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* fix(frontmatter): prune vendor dirs at descent + bounded wall-clock with partial-state surfacing Two production-grade fixes for the v0.38.2.0 wave (supersedes PR #1287). Root cause Fix 1 (the bug that hung gbrain doctor on 216K-page brains): both brain-writer.ts:walkDir and frontmatter.ts:collectFiles recursed into every subdirectory without calling pruneDir, the canonical descent-time pruner used by sync/extract/transcript-discovery since v0.35.5.0. On brains that double as code workspaces, the walkers stat'd hundreds of thousands of entries under node_modules / .git / .obsidian / *.raw / ops that isSyncable filtered out at the leaf — paying the IO cost for nothing. Wiring pruneDir at descent (with the v0.37.7.0 #1169 submodule-gitfile check) eliminates the bulk of the wall-clock pain. Fix 2 (codex outside-voice C1): AbortSignal.timeout cannot interrupt the synchronous walker — readdirSync / lstatSync / readFileSync block the event loop, so timer callbacks never fire mid-walk. The load-bearing wall-clock bound is now a deadline check inside scanOneSource's visit callback (Date.now() > opts.deadline). AbortSignal still works at source boundaries. Shape changes (codex C2 + C4): - ScanOpts: + deadline?: number, + dbPageCountForSource hook, + visitDir test seam - PerSourceReport: + status: 'scanned' | 'partial' | 'skipped', + files_scanned, + db_page_count - AuditReport: + partial: boolean, + aborted_at_source: string | null - ok = grandTotal === 0 && !partial (a clean prefix from a timed-out scan no longer falsely reports clean) walkDir + collectFiles now exported with an optional visitDir callback for the regression suite. Production callers don't pass it. Tests: - test/brain-writer-walk-prune.test.ts (new, 12 cases): visitDir-based descent-time pruning assertions for both walkers. Pins the property output-based tests can't catch (isSyncable rejects vendor files at the leaf — so a test checking only output passes under the original bug). - test/brain-writer-partial-scan.test.ts (new, 5 cases): deadline + partial state + ok-after-abort + numerator/denominator coverage. Uses deadline, NOT AbortSignal, since codex C1 proved abort can't interrupt sync. - test/brain-writer.test.ts: existing "abort mid-scan" test refit to the new partial-state contract (per_source has 'skipped' entries instead of being empty — gives doctor visibility into which sources weren't checked). - test/migrations-v0_22_4.test.ts: AuditReport fixture extended with the new required fields. Plan + cross-model review: ~/.claude/plans/system-instruction-you-are-working-hidden-lollipop.md Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * fix(doctor): wire deadline + partial-state into frontmatter_integrity check Adopts the v0.38.2.0 ScanBrainSources surface in doctor's frontmatter_integrity check. - AbortSignal.timeout(fmTimeoutMs) for between-source bound. - deadline = Date.now() + fmTimeoutMs (the load-bearing mid-walk bound — codex C1 caught that AbortSignal alone can't fire inside the sync walker). - GBRAIN_DOCTOR_FM_TIMEOUT_MS env override (default 30000ms; invalid values fall back to default rather than crash). - Per-source DB denominator via SELECT COUNT(*) FROM pages WHERE source_id = $1 AND deleted_at IS NULL (codex C3: deleted_at filter so soft-deleted pages don't inflate the count). - Honest partial-render: "PARTIAL — scanned ~N files (source has ~M pages in DB), K issue(s) so far" instead of "scanned ~N of M pages" (codex C3 — the two populations are overlapping but not identical sets). - "NOT SCANNED (timeout — run gbrain frontmatter validate <id>)" per skipped source so the user knows which sources didn't get checked. - Catch block simplified to "unexpected error only" (codex D4 — the AbortError special case from PR #1287 was unreachable in a sync walker). Tests: test/doctor-frontmatter-partial.test.ts (new, 11 cases) — structural source-grep pins on every load-bearing render string plus the simplified- catch contract. Behavioral coverage is deferred to the heavy script (tests/heavy/frontmatter_scan_wallclock.sh, T6) because runDoctor calls process.exit unconditionally and can't be driven from bun:test directly; refactoring runDoctor to return rather than exit is a separate TODO. Plan + cross-model review: ~/.claude/plans/system-instruction-you-are-working-hidden-lollipop.md Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * docs: v0.38.2.0 release notes, Phase 2 design sketch, heavy wall-clock smoke - CHANGELOG.md: ELI10-lead-first release entry per CLAUDE.md voice rules. Names the user-visible behavior change, the per-source partial render, the performance numbers table, the "things to watch" caveats. Credits @garrytan-agents for PR #1287's diagnosis. - VERSION + package.json: 0.37.11.0 -> 0.38.2.0. - docs/architecture/frontmatter-scan-incremental.md: Phase 2 design sketch for DB-backed scan state. Schema, migration shape, writer paths (sync-side UPSERT + incremental scan + autopilot cycle phase), doctor reader, sequencing concerns, two-phase rollout plan. Starting point for the follow-up PR — sub-second steady-state doctor needs incremental state, but the schema migration carries its own contract surface (forward-reference bootstrap, schema-drift E2E, PGLite-vs-Postgres parity) that deserves its own focused PR. - tests/heavy/frontmatter_scan_wallclock.sh (new, manual / nightly per tests/heavy/README.md): seeds a synthetic 60K-file brain (10K real + 50K under node_modules/) and asserts gbrain doctor completes in <15s with frontmatter_integrity: ok. Codex C7 caught that the original plan's 1500-file budget was too small to be a meaningful guard — at that scale the test passes BEFORE AND AFTER the fix, proving nothing. 60K is the minimum that catches the descent-into-vendor-trees regression. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * fix: adversarial review followups — CLI hint, deadline-vs-await race, between-source breadcrumb Codex adversarial review caught 4 real bugs in the v0.38.2.0 wave. All four fixed before ship. #1 (user-facing): `gbrain frontmatter validate` takes a filesystem PATH, not a source id. Pre-fix the NOT SCANNED hint pointed users at `gbrain frontmatter validate src-a` — which would fail with "no such directory", breaking the very remediation this PR ships to give them. Fix: render `src.source_path` instead. #2 (correctness): between sources, `await dbPageCountForSource(src.id)` ran unchecked. A slow query could blow past the deadline, then scanOneSource was still called and returned `status='partial'` with `files_scanned=0` — misleading ("partial scan" when actually zero files were scanned). Fix: add a post-await deadline re-check; mark source + remainder as 'skipped' if the budget already burned. #3 (UX): when the outer-loop deadline check fired BETWEEN sources, `aborted_at_source` stayed null and the doctor message said "PARTIAL SCAN" with no source name. Fix: stamp `aborted_at_source` with the source we were about to start. #4 (correctness): the COUNT query had no per-call deadline. A wedged Postgres pool could make a single COUNT hang past the budget and defeat the wall-clock guarantee. Fix: Promise.race against the remaining deadline; on timeout, resolve null and the post-await re-check (#2) marks the source skipped. Tests: 3 new regression cases in brain-writer-partial-scan.test.ts pinning the fixed contracts (skipped-vs-partial under slow COUNT, hanging COUNT within deadline, aborted_at_source before any source starts). 8648 pass / 0 fail across the full suite. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * docs(README): refresh production-brain stats — 8.2x pages, 5.6x people, 7.4x companies Pre-update line (months stale): "17,888 pages, 4,383 people, 723 companies, 21 cron jobs running autonomously, built in 12 days." Fresh counts from ~/git/brain (the wintermute production brain): - pages: 17,888 → 146,646 (8.2x) - people: 4,383 → 24,585 (5.6x) - companies: 723 → 5,339 (7.4x) - cron jobs running: 21 → 66 (113 total, 66 enabled per ~/git/wintermute/workspace/ops/cron-snapshot.json) Dropped "built in 12 days" — at 146K pages the initial-velocity claim is stale narrative that no longer matches the current scale story. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
317 lines
13 KiB
TypeScript
317 lines
13 KiB
TypeScript
import { describe, expect, test, beforeAll, afterAll, beforeEach, afterEach } from 'bun:test';
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import { mkdtempSync, rmSync, writeFileSync, readFileSync, existsSync, mkdirSync, symlinkSync } from 'fs';
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import { join } from 'path';
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import { tmpdir } from 'os';
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import {
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autoFixFrontmatter,
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writeBrainPage,
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scanBrainSources,
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BrainWriterError,
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} from '../src/core/brain-writer.ts';
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import { PGLiteEngine } from '../src/core/pglite-engine.ts';
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import { resetPgliteState } from './helpers/reset-pglite.ts';
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const fence = '---';
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describe('autoFixFrontmatter', () => {
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test('strips null bytes', () => {
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const input = `${fence}\ntitle: ok\n${fence}\n\nbody\x00drop\x00here`;
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const { content, fixes } = autoFixFrontmatter(input);
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expect(content.includes('\x00')).toBe(false);
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expect(fixes.some(f => f.code === 'NULL_BYTES')).toBe(true);
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});
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test('inserts closing --- before heading when MISSING_CLOSE', () => {
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const input = `${fence}\ntype: concept\ntitle: ok\n# A heading\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input);
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expect(fixes.some(f => f.code === 'MISSING_CLOSE')).toBe(true);
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// After fix, parsing should find a closing --- before the heading.
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const idxClose = content.indexOf('---', 3);
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const idxHeading = content.indexOf('# A heading');
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expect(idxClose).toBeGreaterThan(0);
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expect(idxClose).toBeLessThan(idxHeading);
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});
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test('rewrites nested-quote title to single-quoted', () => {
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const input = `${fence}\ntype: concept\ntitle: "Phil "Nick" Last"\n${fence}\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input);
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expect(fixes.some(f => f.code === 'NESTED_QUOTES')).toBe(true);
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// Outer wrapper is now single quotes.
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expect(content).toMatch(/^title: '.*'\s*$/m);
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});
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test('removes mismatched slug field', () => {
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const input = `${fence}\ntype: concept\ntitle: hi\nslug: wrong-slug\n${fence}\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input, { filePath: 'people/jane-doe.md' });
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expect(fixes.some(f => f.code === 'SLUG_MISMATCH')).toBe(true);
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expect(content).not.toMatch(/^slug:/m);
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});
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test('idempotent: running twice produces no diff and no fixes on second pass', () => {
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const input = `${fence}\ntype: concept\ntitle: "Phil "Nick" Last"\n${fence}\n\nbody\x00`;
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const first = autoFixFrontmatter(input);
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const second = autoFixFrontmatter(first.content);
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expect(second.content).toBe(first.content);
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expect(second.fixes).toEqual([]);
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});
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test('clean input: no fixes, content unchanged', () => {
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const input = `${fence}\ntype: concept\ntitle: ok\n${fence}\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input);
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expect(content).toBe(input);
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expect(fixes).toEqual([]);
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});
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// v0.37.9.0 — Step 3a canonical-style normalization for tags/aliases arrays.
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// The validator post-v0.37.5.0 no longer flags `tags: ["yc"]` as broken,
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// but this pass still rewrites it for consistency with serializeFrontmatter.
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test('step 3a: normalizes JSON-style double-quoted tags to single-quoted', () => {
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const input = `${fence}\ntype: person\ntags: ["yc", "w2025"]\n${fence}\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input);
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expect(fixes.some(f => f.code === 'NESTED_QUOTES')).toBe(true);
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expect(content).toContain("tags: ['yc', 'w2025']");
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expect(content).not.toContain('tags: ["yc", "w2025"]');
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});
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test('step 3a: apostrophe in item falls back to double quotes', () => {
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const input = `${fence}\ntype: person\ntags: ["Men's Fashion", "yc"]\n${fence}\n\nbody`;
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const { content } = autoFixFrontmatter(input);
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// Apostrophe item keeps double quotes; clean item uses single.
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expect(content).toContain(`tags: ["Men's Fashion", 'yc']`);
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});
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test('step 3a: empty item handled as empty single-quoted scalar', () => {
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const input = `${fence}\ntype: person\ntags: ["", "yc"]\n${fence}\n\nbody`;
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const { content } = autoFixFrontmatter(input);
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expect(content).toContain(`tags: ['', 'yc']`);
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});
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test('step 3a: non-allow-listed keys untouched (metrics, scores, etc.)', () => {
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const input = `${fence}\ntype: company\nmetrics: ["1", "2", "3"]\nscores: ["a", "b"]\n${fence}\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input);
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// Only `tags` and `aliases` are in the allow-list.
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expect(content).toContain('metrics: ["1", "2", "3"]');
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expect(content).toContain('scores: ["a", "b"]');
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expect(fixes.some(f => f.code === 'NESTED_QUOTES')).toBe(false);
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});
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test('step 3a applies to aliases: key as well as tags:', () => {
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const input = `${fence}\ntype: person\naliases: ["Bob", "Robert"]\n${fence}\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input);
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expect(fixes.some(f => f.code === 'NESTED_QUOTES')).toBe(true);
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expect(content).toContain("aliases: ['Bob', 'Robert']");
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});
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// codex outside-voice review (D7-2): when step 3a AND step 3 both fire on
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// the same file, the audit must record ONE NESTED_QUOTES entry, not two.
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// Otherwise frontmatter_integrity counts double-rewrites as two separate
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// files needing repair.
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test('step 3a + step 3 dedup: one NESTED_QUOTES fix record per file', () => {
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const input = `${fence}\ntype: person\ntitle: "Phil "Nick" Last"\ntags: ["yc", "w2025"]\n${fence}\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input);
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const nestedQuotesFixes = fixes.filter(f => f.code === 'NESTED_QUOTES');
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expect(nestedQuotesFixes.length).toBe(1);
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// Both rewrites applied to the content.
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expect(content).toContain("tags: ['yc', 'w2025']");
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expect(content).toMatch(/^title: '.*'\s*$/m);
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});
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test('step 3a: idempotent (running twice on already-normalized leaves content unchanged)', () => {
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const input = `${fence}\ntype: person\ntags: ['yc', 'w2025']\n${fence}\n\nbody`;
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const { content, fixes } = autoFixFrontmatter(input);
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expect(content).toBe(input);
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expect(fixes).toEqual([]);
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});
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});
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describe('writeBrainPage', () => {
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let tmp: string;
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beforeEach(() => {
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tmp = mkdtempSync(join(tmpdir(), 'brain-writer-'));
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});
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afterEach(() => {
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rmSync(tmp, { recursive: true, force: true });
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});
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test('happy path: writes file inside source', () => {
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const file = join(tmp, 'people', 'jane.md');
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const content = `${fence}\ntype: person\ntitle: Jane\n${fence}\n\nhello`;
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writeBrainPage(file, content, { sourcePath: tmp });
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expect(readFileSync(file, 'utf8')).toBe(content);
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});
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test('throws BrainWriterError when path is outside sourcePath', () => {
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const elsewhere = mkdtempSync(join(tmpdir(), 'brain-writer-other-'));
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try {
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const offending = join(elsewhere, 'evil.md');
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expect(() =>
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writeBrainPage(offending, 'content', { sourcePath: tmp }),
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).toThrow(BrainWriterError);
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} finally {
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rmSync(elsewhere, { recursive: true, force: true });
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}
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});
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test('writes a centralized .bak before mutating an existing file', () => {
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// v0.36.x #902: backups land under ~/.gbrain/backups/frontmatter/... not
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// next to the source file (pre-fix littered the brain tree with .bak
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// files that broke gitignore expectations). The returned backupPath is
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// the contract — the test asserts both the path shape and that the
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// backup faithfully captures the pre-write content.
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const file = join(tmp, 'people', 'jane.md');
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mkdirSync(join(tmp, 'people'), { recursive: true });
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const original = `${fence}\ntype: person\ntitle: Old\n${fence}\n\nold`;
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writeFileSync(file, original);
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const backupRoot = mkdtempSync(join(tmpdir(), 'gbrain-test-backups-'));
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try {
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const { backupPath } = writeBrainPage(
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file,
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`${fence}\ntype: person\ntitle: New\n${fence}\n\nnew`,
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{ sourcePath: tmp, backupRoot },
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);
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expect(backupPath).toBeDefined();
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// Centralized — under the test-injected backupRoot, NOT a sibling .bak.
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expect(existsSync(file + '.bak')).toBe(false);
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expect(backupPath!.startsWith(backupRoot + '/')).toBe(true);
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expect(backupPath!.endsWith('.bak')).toBe(true);
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expect(existsSync(backupPath!)).toBe(true);
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expect(readFileSync(backupPath!, 'utf8')).toBe(original);
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} finally {
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rmSync(backupRoot, { recursive: true, force: true });
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}
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});
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test('autoFix: true repairs nested quotes before writing', () => {
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const file = join(tmp, 'people', 'jane.md');
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const broken = `${fence}\ntype: person\ntitle: "Phil "Nick" Last"\n${fence}\n\nbody`;
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const { fixes } = writeBrainPage(file, broken, { sourcePath: tmp, autoFix: true });
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expect(fixes.some(f => f.code === 'NESTED_QUOTES')).toBe(true);
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expect(readFileSync(file, 'utf8')).toMatch(/^title: '.*'\s*$/m);
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});
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});
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describe('scanBrainSources (PGLite)', () => {
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let tmp: string;
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let engine: PGLiteEngine;
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// One PGLite per file — beforeEach wipes data only. PGLite cold-start is
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// ~20s on CI; sharing one engine across 6 tests in this block saves ~2 min.
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beforeAll(async () => {
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engine = new PGLiteEngine();
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await engine.connect({});
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await engine.initSchema();
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});
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afterAll(async () => {
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await engine.disconnect();
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});
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beforeEach(async () => {
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await resetPgliteState(engine);
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tmp = mkdtempSync(join(tmpdir(), 'brain-writer-scan-'));
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});
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afterEach(() => {
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rmSync(tmp, { recursive: true, force: true });
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});
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async function registerSource(id: string, path: string) {
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await engine.executeRaw(
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`INSERT INTO sources (id, name, local_path) VALUES ($1, $1, $2)
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ON CONFLICT (id) DO UPDATE SET local_path = EXCLUDED.local_path`,
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[id, path],
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);
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}
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test('returns ok=true for empty source', async () => {
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await registerSource('empty', tmp);
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const report = await scanBrainSources(engine);
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expect(report.ok).toBe(true);
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expect(report.total).toBe(0);
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const empty = report.per_source.find(s => s.source_id === 'empty');
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expect(empty).toBeDefined();
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expect(empty!.total).toBe(0);
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});
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test('detects errors across multiple sources', async () => {
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const srcA = join(tmp, 'a');
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const srcB = join(tmp, 'b');
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mkdirSync(srcA, { recursive: true });
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mkdirSync(srcB, { recursive: true });
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writeFileSync(join(srcA, 'p1.md'), `${fence}\ntype: x\ntitle: ok\n${fence}\n\nbody\x00`);
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writeFileSync(join(srcB, 'p2.md'), `${fence}\ntype: x\ntitle: "P "I" L"\n${fence}\n\nbody`);
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await registerSource('alpha', srcA);
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await registerSource('beta', srcB);
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const report = await scanBrainSources(engine);
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expect(report.ok).toBe(false);
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expect(report.total).toBeGreaterThan(0);
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const alpha = report.per_source.find(s => s.source_id === 'alpha')!;
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const beta = report.per_source.find(s => s.source_id === 'beta')!;
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expect(alpha.errors_by_code.NULL_BYTES).toBeGreaterThanOrEqual(1);
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expect(beta.errors_by_code.NESTED_QUOTES).toBeGreaterThanOrEqual(1);
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});
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test('respects sourceId filter', async () => {
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const srcA = join(tmp, 'a');
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const srcB = join(tmp, 'b');
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mkdirSync(srcA, { recursive: true });
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mkdirSync(srcB, { recursive: true });
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writeFileSync(join(srcA, 'bad.md'), `${fence}\ntype: x\ntitle: ok\n${fence}\n\nbody\x00`);
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writeFileSync(join(srcB, 'bad.md'), `${fence}\ntype: x\ntitle: ok\n${fence}\n\nbody\x00`);
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await registerSource('alpha', srcA);
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await registerSource('beta', srcB);
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const onlyA = await scanBrainSources(engine, { sourceId: 'alpha' });
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expect(onlyA.per_source.length).toBe(1);
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expect(onlyA.per_source[0]!.source_id).toBe('alpha');
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});
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test('skips registered source with missing path', async () => {
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await registerSource('ghost', join(tmp, 'does-not-exist'));
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const report = await scanBrainSources(engine);
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const ghost = report.per_source.find(s => s.source_id === 'ghost')!;
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expect(ghost.total).toBe(0);
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});
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test('skips symlinks (matches sync no-symlink policy)', async () => {
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mkdirSync(join(tmp, 'real'), { recursive: true });
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writeFileSync(join(tmp, 'real', 'good.md'), `${fence}\ntype: x\ntitle: ok\n${fence}\n\nbody`);
|
|
// Create a symlink loop: tmp/real/loop -> tmp/real
|
|
try {
|
|
symlinkSync(join(tmp, 'real'), join(tmp, 'real', 'loop'));
|
|
} catch {
|
|
// Some CI environments forbid symlink creation; skip the assertion.
|
|
return;
|
|
}
|
|
await registerSource('with-symlink', tmp);
|
|
const report = await scanBrainSources(engine);
|
|
// The walk should complete without infinite-looping; at most one .md
|
|
// entry visited (via the real path, not the symlink).
|
|
expect(report.per_source[0]!.total).toBe(0);
|
|
});
|
|
|
|
test('AbortSignal before scan: every source marked skipped (v0.38.2.0 partial-state contract)', async () => {
|
|
const src = join(tmp, 'big');
|
|
mkdirSync(src, { recursive: true });
|
|
for (let i = 0; i < 50; i++) {
|
|
writeFileSync(join(src, `p${i}.md`), `${fence}\ntype: x\ntitle: t${i}\n${fence}\n\nbody`);
|
|
}
|
|
await registerSource('big', src);
|
|
const ctrl = new AbortController();
|
|
ctrl.abort();
|
|
const report = await scanBrainSources(engine, { signal: ctrl.signal });
|
|
// v0.38.2.0 changed the contract: instead of an empty per_source array
|
|
// (which hid the fact that sources weren't checked), the report now
|
|
// includes a 'skipped' entry per source the outer loop never reached.
|
|
// Doctor renders these as "NOT SCANNED" so the user knows.
|
|
expect(report.per_source.length).toBe(1);
|
|
expect(report.per_source[0].status).toBe('skipped');
|
|
expect(report.per_source[0].files_scanned).toBe(0);
|
|
expect(report.partial).toBe(true);
|
|
expect(report.ok).toBe(false);
|
|
});
|
|
});
|