Files
gbrain/test/embed-stale.serial.test.ts
T
5d42f3295e v0.41.22.0 feat: type-unification cathedral — 94 types → 15 canonical (closes #1479) (#1542)
* Merge branch 'master' into garrytan/type-taxonomy-unification

Resolve VERSION, package.json, CHANGELOG conflicts with v0.41.22.0
on top, preserving master's v0.41.19.0 entry below.

* feat: v0.41.22.0 type-unification cathedral — collapse 94 types to 15 (closes #1479)

Ships gbrain-base-v2 as the new install default (15 canonical types: 14
+ note catch-all) and the unify-types PROTECTED Minion handler that
runs the gbrain-base→v2 migration end-to-end on existing brains.

What this delivers:
- gbrain-base-v2.yaml standalone schema pack (no extends:) with 14
  canonical page_types + 9 cluster mapping_rules + catch-all sentinel
- 3 new schema-pack primitives: runRetypeCore (chunked UPDATE with
  legacy_type stamping), runPageToLinkCore (edge-shaped pages →
  link rows), runPageToAliasCore (concept-redirect → slug_aliases)
- rewriteLinksBatch for N-pair atomic FK rewrite
- Migration v104 slug_aliases table (forward-bootstrap probed on both
  engines for safe upgrade chain)
- New engine method resolveSlugWithAlias(slug, sourceOrSources) on
  both Postgres + PGLite with multi-source ambiguity warning
- inferTypeAndSubtypeFromPack overload + subtypes: + mapping_rules:
  + migration_from: schema-pack manifest extensions
- findPackSuccessors version-range walker (1.x / 1.0.x / exact match)
- expandTypeFilter for --type back-compat (D14): legacy aliases route
  through mapping_rules → canonical+subtype before the SQL filter fires
- 3 new onboard checks: pack_upgrade_available, type_proliferation,
  dangling_aliases (source-scoped per F12)
- unify-types Minion handler (PROTECTED, manual_only via render.ts
  allowlist per D17): retype-explicit → retype-catch-all →
  page-to-link → page-to-alias → final sync → active-pack flip
- alias_resolved 1.05x post-fusion search boost stage; KNOBS_HASH_VERSION
  bumped 5→6 (one-time cache miss on upgrade, self-healing in TTL)
- ELIGIBLE_TYPES for facts extraction extended with v2 canonicals
  (codex F-ELIGIBLE: blocker not v0.43 follow-up)

Tests: 79 new unit/integration cases + 3 E2E cases covering all 9
production clusters end-to-end. 124-case verification on the cache-key
+ build-llms fixes. KNOBS_HASH_VERSION assertions updated in 3 tests.

Plan: ~/.claude/plans/system-instruction-you-are-working-transient-elephant.md
(16 locked decisions D1-D17, 12 baseline fixes F7-F21 absorbed from
codex outside voice).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: CI verify failures — system-of-record allow-comment + schema-unify manifest registration

Two CI failures on PR #1542:

1. check:system-of-record flagged page-to-link.ts:207 addLinksBatch as
   a direct write to a derived table. The call IS the reconcile surface
   for page_to_link mapping_rules — it converts edge-shaped pages into
   canonical link rows under the PROTECTED unify-types Minion handler,
   source-scoped, atomic per-rule. Added the canonical
   `// gbrain-allow-direct-insert: <reason>` comment on the same line.

2. check:resolver emitted 11 orphan_trigger warnings for `schema-unify`
   because the skill was added to skills/RESOLVER.md without a
   corresponding entry in skills/manifest.json. Added the registration
   under the existing skills[] array.

bun run verify: 28/28 checks pass locally.

* fix: CI test failures — schema-unify conformance + eligibility regression

Six test failures across shards 2 + 10 on PR #1542:

1. resolver.test.ts: round-trip parser requires frontmatter triggers to
   be quoted (`- "..."` or `- '...'`). schema-unify shipped with bare
   YAML strings; quoted the 10 triggers to round-trip correctly.

2. skills-conformance.test.ts (×3): schema-unify SKILL.md was missing
   the required Contract, Anti-Patterns, and Output Format sections
   that every conformant skill must declare. Added all three:
   - Contract: inputs / outputs / side effects / failure modes
   - Anti-Patterns: 5 DON'Ts including the autopilot trust boundary
   - Output Format: per-phase stderr lines + celebration summary +
     JSON envelope shape

3. facts-eligibility.test.ts (×2): the v0.41.22 ELIGIBLE_TYPES
   expansion added `concept` to the eligible list, but the existing
   test suite pins concept as rejected (it's `extractable: true` in
   the schema pack but the v0.41.11 contract documented this as
   "cosmetic on the backstop path because backstop uses hardcoded
   ELIGIBLE_TYPES"). Removed `concept` from the expansion; other v2
   canonicals (media, tweet, atom, analysis) stay. Comment updated
   to document the deliberate omission.

All 6 failing tests now pass locally (370/370 across the 3 affected
files). bun run verify: 28/28 checks green.

* fix: harden findPackSuccessors test against shard pollution

CI shard 8 reported 1 fail (1.00ms — too fast for any real loadActivePack
file I/O) on `finds gbrain-base-v2 as successor of gbrain-base@1.0.0`.
Local triple-run passes 9/9 in isolation.

Root cause: the existing afterEach reset clears the module-level pack
cache AFTER each test, but the FIRST test in the file inherits whatever
state sibling files in the same bun shard process left behind. With
24+ schema-pack tests in shard 8 (mutate, mutate-audit, best-effort,
registry-reload, manifest-v041_2, etc.) running before this file, the
first test can read a poisoned cache.

Fix: add `beforeEach(_resetPackCacheForTests)`. Two-sided reset
guarantees clean state regardless of file ordering within the shard.

bun run verify: 28/28 checks pass.

* fix: quarantine two flaky tests to serial runner

CI shard 1 + shard 8 each surfaced one intermittent failure:

shard 1: buildBrainTools > execute() on put_page with valid namespace
shard 8: findPackSuccessors > finds gbrain-base-v2 as successor

Both pass cleanly in isolation. Both are concurrency races against
shared in-shard state:

- brain-allowlist.test.ts shares a singleton PGLiteEngine across 18
  tests with a beforeEach DELETE FROM pages. With max-concurrency=4,
  two put_page tests can interleave their TRUNCATE + write phases,
  so the auto-link/extract sub-steps inside put_page race against
  the sibling test's DELETE.
- schema-pack-find-pack-successors.test.ts reads bundled YAML packs
  via loadActivePack. The module-level pack cache is shared across
  parallel tests in the same shard; the previous beforeEach reset
  helped but didn't fully isolate against concurrent file reads
  under CI load.

Fix per CLAUDE.md test-isolation lint rule R2 (concurrency-fragile
files belong in the .serial.test.ts quarantine): rename both files
to *.serial.test.ts. Serial runner picks them up at max-concurrency=1.
49/49 serial files pass locally. 28/28 verify checks pass.

* fix: quarantine embed-stale test to serial runner

CI shard 9 reported 6 failures, all from the embedStaleForSource describe
block, all ~120-150ms each — classic shared-engine concurrency race shape.
Passes 7/7 locally in isolation.

Root cause: embed-stale.test.ts shares a singleton PGLiteEngine across 7
tests with beforeEach resetPgliteState. Under bun's max-concurrency=4 in
the parallel shard, two tests can interleave their TRUNCATE + seedPage +
upsertChunks + embedStaleForSource flow, so one test's stale-chunk count
sees another test's mid-flight writes.

Same fix as brain-allowlist.serial.test.ts and
schema-pack-find-pack-successors.serial.test.ts: rename to *.serial.test.ts
so the serial runner picks it up at max-concurrency=1.

bun run verify: 28/28 checks pass. 7/7 embed-stale tests pass via serial.

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-27 07:01:28 -07:00

231 lines
7.6 KiB
TypeScript

/**
* Tests for src/core/embed-stale.ts (v0.40 D15.2).
*
* Hermetic — uses an injected `embedFn` so no network call lands. Validates:
* - empty stale set → done:true, embedded:0
* - multi-batch run → embed every stale chunk, advance cursor correctly
* - kill mid-flight (signal.aborted) → aborted:true, partial progress preserved
* - resume from cursor → picks up where prior call left off (DB predicate)
* - per-page embedFn throw → logged + skipped, NOT propagated; chunks stay NULL
*
* Why PGLite: validates the engine.listStaleChunks/getChunks/upsertChunks
* roundtrip the helper depends on, not just the loop control flow.
*/
import { describe, test, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import { resetPgliteState } from './helpers/reset-pglite.ts';
import { embedStaleForSource } from '../src/core/embed-stale.ts';
import type { ChunkInput } from '../src/core/types.ts';
let engine: PGLiteEngine;
beforeAll(async () => {
engine = new PGLiteEngine();
await engine.connect({});
await engine.initSchema();
}, 30000);
afterAll(async () => {
await engine.disconnect();
});
beforeEach(async () => {
await resetPgliteState(engine);
});
/** Seed a page with N stale chunks (no embedding) into the default source. */
async function seedPageWithStaleChunks(slug: string, chunkCount: number): Promise<void> {
await engine.putPage(slug, {
type: 'note',
title: slug,
compiled_truth: `# ${slug}\n\nseeded`,
});
const chunks: ChunkInput[] = Array.from({ length: chunkCount }, (_, i) => ({
chunk_index: i,
chunk_text: `chunk ${i} of ${slug}`,
chunk_source: 'compiled_truth',
token_count: 4,
embedding: undefined, // NULL = stale
}));
await engine.upsertChunks(slug, chunks);
}
/** Deterministic fake embedder — returns unit-length 1536-dim vectors with
* first dim = text length, so we can assert specific chunks got embedded. */
function fakeEmbedFn(texts: string[]): Promise<Float32Array[]> {
return Promise.resolve(
texts.map((t) => {
const v = new Float32Array(1536);
v[0] = t.length;
v[1] = 1;
return v;
}),
);
}
describe('embedStaleForSource', () => {
test('empty stale set returns done:true with zero embedded', async () => {
const result = await embedStaleForSource(engine, 'default', {
embedFn: fakeEmbedFn,
});
expect(result).toEqual({
embedded: 0,
chunksProcessed: 0,
pagesProcessed: 0,
lastCursor: null,
done: true,
aborted: false,
});
});
test('embeds every stale chunk across multiple pages in one call', async () => {
await seedPageWithStaleChunks('a', 5);
await seedPageWithStaleChunks('b', 3);
const result = await embedStaleForSource(engine, 'default', {
embedFn: fakeEmbedFn,
});
expect(result.done).toBe(true);
expect(result.aborted).toBe(false);
expect(result.embedded).toBe(8);
expect(result.pagesProcessed).toBe(2);
// Verify DB: zero stale remaining for default.
const stale = await engine.countStaleChunks({ sourceId: 'default' });
expect(stale).toBe(0);
});
test('respects batchSize for cursor pagination', async () => {
await seedPageWithStaleChunks('a', 3);
await seedPageWithStaleChunks('b', 3);
let batchCount = 0;
const result = await embedStaleForSource(engine, 'default', {
embedFn: fakeEmbedFn,
batchSize: 2,
onProgress: () => {
batchCount++;
},
});
expect(result.embedded).toBe(6);
// 2-chunk batches across 6 stale rows = at least 3 progress callbacks.
expect(batchCount).toBeGreaterThanOrEqual(3);
});
test('IRON-RULE: aborted mid-flight → aborted:true, partial progress preserved', async () => {
await seedPageWithStaleChunks('a', 4);
await seedPageWithStaleChunks('b', 4);
await seedPageWithStaleChunks('c', 4);
const controller = new AbortController();
// Batch size 4 = one page per batch. concurrency 1 = serialize keys.
// Abort fires inside embedFn for page 'b', so 'a' lands, 'b' aborts mid-call,
// and the third batch ('c') never starts.
const result = await embedStaleForSource(engine, 'default', {
batchSize: 4,
concurrency: 1,
signal: controller.signal,
embedFn: async (texts) => {
if (texts.some((t) => t.includes(' of b'))) {
controller.abort();
throw new Error('aborted'); // simulates HTTP abort throw
}
return fakeEmbedFn(texts);
},
});
expect(result.aborted).toBe(true);
expect(result.done).toBe(false);
expect(result.embedded).toBe(4); // only 'a' landed
// 'b' and 'c' (8 chunks) remain stale
const stale = await engine.countStaleChunks({ sourceId: 'default' });
expect(stale).toBe(8);
});
test('IRON-RULE: kill + resume — second call picks up via embedding-IS-NULL predicate', async () => {
await seedPageWithStaleChunks('a', 4);
await seedPageWithStaleChunks('b', 4);
// First call aborts when 'b' is reached
const controller = new AbortController();
const first = await embedStaleForSource(engine, 'default', {
batchSize: 4,
concurrency: 1,
signal: controller.signal,
embedFn: async (texts) => {
if (texts.some((t) => t.includes(' of b'))) {
controller.abort();
throw new Error('aborted');
}
return fakeEmbedFn(texts);
},
});
expect(first.aborted).toBe(true);
expect(first.embedded).toBe(4); // 'a' landed
// Second call with NO cursor — predicate excludes already-embedded chunks
const second = await embedStaleForSource(engine, 'default', {
embedFn: fakeEmbedFn,
});
expect(second.done).toBe(true);
expect(first.embedded + second.embedded).toBe(8);
const stale = await engine.countStaleChunks({ sourceId: 'default' });
expect(stale).toBe(0);
});
test('per-page embedFn throw is logged but does NOT propagate', async () => {
await seedPageWithStaleChunks('good', 2);
await seedPageWithStaleChunks('bad', 2);
let badCount = 0;
const result = await embedStaleForSource(engine, 'default', {
embedFn: async (texts) => {
if (texts.some((t) => t.includes('bad'))) {
badCount++;
throw new Error('intentional embed failure');
}
return fakeEmbedFn(texts);
},
});
// The helper itself didn't throw
expect(result.done).toBe(true);
expect(badCount).toBe(1);
// 'good' chunks got embedded; 'bad' chunks stayed NULL
expect(result.embedded).toBe(2);
const stale = await engine.countStaleChunks({ sourceId: 'default' });
expect(stale).toBe(2);
});
test('source-scoped: does not touch other sources', async () => {
await engine.executeRaw(
`INSERT INTO sources (id, name, config) VALUES ('other', 'other', '{"federated":true}'::jsonb) ON CONFLICT (id) DO NOTHING`,
);
await seedPageWithStaleChunks('a', 3);
await engine.putPage('b', {
type: 'note',
title: 'b',
compiled_truth: '# b\n\nseeded',
}, { sourceId: 'other' });
await engine.upsertChunks(
'b',
Array.from({ length: 3 }, (_, i) => ({
chunk_index: i,
chunk_text: `other ${i}`,
chunk_source: 'compiled_truth',
token_count: 4,
embedding: undefined,
})),
{ sourceId: 'other' },
);
const result = await embedStaleForSource(engine, 'default', {
embedFn: fakeEmbedFn,
});
expect(result.embedded).toBe(3);
// 'other' source still has 3 stale chunks
const otherStale = await engine.countStaleChunks({ sourceId: 'other' });
expect(otherStale).toBe(3);
});
});