Files
gbrain/CONTRIBUTING.md
T
736e8de1ec v0.25.0 feat: BrainBench-Real session capture + public-exports contract test (#437)
* feat(v0.22.0): eval_candidates + eval_capture_failures schema (Lane 1A)

R1 substrate for BrainBench-Real, replayed onto master after Cathedral II
landed. Migration v30 (slotted after master's v25-v29 Cathedral II wave)
creates two tables:

  eval_candidates: per-call capture of MCP/CLI/subagent query+search
    traffic. Column set lets gbrain-evals replay with full fidelity —
    source_ids from v0.18 multi-source, vector_enabled/detail_resolved/
    expansion_applied so replay knows what hybridSearch actually did,
    remote + job_id + subagent_id so rows are traceable to their origin.
    query is CHECK-capped at 50KB; PII scrubber (Lane 1B) runs before insert.

  eval_capture_failures: cross-process audit trail. In-process counters
    don't work because `gbrain doctor` runs in a separate process from
    the MCP server. Persistent rows let doctor query capture health via
    COUNT(*) GROUP BY reason over the last 24h.

Both tables get RLS on Postgres gated on BYPASSRLS (matches v24/v29
posture). PGLite ignores RLS; sqlFor split carries only DDL.

5 new BrainEngine methods (breaking-interface addition, drives v0.22.0
minor bump): logEvalCandidate, listEvalCandidates,
deleteEvalCandidatesBefore, logEvalCaptureFailure, listEvalCaptureFailures.
listEvalCandidates uses ORDER BY created_at DESC, id DESC so
`gbrain eval export` is deterministic across same-millisecond inserts.

Also adds HybridSearchMeta type for the side-channel callback used by
Lane 1C's op-layer capture (no change to hybridSearch return shape —
that respects Cathedral II's existing SearchResult[] contract).

Tests: 14 PGLite round-trip cases + 8 v30 structural assertions.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.22.0): PII scrubber + op-layer capture module (Lane 1B)

Replayed onto master post-Cathedral II. Same semantics as the original
v0.21.0 work — only adjusted to import HybridSearchMeta from types.ts
(canonical home) instead of redeclaring it locally.

src/core/eval-capture-scrub.ts — pure-function regex scrubber with 6
pattern families: emails, phones (US + E.164), SSN (year-aware),
Luhn-verified credit cards, JWT-shaped tokens, bearer tokens. Zero
deps. Adversarial-input safe.

src/core/eval-capture.ts — op-layer hook helper:
  - buildEvalCandidateInput(ctx, {scrub_pii}) — pure row builder
  - classifyCaptureFailure(err) — Postgres SQLSTATE → reason tag
  - captureEvalCandidate(engine, ctx, opts) — best-effort, never throws
  - isEvalCaptureEnabled / isEvalScrubEnabled — file-plane config checks

GBrainConfig gains `eval?: {capture?, scrub_pii?}`. Both default ON.
File-plane only — `gbrain config set` writes the DB plane, doesn't
control capture.

Tests: 17 scrubber + 21 capture-module cases. Zero regressions.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.22.0): hybridSearch onMeta callback + op-layer capture (Lane 1C)

Replayed onto master. Adapted from the original v0.21.0 work to keep
Cathedral II's contract intact: hybridSearch's return stays
`Promise<SearchResult[]>` (unchanged), and meta surfaces via an optional
`onMeta?: (meta: HybridSearchMeta) => void` callback in HybridSearchOpts.

Cathedral II callers leave onMeta undefined and pay no cost. The
op-layer capture wrapper passes a closure that threads meta into the
captured row so gbrain-evals can distinguish:
  - "with OPENAI_API_KEY" vs "keyword-only fallback" (vector_enabled)
  - "expansion fired" vs "expansion requested + silently fell back" (expansion_applied)
  - what hybridSearch actually used after auto-detect (detail_resolved)

Op-layer capture wired into both `query` and `search` op handlers in
src/core/operations.ts. Single hook site catches MCP dispatch + CLI +
subagent tool-bridge from the same place. Fire-and-forget, never throws,
respects ctx.config.eval.capture off-switch.

Tests:
  - test/hybrid-meta.test.ts (8 cases) — onMeta accuracy across the 4
    return paths in hybridSearch + verification that omitting onMeta
    leaves Cathedral II callers unchanged.
  - test/mcp-eval-capture.test.ts (10 cases) — query/search ops capture
    correctly with MCP/CLI/subagent contexts, scrub on/off, capture=false
    off-switch, non-captured ops (list_pages, get_page), F1 failure
    isolation.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.22.0): gbrain eval export/prune + doctor eval_capture check (Lane 1D)

Replayed onto master. Same semantics as the original v0.21.0 work.

CLI:
  gbrain eval export [--since DUR] [--limit N] [--tool query|search]
    NDJSON to stdout, every row prefixed with "schema_version":1 per
    docs/eval-capture.md contract. EPIPE-safe streaming, stderr
    heartbeats, deterministic ordering (created_at DESC, id DESC).

  gbrain eval prune --older-than DUR [--dry-run]
    Explicit retention cleanup. Requires --older-than (never deletes
    without a window). Duration strings: 30d, 7d, 1h, 90m, 3600s.

Legacy bare `gbrain eval --qrels …` still works via sub-subcommand
fall-through.

gbrain doctor gains an eval_capture check between markdown_body_completeness
and queue_health: reads eval_capture_failures for the last 24h, groups by
reason, warns when non-zero. Pre-v30 brains get "Skipped (table
unavailable)" — non-fatal.

docs/eval-capture.md ships the stable NDJSON schema reference for
gbrain-evals consumers.

Tests: 9 export cases + 5 prune cases. Doctor check covered by
existing doctor tests on master.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.22.0): public-exports contract test + CI count guard (Lane 2 / R2)

Master locks 17 public subpath exports as gbrain's stable third-party
contract. Zero enforcement existed. This PR locks the surface in two
layers:

1. test/public-exports.test.ts — runtime contract test.
   Reads package.json "exports" at startup. For each subpath, imports
   via the package name ("gbrain/engine"), NOT the relative filesystem
   path — that's the difference between exercising the actual resolver
   and bypassing it. Every subpath gets a canary symbol pinned (e.g.
   gbrain/search/hybrid must export hybridSearch + rrfFusion) so a
   refactor that renames or removes one fails CI before downstream
   consumers (gbrain-evals) silently break.

2. scripts/check-exports-count.sh — CI structural guard.
   Wired into `bun test` after check-jsonb-pattern.sh +
   check-progress-to-stdout.sh + check-wasm-embedded.sh per master's
   precedent. EXPECTED_COUNT=17 baseline — shrinks fail loudly,
   growth also fails so the new canary must be pinned in the runtime
   test deliberately.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs+e2e(v0.22.0): VERSION/CHANGELOG/CLAUDE/README + Postgres E2E (Lane 3)

Bump VERSION + package.json to 0.22.0 (next free slot after master's
v0.21.0 Code Cathedral II minor).

CHANGELOG.md v0.22.0 entry follows the Garry voice template:
  - Bold 2-line headline
  - Lead paragraph contextualizing v0.20 + v0.21 + v0.22 progression
  - Numbers-that-matter table comparing v0.21.0 → v0.22.0
  - "What this means for you" sectioned by audience
  - "## To take advantage of v0.22.0" operator runbook
  - Itemized changes

CLAUDE.md updates:
  - Key files: 8 new module entries (eval-capture*, eval-export,
    eval-prune, docs/eval-capture.md, public-exports test).
    hybrid.ts entry rewritten to reflect the additive `onMeta` callback
    (return shape unchanged).
  - Key commands: new v0.22.0 section for `gbrain eval export`,
    `gbrain eval prune`, and the doctor `eval_capture` check, with the
    file-plane vs DB-plane config gotcha called out.

README.md: one-paragraph pointer after the BrainBench blurb so anyone
reading the landing page sees the new session-capture feature.

llms.txt + llms-full.txt regenerated to pick up the doc additions.

test/e2e/eval-capture.test.ts (Postgres-only E1 spec):
  - CHECK violation surfaces as Postgres SQLSTATE 23514 on oversize input
  - RLS is actually enabled on both eval_candidates + eval_capture_failures
  - 50 concurrent logEvalCandidate calls — no deadlock, all distinct IDs

Skips gracefully when DATABASE_URL is unset.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(todos): P0 — PGLite test-runner concurrency flake

Pre-existing on master, surfaces ~27 false failures when bun test runs all
174 files together. Each failing file passes in isolation. Tracked for a
dedicated investigation branch.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix(v0.22.0): adversarial review post-fixes (doctor RLS, onMeta safety)

Two surgical fixes from /ship adversarial review, plus 6 follow-ups TODO'd
into v0.22.1:

- doctor.ts: distinguish pre-v30 missing-table (42P01, ok skip) from
  RLS-denied SELECT (42501, warn) and other DB errors (warn). The check
  exists specifically to surface capture-failure misconfigs cross-process,
  so silently reporting "ok / skipped" on the most diagnostic class
  defeated the purpose.

- hybrid.ts: wrap onMeta invocation in try/catch via small emitMeta
  helper. The callback is part of the public gbrain/search/hybrid
  contract; a throwing user-supplied closure must never break the search
  hot path.

- TODOS.md: 6 P1 follow-ups (eval prune real COUNT, scrubber CC false
  positives, dead 'scrubber_exception' enum value, id-cursor for
  cross-window dedup, public-export canary pinning, EXPECTED_COUNT dedup).

- TODOS.md: P0 entry for the pre-existing PGLite test-runner concurrency
  flake (~27 false failures in full bun test on master).

- CHANGELOG.md: 2 bullets noting the doctor + onMeta hardening.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(version): bump v0.22.0 → v0.25.0 (queue-aware version pick)

Master is at v0.21.0. Open PRs claim v0.21.1 (#432) and v0.24.0 (#387).
v0.25 is the first uncontested slot, so this branch claims it. Pure
rename across VERSION, package.json, CHANGELOG header, and every "v0.22.0"
reference in CLAUDE.md / README.md / TODOS.md / docs/eval-capture.md /
src/ / test/ files. CHANGELOG date bumped to 2026-04-26.

llms.txt + llms-full.txt regenerated.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.25.0): gbrain eval replay + contributor doc + CONTRIBUTING link

Closes the gap between "session capture works" (this PR's core) and
"contributors actually use it before merging." Three artifacts:

- src/commands/eval-replay.ts (~340 LOC) — reads NDJSON from `gbrain eval
  export`, re-runs each captured query/search against the current brain,
  computes set-Jaccard@k, top-1 stability, and latency delta. Stable JSON
  shape (schema_version:1) for CI gating; human mode prints a regression
  table sorted worst-first. Pure Bun, zero new deps. Stub-engine tests
  cover Jaccard math, NDJSON parser (including v2 forward-compat
  rejection + line-numbered errors), --limit, --verbose, --json, and
  graceful per-row error handling. 16/16 passing.

- docs/eval-bench.md (~80 lines) — contributor guide. The 4-command loop
  (export → change → replay → diff), metric definitions with healthy
  ranges (Jaccard ≥0.85, top-1 ≥85%, latency Δ within ±50ms), trigger
  paths, CI integration snippet, hand-crafted NDJSON corpus path for
  fresh installs, and the off-switch. Pairs with the existing
  docs/eval-capture.md which is the consumer-facing wire format.

- CONTRIBUTING.md gains a "Running real-world eval benchmarks (touching
  retrieval code)" section with the trigger paths and a link to
  docs/eval-bench.md. Reviewers now have a one-line ask: "did you run
  replay?"

CLAUDE.md key files updated. CHANGELOG bullets added. llms.txt
regenerated.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.25.0): CONTRIBUTOR_MODE flag — capture off by default for users

Eval capture was on for everyone in the v0.25.0 draft. Privacy footgun:
end users had retrieval traffic accumulate in their brain DB without
asking, even with PII scrubbing. Flips to off by default + explicit
opt-in for contributors who actually use the replay loop.

Resolution order in isEvalCaptureEnabled():
  1. config.eval.capture === true            → on
  2. config.eval.capture === false           → off
  3. process.env.GBRAIN_CONTRIBUTOR_MODE === '1' → on
  4. otherwise                                → off

The env var is the contributor-facing toggle (one line in .zshrc, no
JSON edit). Explicit config wins both directions for users who want to
override per-brain.

PII scrubbing gate stays independent — default true regardless of
CONTRIBUTOR_MODE — so any brain that does capture still scrubs.

Tests rewritten: env var hygiene per-test (origMode preserved + restored
in finally). 9/9 pass; total v0.25.0 suite is 198/198.

Docs:
- README.md gains a Contributing-section pointer to the env var.
- CONTRIBUTING.md gains a "CONTRIBUTOR_MODE — turn on the dev loop"
  section with verification commands and resolution-order table.
- docs/eval-bench.md leads with the prerequisite (must set the env var
  for the rest of the doc to be useful).
- docs/eval-capture.md "Config" section split into Path A (env var) +
  Path B (config) with explicit resolution-order rules.
- CHANGELOG v0.25.0 entry corrected ("on by default" was wrong) plus a
  new top itemized bullet calling out the gate change.
- CLAUDE.md eval-capture entry annotated with the new gate logic.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: post-ship documentation pass for v0.25.0

Cross-references every doc against the final state of the branch
(CONTRIBUTOR_MODE flag, eval replay tool, off-by-default capture):

- README.md: top callout rewritten — was implying capture-on-by-default
  contradicting the gate landed in 7a80ce25. Now leads with
  "contributor opt-in" and links docs/eval-bench.md alongside
  docs/eval-capture.md.
- AGENTS.md: new "Eval retrieval changes" task entry with the
  CONTRIBUTOR_MODE+replay one-liner so non-Claude agents (Codex, Cursor,
  Aider) have the same path.
- CLAUDE.md: "Key commands added in v0.25.0" gains the replay command and
  a CONTRIBUTOR_MODE bullet covering the resolution order.
- CHANGELOG.md: headline rewritten to match the actual feature ("benchmark
  retrieval changes against real captured queries before merging" — was
  "every real query is captured"). Stale "v0.22 ships the substrate"
  → v0.25. Test count corrected 82 → 144 (added 16 replay + 9
  CONTRIBUTOR_MODE + 8 v31-shape tests since the original count). Two
  metric rows added to the numbers table: default-off posture, in-tree
  replay tooling. "To take advantage" block split into user vs
  contributor branches with shell-rc instructions.
- TODOS.md: v0.22.1 follow-up reference corrected to v0.25.1.

llms.txt + llms-full.txt regenerated. Typecheck clean. 198/198 v0.25.0
tests still green.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-01 09:02:43 -07:00

7.9 KiB

Contributing to GBrain

Setup

git clone https://github.com/garrytan/gbrain.git
cd gbrain
bun install
bun test

Requires Bun 1.0+.

Project structure

src/
  cli.ts                  CLI entry point
  commands/               CLI-only commands (init, upgrade, import, export, etc.)
  core/
    operations.ts         Contract-first operation definitions (the foundation)
    engine.ts             BrainEngine interface
    postgres-engine.ts    Postgres implementation
    db.ts                 Connection management + schema loader
    import-file.ts        Import pipeline (chunk + embed + tags)
    types.ts              TypeScript types
    markdown.ts           Frontmatter parsing
    config.ts             Config file management
    storage.ts            Pluggable storage interface
    storage/              Storage backends (S3, Supabase, local)
    supabase-admin.ts     Supabase admin API
    file-resolver.ts      MIME detection + content hashing
    migrate.ts            Migration helpers
    yaml-lite.ts          Lightweight YAML parser
    chunkers/             3-tier chunking (recursive, semantic, llm)
    search/               Hybrid search (vector, keyword, hybrid, expansion, dedup)
    embedding.ts          OpenAI embedding service
  mcp/
    server.ts             MCP stdio server (generated from operations)
  schema.sql              Postgres DDL
skills/                   Fat markdown skills for AI agents
test/                     Unit tests (bun test, no DB required)
test/e2e/                 E2E tests (requires DATABASE_URL, real Postgres+pgvector)
  fixtures/               Miniature realistic brain corpus (16 files)
  helpers.ts              DB lifecycle, fixture import, timing
  mechanical.test.ts      All operations against real DB
  mcp.test.ts             MCP tool generation verification
  skills.test.ts          Tier 2 skill tests (requires OpenClaw + API keys)
docs/                     Architecture docs

Running tests

# Recommended: full CI guard chain + tests (matches what CI runs)
bun run test                      # privacy + jsonb + progress + wasm + typecheck + bun test

# Just the test runner (skips CI guards)
bun test                          # all tests (unit + E2E skipped without DB)
bun test test/markdown.test.ts    # specific unit test

# E2E tests (requires Postgres with pgvector)
docker compose -f docker-compose.test.yml up -d
DATABASE_URL=postgresql://postgres:postgres@localhost:5434/gbrain_test bun run test:e2e

# Or use your own Postgres / Supabase
DATABASE_URL=postgresql://... bun run test:e2e

Use bun run test before pushing. The guard chain catches: banned fork-name leaks (scripts/check-privacy.sh), JSON.stringify(x)::jsonb interpolation patterns (scripts/check-jsonb-pattern.sh), \r progress bleed to stdout (scripts/check-progress-to-stdout.sh), trailing-newline drift across tracked files (scripts/check-trailing-newline.sh), and silent fallback to recursive chunking in the compiled binary (scripts/check-wasm-embedded.sh).

bun run ci:local         # full gate: gitleaks + unit + ALL 29 E2E files (sequential)
bun run ci:local:diff    # gate with diff-aware E2E selector
bun run ci:select-e2e    # print which E2E files the selector would run

ci:local spins up pgvector/pgvector:pg16 + oven/bun:1 via docker-compose.ci.yml, runs everything PR CI runs plus the full E2E suite, then tears down. Named volumes keep the install warm across runs (~16-20 min sequential E2E after the first cold pull). Requires Docker (Docker Desktop, OrbStack, or Colima) and gitleaks on host (brew install gitleaks). Override the postgres host port with GBRAIN_CI_PG_PORT=5435 bun run ci:local if 5434 collides.

Fail-closed selector: an unmapped src/ change runs all 29 E2E files. Hand-tune narrower mappings via scripts/e2e-test-map.ts.

Building

bun build --compile --outfile bin/gbrain src/cli.ts

Adding a new operation

GBrain uses a contract-first architecture. Add your operation to one file and it automatically appears in the CLI, MCP server, and tools-json:

  1. Add your operation to src/core/operations.ts (define params, handler, cliHints)
  2. Add tests
  3. That's it. The CLI, MCP server, and tools-json are generated from operations.

For CLI-only commands (init, upgrade, import, export, files, embed, doctor, sync):

  1. Create src/commands/mycommand.ts
  2. Add the case to src/cli.ts

Parity tests (test/parity.test.ts) verify CLI/MCP/tools-json stay in sync.

Adding a new engine

See docs/ENGINES.md for the full guide. In short:

  1. Create src/core/myengine-engine.ts implementing BrainEngine
  2. Add to engine factory in src/core/engine.ts
  3. Run the test suite against your engine
  4. Document in docs/

The SQLite engine is designed and ready for implementation. See docs/SQLITE_ENGINE.md.

CONTRIBUTOR_MODE — turn on the dev loop

gbrain captures retrieval traffic so you can replay real queries against your code changes before merging. This is off by default (production users get a quiet brain, no surprise data accumulation). Contributors turn it on with one shell rc line:

# In ~/.zshrc or ~/.bashrc:
export GBRAIN_CONTRIBUTOR_MODE=1

That's it. Every query / search you (or agents pointed at your dev brain) run from that shell now writes a row to eval_candidates, and the replay tool has data to work against.

What CONTRIBUTOR_MODE actually does:

  • Turns on query/search capture into the local eval_candidates table. Without it the gate is closed and capture is a no-op.
  • That's all. PII scrubbing, retention, and replay are independent.

Resolution order (most explicit wins):

  1. eval.capture: true in ~/.gbrain/config.json → on
  2. eval.capture: false in ~/.gbrain/config.json → off
  3. GBRAIN_CONTRIBUTOR_MODE=1 → on
  4. otherwise → off

Quick check that capture is actually running:

gbrain query "anything" >/dev/null
psql $DATABASE_URL -c 'SELECT count(*) FROM eval_candidates'
# (or `gbrain doctor` — surfaces silent capture failures cross-process)

To disable capture even with the env var set, write {"eval": {"capture": false}} to ~/.gbrain/config.json — explicit config beats the env var both directions.

Running real-world eval benchmarks (touching retrieval code)

If your PR touches retrieval — search ranking, RRF fusion, embeddings, intent classification, query expansion, source boost, or the query / search op handlers — run gbrain eval replay against a snapshot of real traffic before merging. Requires CONTRIBUTOR_MODE (above) so you have captured rows to replay against.

Quick loop:

gbrain eval export --since 7d > baseline.ndjson    # snapshot before your change
# ... make your change ...
gbrain eval replay --against baseline.ndjson       # diff retrieval, get Jaccard@k

Three numbers come back: mean Jaccard@k between captured and current slug sets, top-1 stability, and mean latency Δ. The replay tool flags the worst regressions so you can eyeball whether the change is hurting real queries.

Trigger paths (rerun if your diff touches any of these):

  • src/core/search/hybrid.ts
  • src/core/search/source-boost.ts, sql-ranking.ts
  • src/core/search/intent.ts, expansion.ts, dedup.ts
  • src/core/embedding.ts
  • src/core/operations.ts (query / search handlers)
  • src/core/postgres-engine.ts / pglite-engine.ts (searchKeyword / searchVector SQL)

See docs/eval-bench.md for the full guide including CI integration, hand-crafted NDJSON corpora (so a fresh checkout without captured data can still replay), and cost considerations. The NDJSON wire format is documented in docs/eval-capture.md.

Welcome PRs

  • SQLite engine implementation
  • Docker Compose for self-hosted Postgres
  • Additional migration sources
  • New enrichment API integrations
  • Performance optimizations