gbrain/INSTALL_FOR_AGENTS.md

GBrain Installation Guide for AI Agents

Read this entire file, then follow the steps. Ask the user for API keys when needed. Target: ~30 minutes to a fully working brain.

Step 0: If you are not Claude Code

Read AGENTS.md at the repo root first. It's the non-Claude-agent operating protocol (install, read order, trust boundary, common tasks). Claude Code reads CLAUDE.md automatically and can skip ahead.

If you fetched this file by URL without cloning yet, the companion files live at:

• https://raw.githubusercontent.com/garrytan/gbrain/master/AGENTS.md — start here
• https://raw.githubusercontent.com/garrytan/gbrain/master/llms.txt — full doc map
• https://raw.githubusercontent.com/garrytan/gbrain/master/llms-full.txt — same map, inlined

Step 1: Install GBrain

Default path (Bun is required — gbrain is a Bun + TypeScript runtime):

curl -fsSL https://bun.sh/install | bash
export PATH="$HOME/.bun/bin:$PATH"
bun install -g github:garrytan/gbrain

Verify: gbrain --version should print a version number. If gbrain is not found, restart the shell or add the PATH export to the shell profile.

If bun install -g aborts or gbrain doctor reports schema_version: 0 (Bun occasionally blocks the top-level postinstall hook on global installs, so schema migrations don't run automatically), the CLI prints a recovery hint pointing at #218. Run gbrain apply-migrations --yes to recover. If that doesn't work, fall back to the deterministic install path:

git clone https://github.com/garrytan/gbrain.git ~/gbrain && cd ~/gbrain
bun install && bun link

Step 2: API Keys

Ask the user for these. gbrain defaults to the ZeroEntropy embedding + reranker stack (as of v0.36.2.0); OpenAI/Voyage are still supported as fallbacks via gbrain config set embedding_model <provider:model>.

export ZEROENTROPY_API_KEY=ze-...     # default embedding + reranker (v0.36.2.0+)
export OPENAI_API_KEY=sk-...          # fallback for vector search; also used for chat models
export ANTHROPIC_API_KEY=sk-ant-...   # optional, improves search quality via query expansion

Save to shell profile or .env. Keys are picked up by gbrain config set automatically or can be stored in ~/.gbrain/config.json (file plane). Without any embedding provider, keyword search still works. Without Anthropic, search works but skips query expansion.

Step 3: Create the Brain

gbrain init                           # PGLite, no server needed
gbrain doctor --json                  # verify all checks pass

The user's markdown files (notes, docs, brain repo) are SEPARATE from this tool repo. Ask the user where their files are, or create a new brain repo:

mkdir -p ~/brain && cd ~/brain && git init

Read ~/gbrain/docs/GBRAIN_RECOMMENDED_SCHEMA.md and set up the MECE directory structure (people/, companies/, concepts/, etc.) inside the user's brain repo, NOT inside ~/gbrain.

Step 3.5: Confirm search mode with the user (DO NOT SKIP)

gbrain init auto-applied a default search mode (tokenmax unless your subagent tier is Haiku-class or no OpenAI key is configured). The init output included the cost matrix below preceded by [AGENT] markers. You must NOT silently accept the default. Stop and ask the operator.

Present this matrix verbatim:

Per-query cost @ 10K queries/mo (typical single-user volume):

                  Haiku 4.5     Sonnet 4.6    Opus 4.7
                  ($1/M)        ($3/M)        ($5/M)
  conservative    $40/mo        $120/mo       $200/mo
  balanced        $100/mo       $300/mo       $500/mo
  tokenmax        $200/mo       $600/mo       $1,000/mo

(scales linearly: ×10 for 100K/mo, ÷10 for 1K. 25x corner-to-corner spread.
 Natural diagonal pairings — cheap/cheap → frontier/frontier — span ~4x.)

Ask the operator (paraphrase if needed):

Your gbrain just installed with search mode <auto-applied default>. This is a one-time setup decision that controls retrieval payload size. Which mode do you want?

1. conservative — tight 4K budget, no LLM expansion, 10 chunks max. Best for Haiku subagents, cost-sensitive setups, high-volume loops.

2. balanced — 12K budget, no expansion, 25 chunks. Sonnet-tier sweet spot.

3. tokenmax (recommended default — preserves v0.31.x retrieval shape) — no budget, LLM expansion ON, 50 chunks. Best for Opus/frontier models.

Cost depends on BOTH the mode AND the downstream model you run. See the matrix above for the 9-cell breakdown.

If the operator picks a non-default mode, run:

gbrain config set search.mode <mode>

If they pick tokenmax AND want to preserve the literal v0.31.x default (limit=20 instead of tokenmax's 50), also run:

gbrain config set search.searchLimit 20

Verify the choice with gbrain search modes before continuing.

Why this matters: the cost spread between corners of the matrix is 25x. An agent that silently accepts the default and starts running queries against a user who didn't expect tokenmax-class context loads can rack up surprise spend. Confirm before continuing.

Step 4: Import and Index

gbrain import ~/brain/ --no-embed     # import markdown files
gbrain embed --stale                  # generate vector embeddings
gbrain query "key themes across these documents?"

Step 4.5: Wire the Knowledge Graph

If the user already had a brain repo (Step 3 imported existing markdown), backfill the typed-link graph and structured timeline. This populates the links and timeline_entries tables that future writes will maintain automatically.

gbrain extract links --source db --dry-run | head -20    # preview
gbrain extract links --source db                         # commit
gbrain extract timeline --source db                      # dated events
gbrain stats                                             # verify links > 0

For brand-new empty brains, skip this step — auto-link populates the graph as the agent writes pages going forward. There is nothing to backfill yet.

After this step:

• gbrain graph-query <slug> --depth 2 works (relationship traversal)
• Search ranks well-connected entities higher (backlink boost)
• Every future put_page auto-creates typed links and reconciles stale ones

If a user has a very large brain (>10K pages), extract --source db is idempotent and supports --since YYYY-MM-DD for incremental runs.

Obsidian-style bare wikilinks (opt-in)

If the user imported an Obsidian or Notion vault that uses bare [[note-name]] wikilinks — where [[struktura]] written in one folder means the page that lives at projects/struktura.md in another — GBrain does NOT connect those by default. Out of the box it only resolves path-qualified refs like [[projects/struktura]], so a vault full of bare links shows up as a thin, broken graph. Turn on basename resolution so the cross-folder links connect:

gbrain config set link_resolution.global_basename true
gbrain extract links --source db          # re-run so the new edges land

gbrain doctor surfaces a link_resolution_opportunity hint with the exact count ("47 of 60 bare wikilinks would resolve") so you know whether it's worth enabling before you flip it. When a bare name matches more than one page ([[struktura]] → both projects/struktura and archive/struktura), GBrain emits one edge to each rather than guessing a winner — review and prune the duplicates with gbrain graph-query <slug>. The mode is also honored on the filesystem-walk path (gbrain extract links with no --source db) and by auto-link on every future put_page.

Step 5: Load Skills

If you're running an agent platform (OpenClaw, Hermes, or any repo with a workspace), scaffold the bundled skills into it:

cd /path/to/agent/workspace
gbrain skillpack scaffold --all       # copy 43 curated skills + RESOLVER.md

Scaffolded skills are first-class files in your repo. Edit freely; re-running scaffold refuses to overwrite anything that exists. Use gbrain skillpack reference <name> to diff against gbrain's bundle when you want upstream improvements. (The legacy gbrain skillpack install managed-block model was retired in v0.36.0.0 — run gbrain skillpack migrate-fence once if upgrading from an older release.)

Whether you scaffolded or not, read skills/RESOLVER.md (in your workspace, or the bundled copy at ~/gbrain/skills/RESOLVER.md when running from the cloned repo). It's the skill dispatcher — tells you which skill to read for any task. Save this to your memory permanently.

The three most important skills to adopt immediately:

1. Signal detector (skills/signal-detector/SKILL.md) — fire this on EVERY inbound message. It captures ideas and entities in parallel. The brain compounds.

2. Brain-ops (skills/brain-ops/SKILL.md) — brain-first lookup on every response. Check the brain before any external API call.

3. Conventions (skills/conventions/quality.md) — citation format, back-linking iron law, source attribution. These are non-negotiable quality rules.

Step 6: Identity (optional)

Run the soul-audit skill to customize the agent's identity:

Read skills/soul-audit/SKILL.md and follow it.

This generates SOUL.md (agent identity), USER.md (user profile), ACCESS_POLICY.md (who sees what), and HEARTBEAT.md (operational cadence) from the user's answers.

If skipped, minimal defaults are installed automatically.

Step 7: Recurring Jobs

Set up using your platform's scheduler (OpenClaw cron, Railway cron, crontab), or skip the platform glue entirely with gbrain autopilot --install (built-in self-maintaining daemon):

• Live sync (every 15 min): gbrain sync --repo ~/brain && gbrain embed --stale — or gbrain sync --watch for a continuous loop.
• Auto-update (daily): gbrain check-update --json (tell user, never auto-install).
• Dream cycle (nightly): gbrain dream runs the 8-phase overnight maintenance cycle. Entity sweep, citation fixes, memory consolidation, plus (v0.23+) overnight conversation synthesis and cross-session pattern detection. One cron-friendly command. This is what makes the brain compound. Do not skip it. See docs/guides/cron-schedule.md for the full protocol.
• Weekly: gbrain doctor --json && gbrain embed --stale

Step 8: Integrations

Run gbrain integrations list. Each recipe in ~/gbrain/recipes/ is a self-contained installer. It tells you what credentials to ask for, how to validate, and what cron to register. Ask the user which integrations they want (email, calendar, voice, Twitter).

Verify: gbrain integrations doctor (after at least one is configured)

Step 9: Verify

Read docs/GBRAIN_VERIFY.md and run all 7 verification checks. Check #4 (live sync actually works) is the most important.

Upgrade

If you installed via bun install -g:

gbrain upgrade                        # self-updates the binary, runs schema migrations,
                                      # and prints post-upgrade notes for the version range

If you installed via git clone + bun link:

cd ~/gbrain && git pull origin master && bun install
gbrain apply-migrations --yes         # apply schema migrations (idempotent)
gbrain post-upgrade                   # show migration notes for the version range

Then read ~/gbrain/skills/migrations/v<NEW_VERSION>.md (and any intermediate versions you skipped) and run any backfill or verification steps it lists. Skipping this is how features ship in the binary but stay dormant in the user's brain.

v0.32.3 search modes (one-time upgrade prompt): if the user's brain was created before v0.32.3, gbrain post-upgrade prints a banner including the 9-cell cost matrix (mode × downstream model) preceded by [AGENT] markers. Do NOT silently move past the banner. Present the matrix to the operator verbatim, ask which mode they want (recommended default: tokenmax to preserve v0.31.x retrieval shape), then run gbrain config set search.mode <mode>. See Step 3.5 above for the full ask-the-user protocol — the upgrade path uses the same matrix and same default.

For v0.12.0+ specifically: if your brain was created before v0.12.0, run gbrain extract links --source db && gbrain extract timeline --source db to backfill the new graph layer (see Step 4.5 above).

For v0.12.2+ specifically: if your brain is Postgres- or Supabase-backed and predates v0.12.2, the v0_12_2 migration runs gbrain repair-jsonb automatically during gbrain post-upgrade to fix the double-encoded JSONB columns. PGLite brains no-op. If wiki-style imports were truncated by the old splitBody bug, run gbrain sync --full after upgrading to rebuild compiled_truth from source markdown.

v0.42.0+ onboard surface (NEW)

gbrain onboard is the activation surface gbrain did not have before. Once your brain has any content, run gbrain onboard --check --json to see structured recommendations across 5 brain-health axes (orphans, stale embeddings, entity link coverage, timeline coverage, takes count).

On first connect (after gbrain init):

gbrain onboard --check --json

The JSON envelope (schema_version: 1) carries recommendations[] with apply_policy per item: auto_apply (safe to run unattended), prompt_required (needs explicit user consent), or manual_only (LLM-bearing, user must run themselves).

After every gbrain upgrade:

gbrain onboard --check --json

New versions may surface new opportunities. The post-upgrade banner nudges the user when it runs, but agents should re-probe as a hygiene step regardless.

Unattended remediation (cron / autopilot):

gbrain onboard --auto --max-usd 5

Refuses without --max-usd N. Runs auto-eligible items only. The autopilot daemon also consults onboard recommendations on its tick — no explicit agent action needed for the autonomous path.

Remote / federated brain installs (MCP): The run_onboard MCP op (admin scope) lets thin-client agents probe brain health + drive remediation over OAuth-authenticated MCP. Protected LLM-bearing handlers (synthesize, patterns, consolidate, takes-bootstrap, contextual_reindex_per_chunk) require the additional run_protected_onboard scope — admin alone is insufficient. The MCP op returns skipped_missing_scope[] listing what would have run with the right grants.

Privacy + consent gates:

• gbrain takes extract --from-pages sends concept/atom/lore/briefing/ writing/originals page content to your configured chat model (default Anthropic Haiku). Refuses to run unless takes.bootstrap_enabled=true is set in config AND --yes is passed. Two-gate opt-in by design.
• Autopilot's auto-apply tier for takes-bootstrap stays manual_only until v0.42.1's eval gate (do not bypass).

Suppress nudges in CI / scripted environments:

export GBRAIN_NO_ONBOARD_NUDGE=1

Init + upgrade banners auto-skip in non-TTY too.