no inbound links were counted as orphans (inflating counts).
Pre-codex-tension-D11, only the candidate-side filter was planned.
Codex C11 caught the second case: a live page that has ONE inbound link
from a soft-deleted source page was hidden from orphan results — the
link still existed in the links table, the EXISTS subquery saw it, the
page looked "linked." Now the inner JOIN on pages enforces
src.deleted_at IS NULL.

Three regression tests pin the contract:
- soft-deleted page with no inbound → NOT orphan
- live page with ONLY inbound link from soft-deleted source → IS orphan
- live page with live inbound → NOT orphan (smoke check that the new
  filters don't break unchanged behavior)

Engine parity: same SQL shape on both Postgres and PGLite engines.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(think): route runThink through gateway.chat adapter (closes #952)

Pre-fix, runThink instantiated `new Anthropic()` directly and read
ANTHROPIC_API_KEY from process.env. Claude Desktop's stdio MCP launch
doesn't inherit shell env, so `gbrain config set anthropic_api_key sk-...`
(writes to ~/.gbrain/config.json) never reached the SDK and every MCP
think call degraded to "no LLM available."

The adapter routes through gateway.chat() — the canonical seam per
CLAUDE.md. Gateway reads the API key from gbrain config OR env, picks
up prompt caching, rate-leases, retry, and the test seam
(__setChatTransportForTests) that v0.31.12 established.

Per plan-eng-review D10 (cross-model tension with codex C7+C8+C9+C10),
four spec points landed:

  1. Drop `new Anthropic()` direct path entirely. Every non-stub LLM
     call from runThink routes through gateway.

  2. Real availability check (NOT a false-positive `getChatModel()`
     truthy). `tryBuildGatewayClient` probes both the recipe (resolveRecipe
     throws AIConfigError on unknown providers) AND the API key (reads
     process.env + loadConfig at the gbrain config layer for parity with
     gateway's own auth resolution). Returns null on miss; runThink takes
     the graceful "no LLM available" early-return preserving the legacy
     NO_ANTHROPIC_API_KEY warning signal.

  3. Model-id normalization. resolveModel returns bare anthropic ids
     (claude-opus-4-7); gateway.chat needs provider:model. Adapter
     auto-prefixes anthropic: when the id is bare. Provider:model strings
     pass through unchanged.

  4. Response-shape conversion. ChatResult → Anthropic.Message via
     chatResultToMessage. mapStopReason translates gateway's
     provider-neutral stop reasons (end / length / tool_calls / refusal /
     content_filter / other) to Anthropic's stop_reason ('end_turn' /
     'max_tokens' / 'tool_use'); refusal/content_filter/other fall through
     to end_turn (no Anthropic equivalent). Usage tokens pass through.

`opts.client` injection preserved (test seam — see ThinkLLMClient).
`opts.stubResponse` preserved (pure-test escape).

Tests:
  - test/think-gateway-adapter.test.ts (9 cases): response shape, stop
    reason mapping, model-id normalization (bare + prefixed), provider
    unknown returns null, ANTHROPIC_API_KEY absent returns null
    (regression for legacy graceful degradation), hasAnthropicKey reads
    process.env correctly. Uses withEnv per the test-isolation contract.
  - test/think-pipeline.serial.test.ts (17 existing cases): unchanged;
    the graceful-degradation case at line 213 still produces the
    NO_ANTHROPIC_API_KEY warning because tryBuildGatewayClient returns
    null when no key is configured, taking the legacy early-return path.

Closes #952.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(sync): distinguish git worktree from submodule via path-segment match (closes #889)

Pre-fix, `manageGitignore` treated every `.git`-as-file as a submodule
and skipped gitignore management. Both submodules AND worktrees use
`.git` as a file (not a directory), so the legacy
`statSync.isFile()` check couldn't discriminate. Worktrees got
misclassified as submodules and their .gitignore wasn't managed.

Per plan-eng-review D4 (chose path-segment match over absolute-vs-
relative path heuristic): the gitdir path contains:
  - `/modules/<name>` for submodules (skip — managed by parent repo)
  - `/worktrees/<name>` for worktrees (MANAGE — first-class repo)

Both are documented Git internal layouts, stable across all 4
{relative, absolute} × {modules, worktrees} combinations including the
absorbed-submodule edge case from `git submodule absorbgitdirs` (where
the submodule's gitdir flips to an absolute path).

Malformed `.git` file (no `gitdir:` prefix, IO error) → MANAGE, preserving
the pre-#889 catch{} fail-closed-toward-managing semantics.

Tests (5 new + 1 regression renamed):
  - REGRESSION: submodule relative gitdir/modules/ → skip (D49 contract)
  - absorbed submodule absolute gitdir/modules/ → skip (edge case)
  - CRITICAL: worktree absolute gitdir/worktrees/ → MANAGE (closes #889)
  - worktree relative gitdir/worktrees/ → MANAGE
  - malformed .git file → MANAGE (preserves catch behavior)
  - regular .git directory → MANAGE (existing smoke)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(walkers): pruneDir helper + descent-time exclusion + transcript predicate (closes #923, #202)

Per plan-eng-review D12 (cross-model tension with codex C12+C13), three
structural changes:

1. Extract `pruneDir(name)` helper in src/core/sync.ts. Returns false for
   directory names walkers must NEVER descend into: `node_modules` (latent
   bug — no leading dot), dot-prefix dirs (`.git`, `.obsidian`, `.raw`,
   `.cache`, etc.), `ops`, and `*.raw` sidecar dirs (gbrain convention —
   `people/pedro.raw/` holds raw source for pedro.md). Walkers consult it
   at descent time BEFORE recursion, saving the IO cost of walking entire
   vendor / hidden / sidecar subtrees only to filter them at file-emit time.

2. `isSyncable` itself gains the same exclusion set (via pruneDir on each
   path segment). Closes the latent bug where node_modules markdown files
   slipped through: `node_modules/some-pkg/README.md` returned true pre-fix
   because the legacy dot-prefix check only blocked `.node_modules` (with
   a leading dot), not the actual `node_modules`. CRITICAL regression test
   in test/sync.test.ts pins the contract per IRON RULE.

3. Two walkers rewritten to use pruneDir at descent + per-walker file
   predicate at emit:
   - `walkMarkdownFiles` (src/commands/extract.ts): pruneDir + isSyncable
     ({strategy:'markdown'}). Pre-fix this walker had ONLY an ad-hoc
     dot-prefix exclusion and didn't call isSyncable at all — descended
     into node_modules, emitted markdown files from there, ignored README/
     ops/.raw filters.
   - `listTextFiles` (src/core/cycle/transcript-discovery.ts): pruneDir +
     own .txt/.md predicate. DOES NOT use isSyncable({strategy:'markdown'})
     because transcripts accept .txt and don't share markdown sync's
     README/ops exclusions (codex C12). Also made RECURSIVE — pre-fix
     it walked only the top dir, so transcripts in `corpus/2026/` were
     invisible (codex C14 — descent-time pruning is the right shape but
     the test would have passed vacuously on a non-recursive walker).

Verified blast radius before adding node_modules: every existing
isSyncable caller (sync.ts:558-561 sync filter, frontmatter.ts:264 validate,
brain-writer.ts:305 reverse-write, import.ts:454 import filter) wants
node_modules excluded — this is a latent-bug fix, not a behavior change
for any legitimate caller.

Tests:
- 7 new isSyncable cases including the node_modules CRITICAL regression
- 6 new pruneDir cases (node_modules, dot-prefix, ops, *.raw, content
  dirs that should pass, empty-string default)
- Existing extract.test.ts + extract-fs.test.ts unchanged and passing

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(todos): file v0.36.x follow-ups for runThink rewrite + Supabase bootstrap parity

Two follow-up TODOs filed during the v0.36 dreamy-thompson wave:

1. runThink full rewrite (D5+D7 from plan-eng-review): drop the
   ThinkLLMClient indirection now that v0.36 routes through gateway.chat.
   12+ tests need migration to __setChatTransportForTests. Blocked by
   this wave landing.

2. Supabase parity test for applyForwardReferenceBootstrap (codex C6
   residual): real Docker Postgres E2E catches schema correctness but
   not Supabase pooler/direct-pool routing. The probe uses this.sql but
   PostgresEngine.initSchema chooses a DDL connection; the divergence
   has caused multiple historical wedges (#699, #820 lineage).

Both entries include full context per the CLAUDE.md TODOS-format spec
(what, why, pros, cons, blocked-by, plan reference).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(bootstrap): thread DDL connection through applyForwardReferenceBootstrap

Codex adversarial review during /ship caught a P1: initSchema selected a
DDL connection, took pg_advisory_lock(42) on it, but
applyForwardReferenceBootstrap used `this.sql` (the instance pool) inside.
Bootstrap probes ran outside the lock scope on a different connection.

Failure mode: two concurrent gbrain instances could BOTH enter the
bootstrap block on Supabase transaction-pooler setups because the
advisory lock was held on a different connection than the one running
ALTER TABLE. The pooler's statement_timeout could also kill the probes
mid-flight without affecting the lock-holder, leaving an inconsistent
schema state.

Fix: applyForwardReferenceBootstrap now accepts an optional connection
parameter. initSchema passes the DDL conn (the one holding the lock).
this.sql remains the fallback for any unit-test path that calls bootstrap
directly. PGLite engine doesn't need this change — single connection,
no pooler.

This was pre-existing (every prior probe used this.sql), but the v0.36
wave is explicitly about fixing the Supabase upgrade-wedge class. Codex's
position was correct: don't ship the wave with the underlying connection
mismatch still there. The Supabase parity TEST FIXTURE follow-up remains
on TODOS.md (test infra needed to PROVE the fix works under real pooler
topology), but the bug itself is closed.

15/15 bootstrap tests pass. Typecheck clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: bump version and changelog (v0.35.5.0)

Six-correctness-fix wave: bootstrap forward-ref class (4 issues + 1 pre-empt),
orphans soft-delete leak (both sides), runThink → gateway.chat adapter,
git worktree vs submodule discriminator, walker pruneDir + descent-time
exclusion, plus a Codex-P1 catch during /ship that threaded the DDL
connection through applyForwardReferenceBootstrap.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: update CLAUDE.md for v0.35.5.0 backend correctness wave

Fold v0.35.5.0 file-level annotations into CLAUDE.md:
- postgres-engine.ts + pglite-engine.ts: 7 new applyForwardReferenceBootstrap
  probes (files.source_id/page_id, oauth_clients.source_id/federated_read,
  sources.archived/archived_at/archive_expires_at) + DDL connection threading
- test/schema-bootstrap-coverage.test.ts: new MIGRATIONS-source introspection
  guard + parseBaseTableColumns comment-stripping fix
- src/core/sync.ts: new pruneDir helper + manageGitignore worktree
  discriminator
- src/core/think/index.ts (new entry): runThink gateway adapter for MCP
  stdio key resolution
- src/core/operations.ts (new entry): findOrphanPages soft-delete filter

Regenerate llms-full.txt via bun run build:llms.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-17 14:02:45 -07:00

373 lines
13 KiB
TypeScript

import { describe, test, expect, beforeEach, afterEach } from 'bun:test';
import {
shouldExclude,
deriveDomain,
formatOrphansText,
findOrphans,
queryOrphanPages,
type OrphanPage,
type OrphanResult,
} from '../src/commands/orphans.ts';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
// --- shouldExclude ---
describe('shouldExclude', () => {
test('excludes pseudo-page _atlas', () => {
expect(shouldExclude('_atlas')).toBe(true);
});
test('excludes pseudo-page _index', () => {
expect(shouldExclude('_index')).toBe(true);
});
test('excludes pseudo-page _stats', () => {
expect(shouldExclude('_stats')).toBe(true);
});
test('excludes pseudo-page _orphans', () => {
expect(shouldExclude('_orphans')).toBe(true);
});
test('excludes pseudo-page _scratch', () => {
expect(shouldExclude('_scratch')).toBe(true);
});
test('excludes pseudo-page claude', () => {
expect(shouldExclude('claude')).toBe(true);
});
test('excludes auto-generated _index suffix', () => {
expect(shouldExclude('companies/_index')).toBe(true);
expect(shouldExclude('people/_index')).toBe(true);
});
test('excludes auto-generated /log suffix', () => {
expect(shouldExclude('projects/acme/log')).toBe(true);
});
test('excludes raw source slugs', () => {
expect(shouldExclude('companies/acme/raw/crustdata')).toBe(true);
});
test('excludes deny-prefix: output/', () => {
expect(shouldExclude('output/2026-q1')).toBe(true);
});
test('excludes deny-prefix: dashboards/', () => {
expect(shouldExclude('dashboards/metrics')).toBe(true);
});
test('excludes deny-prefix: scripts/', () => {
expect(shouldExclude('scripts/ingest-runner')).toBe(true);
});
test('excludes deny-prefix: templates/', () => {
expect(shouldExclude('templates/meeting-note')).toBe(true);
});
test('excludes deny-prefix: openclaw/config/', () => {
expect(shouldExclude('openclaw/config/agent')).toBe(true);
});
test('excludes first-segment: scratch', () => {
expect(shouldExclude('scratch/idea-dump')).toBe(true);
});
test('excludes first-segment: thoughts', () => {
expect(shouldExclude('thoughts/2026-04-17')).toBe(true);
});
test('excludes first-segment: catalog', () => {
expect(shouldExclude('catalog/tools')).toBe(true);
});
test('excludes first-segment: entities', () => {
expect(shouldExclude('entities/product-hunt')).toBe(true);
});
test('does NOT exclude a normal content page', () => {
expect(shouldExclude('companies/acme')).toBe(false);
expect(shouldExclude('people/jane-doe')).toBe(false);
expect(shouldExclude('projects/gbrain')).toBe(false);
});
test('does NOT exclude a page ending with log-like text that is not /log', () => {
expect(shouldExclude('devlog')).toBe(false);
expect(shouldExclude('changelog')).toBe(false);
});
});
// --- deriveDomain ---
describe('deriveDomain', () => {
test('uses frontmatter domain when present', () => {
expect(deriveDomain('companies', 'companies/acme')).toBe('companies');
});
test('falls back to first slug segment', () => {
expect(deriveDomain(null, 'people/jane-doe')).toBe('people');
expect(deriveDomain(undefined, 'projects/gbrain')).toBe('projects');
});
test('returns root for single-segment slugs with no frontmatter', () => {
expect(deriveDomain(null, 'readme')).toBe('readme');
});
test('ignores empty-string frontmatter domain', () => {
expect(deriveDomain('', 'people/alice')).toBe('people');
});
test('ignores whitespace-only frontmatter domain', () => {
expect(deriveDomain(' ', 'people/alice')).toBe('people');
});
});
// --- formatOrphansText ---
describe('formatOrphansText', () => {
function makeResult(orphans: OrphanPage[], overrides?: Partial<OrphanResult>): OrphanResult {
return {
orphans,
total_orphans: orphans.length,
total_linkable: orphans.length + 50,
total_pages: orphans.length + 60,
excluded: 10,
...overrides,
};
}
test('shows summary line', () => {
const result = makeResult([]);
const out = formatOrphansText(result);
expect(out).toContain('0 orphans out of');
expect(out).toContain('total');
expect(out).toContain('excluded');
});
test('shows "No orphan pages found." when empty', () => {
const out = formatOrphansText(makeResult([]));
expect(out).toContain('No orphan pages found.');
});
test('groups orphans by domain', () => {
const orphans: OrphanPage[] = [
{ slug: 'companies/acme', title: 'Acme Corp', domain: 'companies' },
{ slug: 'people/alice', title: 'Alice', domain: 'people' },
{ slug: 'companies/beta', title: 'Beta Inc', domain: 'companies' },
];
const out = formatOrphansText(makeResult(orphans));
expect(out).toContain('[companies]');
expect(out).toContain('[people]');
// companies section should appear before people (alphabetical)
const companiesIdx = out.indexOf('[companies]');
const peopleIdx = out.indexOf('[people]');
expect(companiesIdx).toBeLessThan(peopleIdx);
});
test('sorts orphans alphabetically within each domain group', () => {
const orphans: OrphanPage[] = [
{ slug: 'companies/zeta', title: 'Zeta', domain: 'companies' },
{ slug: 'companies/alpha', title: 'Alpha', domain: 'companies' },
{ slug: 'companies/beta', title: 'Beta', domain: 'companies' },
];
const out = formatOrphansText(makeResult(orphans));
const alphaIdx = out.indexOf('companies/alpha');
const betaIdx = out.indexOf('companies/beta');
const zetaIdx = out.indexOf('companies/zeta');
expect(alphaIdx).toBeLessThan(betaIdx);
expect(betaIdx).toBeLessThan(zetaIdx);
});
test('includes slug and title in output', () => {
const orphans: OrphanPage[] = [
{ slug: 'companies/acme', title: 'Acme Corp', domain: 'companies' },
];
const out = formatOrphansText(makeResult(orphans));
expect(out).toContain('companies/acme');
expect(out).toContain('Acme Corp');
});
test('summary line shows correct numbers', () => {
const orphans: OrphanPage[] = [
{ slug: 'a/b', title: 'B', domain: 'a' },
{ slug: 'a/c', title: 'C', domain: 'a' },
];
const result: OrphanResult = {
orphans,
total_orphans: 2,
total_linkable: 100,
total_pages: 120,
excluded: 20,
};
const out = formatOrphansText(result);
expect(out).toContain('2 orphans out of 100 linkable pages (120 total; 20 excluded)');
});
});
// ────────────────────────────────────────────────────────────────
// findOrphans + queryOrphanPages with explicit engine (v0.17 change)
// ────────────────────────────────────────────────────────────────
describe('findOrphans (engine-injected)', () => {
let engine: PGLiteEngine;
beforeEach(async () => {
engine = new PGLiteEngine();
await engine.connect({});
await engine.initSchema();
}, 60_000); // OAuth v25 + full migration chain needs breathing room
afterEach(async () => {
if (engine) await engine.disconnect();
}, 60_000);
test('returns pages with no inbound links, excluding pseudo-pages', async () => {
// Build a tiny brain: alice links to bob. alice is an orphan (nothing
// points to her), bob is not (alice points to him). _atlas is a pseudo
// page that should be excluded by default.
await engine.putPage('people/alice', {
type: 'person',
title: 'Alice',
compiled_truth: 'Alice works with Bob.',
timeline: '',
});
await engine.putPage('people/bob', {
type: 'person',
title: 'Bob',
compiled_truth: 'Bob.',
timeline: '',
});
await engine.putPage('_atlas', {
type: 'concept',
title: 'Atlas',
compiled_truth: 'pseudo-page',
timeline: '',
});
// Create the link alice -> bob.
await engine.addLink('people/alice', 'people/bob', 'mentioned', 'references', 'markdown');
const result = await findOrphans(engine);
const slugs = result.orphans.map(o => o.slug).sort();
expect(slugs).toEqual(['people/alice']); // _atlas excluded by default; bob has a backlink
expect(result.total_orphans).toBe(1);
expect(result.total_pages).toBe(3);
expect(result.excluded).toBeGreaterThanOrEqual(1); // _atlas was filtered
});
test('includePseudo: true surfaces pseudo-pages too', async () => {
await engine.putPage('_atlas', {
type: 'concept',
title: 'Atlas',
compiled_truth: 'pseudo',
timeline: '',
});
const result = await findOrphans(engine, { includePseudo: true });
const slugs = result.orphans.map(o => o.slug).sort();
expect(slugs).toContain('_atlas');
});
test('queryOrphanPages delegates to the passed engine (no global db)', async () => {
await engine.putPage('topic/standalone', {
type: 'concept',
title: 'Standalone',
compiled_truth: 'no inbound links',
timeline: '',
});
const rows = await queryOrphanPages(engine);
const slugs = rows.map(r => r.slug);
expect(slugs).toContain('topic/standalone');
});
test('zero pages: empty result (no crash on empty brain)', async () => {
const result = await findOrphans(engine);
expect(result.orphans).toEqual([]);
expect(result.total_orphans).toBe(0);
expect(result.total_pages).toBe(0);
});
// ────────────────────────────────────────────────────────────────
// Soft-delete filtering on BOTH sides (v0.26.5 invariant; codex C11)
// ────────────────────────────────────────────────────────────────
test('REGRESSION: soft-deleted page with no inbound is NOT in orphan results', async () => {
// Candidate-filter regression. Pre-fix, findOrphanPages returned every
// page without inbound links — including soft-deleted ones. Now the
// outer query filters p.deleted_at IS NULL.
await engine.putPage('people/alice', {
type: 'person',
title: 'Alice',
compiled_truth: 'Alice has no inbound links and is soft-deleted.',
timeline: '',
});
// Soft-delete alice directly via the DB handle (no engine method exposed).
await (engine as any).db.query(
`UPDATE pages SET deleted_at = now() WHERE slug = 'people/alice'`
);
const rows = await queryOrphanPages(engine);
const slugs = rows.map(r => r.slug);
expect(slugs).not.toContain('people/alice');
});
test('REGRESSION: live page with ONLY inbound link from soft-deleted source IS orphan (codex C11)', async () => {
// Link-source-filter regression. Pre-fix, a live page that had ONE
// inbound link from a soft-deleted source was hidden from orphan
// results because the EXISTS check didn't filter the source side.
// Now the inner JOIN filters src.deleted_at IS NULL too.
await engine.putPage('people/alice', {
type: 'person',
title: 'Alice',
compiled_truth: 'Alice was soft-deleted but used to link to Bob.',
timeline: '',
});
await engine.putPage('people/bob', {
type: 'person',
title: 'Bob',
compiled_truth: 'Bob has no live inbound links.',
timeline: '',
});
await engine.addLink('people/alice', 'people/bob', 'mentioned', 'references', 'markdown');
// Soft-delete alice. Bob's ONLY inbound link is now from a deleted page.
await (engine as any).db.query(
`UPDATE pages SET deleted_at = now() WHERE slug = 'people/alice'`
);
const rows = await queryOrphanPages(engine);
const slugs = rows.map(r => r.slug).sort();
// alice is soft-deleted → not in results (candidate filter).
// bob has no LIVE inbound link → IS in results (link-source filter — codex C11).
expect(slugs).not.toContain('people/alice');
expect(slugs).toContain('people/bob');
});
test('live page with inbound link from LIVE source is NOT orphan (regression for unchanged behavior)', async () => {
// Sanity check: the soft-delete filter must NOT break the basic
// "live link counts" case.
await engine.putPage('people/alice', {
type: 'person',
title: 'Alice',
compiled_truth: 'Alice is live and links to Bob.',
timeline: '',
});
await engine.putPage('people/bob', {
type: 'person',
title: 'Bob',
compiled_truth: 'Bob has a live inbound from Alice.',
timeline: '',
});
await engine.addLink('people/alice', 'people/bob', 'mentioned', 'references', 'markdown');
const rows = await queryOrphanPages(engine);
const slugs = rows.map(r => r.slug);
// alice is orphan (no inbound), bob is NOT (alice links to him).
expect(slugs).toContain('people/alice');
expect(slugs).not.toContain('people/bob');
});
});