Files
gbrain/test/upgrade-checkpoint.serial.test.ts
T
dffb607ef7 v0.30.1 feat: operational hardening — make upgrades just work on Supabase (#750)
* v0.30.1 Lane A: connection-manager foundation + X1 initSchema routing

Routes Postgres queries by query type:
  - read() goes to the Supabase pooler (port 6543, fast)
  - ddl() and bulk() go to direct (port 5432, 30min stmt timeout, mwm 256MB)

Auto-detects Supabase via hostname pooler.supabase.com or port 6543.
Override with GBRAIN_DIRECT_DATABASE_URL. Kill-switch via
GBRAIN_DISABLE_DIRECT_POOL=1 falls back to single-pool legacy path.

Foundation modules (Lane A scope):
- src/core/connection-manager.ts: read/ddl/bulk/healthCheck, parent-CM
  inheritance (T5/X1), cached Promise<Sql> lazy init (A1), kill-switch
  inheritance (A2), Supabase URL auto-derivation
- src/core/url-redact.ts: redactPgUrl + redactDeep (F3)
- src/core/retry-matcher.ts: typed predicates for stmt-timeout / lock /
  conn errors (C4)
- src/core/connection-audit.ts: ~/.gbrain/audit/connection-events JSONL
  with ISO-week rotation; doctor tail-reads last 5 errors (F8)
- scripts/check-pg-url-redaction.sh: CI grep guard against unredacted
  postgresql:// URL leaks (F3)

Engine integration:
- PostgresEngine.connect: instantiates instance-owned ConnectionManager,
  inherits from parentConnectionManager when set (worker engines, sync,
  cycle), shares pool with module-singleton path
- PostgresEngine.disconnect: tears down direct pool first
- PostgresEngine.initSchema: routes DDL through connectionManager.ddl()
  when dual-pool active (X1 part 1; lock semantics replacement is Lane B)
- cli.ts:connectEngine(opts): probeOnly skips initSchema entirely (X1
  part 2 — get_health, upgrade --status will use this)

Tests added (51 new cases):
- test/url-redact.test.ts: 11 cases
- test/retry-matcher.test.ts: 13 cases
- test/connection-manager.test.ts: 27 cases (URL detection, derive,
  kill-switch, parent inheritance, dual-pool routing modes)

Foundation for Lanes B-E. Sequential lane work continues.

Plan: ~/.claude/plans/system-instruction-you-are-working-stateless-wadler.md

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.30.1 Lane B: migration runner retry + verify hooks + namespaced --force flags

Adds Migration interface fields:
  - idempotent: boolean (default true; explicit false blocks verify-hook
    re-runs on destructive migrations)
  - verify: optional post-condition probe; runs after migration claims success

Migration retry wrapper (Cherry D3 / Finding F2):
  - 3 attempts with 5s/15s/45s backoff (env GBRAIN_MIGRATE_BACKOFF_MS=0
    for tests)
  - Retries only on statement_timeout (57014) or connection-reset patterns
  - Pre-attempt: logs idle-in-transaction blockers via getIdleBlockers
  - On exhaustion: throws MigrationRetryExhausted with named PID + suggested
    pg_terminate_backend() recovery command

Verify-hook self-healing (Cherry D6 / Codex X3):
  - On verify=false + idempotent=true → re-runs migration once silently
  - On verify=false + idempotent=false → throws MigrationDriftError
  - --skip-verify CLI flag bypasses for operator override

withRefreshingLock helper (Cherry T4 / Codex A4 / X1 part 3):
  - setInterval refresh every TTL/6 ms during long-running work
  - SELECT 1 backend-alive heartbeat per refresh tick
  - Heartbeat hang past 30s → log + clear interval; lock TTL auto-expires
  - LockUnavailableError when acquire fails (caller decides retry)
  - buildTenantLockId(scope) appends current_database() suffix for
    multi-tenant safety (Cherry D4)

Namespaced --force flags (Codex T5):
  - --force-orchestrator: write 'retry' markers for ALL wedged orchestrators
  - --force-schema: re-runs runMigrations against current config.version
  - --force / --force-all: both
  - --force-retry vX.Y.Z: existing single-version reset (preserved)
  - --skip-verify: bypass verify-hook drift detection on a single run

Test additions:
  - test/migrate-extensions.test.ts: 14 cases (idempotent default,
    error envelopes, MIGRATIONS contract)
  - test/db-lock-refresh.test.ts: 10 cases (LockUnavailableError,
    buildTenantLockId multi-tenant, opts shape)
  - test/migrate.test.ts: updated 2 existing cases (PR #356 retry shape +
    function-name anchor) for v0.30.1 retry-wrapper semantics

156 unit tests passing across the v0.30.1 surface so far.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.30.1 Lane C: backfill primitive + registry + X4 + X5

First-class generic backfill runner (Fix 3). Generalizes the
keyset+checkpoint+adaptive-batch pattern from
src/core/backfill-effective-date.ts so future backfills (embedding_voyage
in v0.30.2, etc.) reuse one tested runner.

NEW src/core/backfill-base.ts:
  - runBackfill() with keyset pagination, config-table checkpoint, adaptive
    batch halving on stmt timeout, conn-drop reconnect, max-errors bail
  - ensureBackfillIndex() verifies/creates partial index CONCURRENTLY (P2/X4)
  - clearBackfillCheckpoint() for --fresh path
  - T3 fix: writes go through engine.withReservedConnection so BEGIN /
    SET LOCAL / UPDATE / COMMIT execute on the SAME backend (otherwise
    SET LOCAL evaporates between pooled executeRaw calls)

NEW src/core/backfill-registry.ts:
  - effective_date: implemented (wraps existing computeEffectiveDate)
  - emotional_weight: implemented (wraps computeEmotionalWeight + stamps
    new emotional_weight_recomputed_at column)
  - embedding_voyage: declared-only in v0.30.1 (multi-column embedding
    schema lands in v0.30.2)

NEW src/commands/backfill.ts:
  - gbrain backfill <kind> [--batch-size N] [--concurrency N] [--resume]
                          [--fresh] [--dry-run] [--keep-index] [--max-errors N]
  - gbrain backfill list — shows registered backfills + status
  - X5 admission control: clampConcurrency() forces --concurrency to
    GBRAIN_DIRECT_POOL_SIZE - 1 ceiling (always reserves 1 conn for HNSW
    + heartbeat + doctor probes). Loud-warns when user requests above.

Schema migration v44 (X4 / Codex C8 fix):
  - pages.emotional_weight_recomputed_at TIMESTAMPTZ
  - emotional_weight = 0 is a VALID steady-state value per migration v40,
    so the original P2 predicate ("WHERE emotional_weight = 0") would have
    been a permanent large index over normal data. The corrected backlog
    predicate is "emotional_weight_recomputed_at IS NULL"; the partial
    index drops naturally as the cycle phase + this backfill stamp the
    column over time.
  - idempotent: true (ADD COLUMN ... NULL is metadata-only)

CLI integration:
  - src/cli.ts: registers `backfill` subcommand
  - reindex-frontmatter stays as thin alias for v0.30.1 back-compat;
    canonical entrypoint is now `gbrain backfill effective_date`

Test additions:
  - test/backfill-base.test.ts: 11 cases (keyset, checkpoint, dry-run,
    resume/fresh, maxRows cap, withReservedConnection routing, error
    paths, clearCheckpoint, ensureBackfillIndex)
  - test/backfill-concurrency-clamp.test.ts: 6 cases (X5 admission control)

173 unit tests passing across Lanes A+B+C of v0.30.1.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.30.1 Lane D: HNSW lifecycle manager + A3 atomic-swap

Extends src/core/vector-index.ts with the v0.30.1 lifecycle layer.
The original chunkEmbeddingIndexSql / applyChunkEmbeddingIndexPolicy
contract is preserved unchanged.

New surfaces:
  - checkActiveBuild(engine, indexName): probes pg_stat_activity for an
    active CREATE INDEX or REINDEX on the named index. Used as pre-op
    guard so dropAndRebuild doesn't compete with a build already in
    flight (Supabase auto-maintenance, parallel gbrain procs).

  - dropZombieIndexes(engine, tableNames): startup sweep of
    indisvalid=false rows on gbrain tables. Drops them with
    DROP INDEX IF EXISTS, BUT skips any zombie that has an active build
    still in pg_stat_activity (codex Fix-5 in-progress-build guard).
    Wired into PostgresEngine.initSchema() — runs after migrations +
    verifySchema, best-effort, never blocks engine.connect().

  - dropAndRebuild(engine, spec, opts): A3 atomic-swap pattern:
      1. checkActiveBuild → bail if another build is active (--force overrides)
      2. CREATE INDEX CONCURRENTLY <name>_rebuild_<unix-ms> via
         engine.withReservedConnection (CONCURRENTLY can't run in a txn)
      3. Atomic swap inside engine.transaction:
           DROP INDEX <old-name>
           ALTER INDEX <temp-name> RENAME TO <old-name>
      4. If step 2 fails (OOM, timeout, conn drop), the OLD index stays
         intact and search keeps serving queries. This is the headline
         A3 win — no production-degraded silent failure mode.

  - monitorBuild(engine, indexName, onProgress, opts): poll
    pg_stat_activity every 30s; emit elapsed_ms + size_bytes (via
    pg_relation_size) + pid. Used by gbrain backfill embedding_voyage
    when batch > 1000 triggers a rebuild.

  - isSupabaseAutoMaintenance(active): predicate on application_name
    (matches "supabase" / "postgres-meta"). Used by dropAndRebuild to
    log + back off when Supabase auto-maintenance is doing the rebuild.

Engine integration:
  - PostgresEngine.initSchema() calls dropZombieIndexes after verifySchema.
    Surfaces zombie counts via console.log.
  - Best-effort wrapped in try/catch: pg_stat_activity / pg_index access
    can be restricted on managed Postgres tiers; gbrain shouldn't fail
    engine.connect() over diagnostic queries.

Test additions (18 cases):
  - test/vector-index-lifecycle.test.ts:
    * chunkEmbeddingIndexSql contract (3 cases) — pre-existing behavior preserved
    * applyChunkEmbeddingIndexPolicy contract (1 case)
    * checkActiveBuild (4 cases, including PGLite no-op + best-effort failure)
    * isSupabaseAutoMaintenance (3 cases)
    * dropZombieIndexes (4 cases, including in-progress-build guard)
    * dropAndRebuild atomic-swap (3 cases, including PGLite + active-build bail
      + temp-name format assertion)

191 unit tests passing across Lanes A+B+C+D of v0.30.1.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.30.1 Lane E: upgrade pipeline checkpoint + brain_id binding + get_health migrations

NEW src/core/upgrade-checkpoint.ts:
  - Cherry D5: persists step-by-step progress through gbrain post-upgrade
    so partial failures can be resumed via gbrain upgrade --resume.
    Steps: pull → install → schema → features → backfills → verify.
  - Codex X2: checkpoint binds to brain identity via sha256(database_url)
    (userinfo stripped before hashing so cred rotations don't invalidate).
    PGLite uses sha256(database_path). Cross-brain checkpoint application
    is now refused with reason='brain_mismatch'.
  - F4 fall-through: validateCheckpoint returns reason='no_checkpoint'
    when none exists, enabling silent fall-through to a full upgrade.
  - All-complete detection: stale checkpoints (every step done) return
    reason='all_complete' so the next run clears + re-runs from scratch.
  - markStepComplete + markStepFailed maintain the partial-state shape.

T2 preserved: upgrade.ts still re-execs `gbrain post-upgrade` so the NEW
binary's migration registry runs (the existing re-exec pattern is correct
per codex round 1's plan-breaking finding). The checkpoint module is the
substrate that Lane E's --resume / --status surfaces will plumb through
in v0.30.2.

D7 + C3 contract committed:
  - BrainHealth.schema_version: '1' (literal type) — additive-only contract
    pinned for MCP get_health consumers.
  - BrainHealth.migrations: { schema, orchestrator } — explicit two-ledger
    diagnostic surface (codex T5 namespacing). Both fields are OPTIONAL
    in v0.30.1 — engines can populate them in v0.30.2 without a contract
    bump. Backwards/forwards compat: clients default-handle missing fields.

VERSION: 0.30.0 → 0.30.1
package.json: synced

Test additions (18 cases):
  - test/upgrade-checkpoint.test.ts:
    * computeBrainId: userinfo strip, DB-distinct hashes, stable hex (5 cases)
    * write/load round-trip: roundtrip, missing file, malformed JSON,
      clear (4 cases)
    * validateCheckpoint: F4 no_checkpoint, X2 brain_mismatch, partial
      → resumeAt, all_complete, first-step pending (5 cases)
    * markStepComplete/markStepFailed: append, idempotent, clear-failed,
      failed-state shape (4 cases)

209 unit tests passing across all 5 lanes of v0.30.1 (Lanes A-E core
foundations). Plumbing into upgrade.ts CLI + doctor checks +
get_health() implementation is layered in via follow-up commits within
this PR.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.30.1 e2e + test isolation: integration smoke + serial quarantine

NEW test/e2e/v030_1-integration-pglite.test.ts (14 cases):
  PGLite integration smoke proving Lane A-E surfaces work together.
    Lane B: migration runner applies v44 (emotional_weight_recomputed_at)
            cleanly; config.version reaches LATEST_VERSION
    Lane C: backfill registry resolves all 3 entries; emotional_weight +
            effective_date backfills on empty brain return examined=0
            cleanly
    Lane D: dropZombieIndexes / checkActiveBuild on PGLite are no-ops
    Lane E: upgrade-checkpoint round-trips with brain_id; X2 mismatch
            refused; F4 fall-through detected via reason='no_checkpoint';
            full step progression to all_complete

Test isolation hygiene (scripts/check-test-isolation.sh):
  - test/connection-manager.test.ts → connection-manager.serial.test.ts
  - test/backfill-concurrency-clamp.test.ts → .serial.test.ts
  - test/upgrade-checkpoint.test.ts → .serial.test.ts
  All three files mutate process.env (kill-switch, GBRAIN_DIRECT_POOL_SIZE,
  GBRAIN_HOME) which would race other tests in the parallel runner.
  *.serial.test.ts quarantine ensures they run at --max-concurrency=1.
  Choice between withEnv() refactor and serial quarantine made on the side
  of preserving existing well-formed test code.

E2E coverage status:
  - v030_1-integration-pglite.test.ts (this commit): 14 cases, all green
  - backfill-perf-pglite.test.ts: 1 case, green (no regression)
  - cycle-recompute-emotional-weight-pglite.test.ts: green (no regression)
  - multi-source-emotional-weight-pglite.test.ts: green (no regression)
  - dream-synthesize-pglite.test.ts: 14 cases, green (no regression)
  - anomalies-pglite.test.ts + salience-pglite.test.ts: 6 cases, green

Postgres-only E2Es (migration-flow, http-transport, hnsw-lifecycle,
connection-routing) require DATABASE_URL + a real Postgres+pgvector
container per the CLAUDE.md E2E lifecycle. They land as separate
DATABASE_URL-gated work — not regressed by v0.30.1 changes; their
preconditions just aren't met in the current run environment.

`bun run verify` (typecheck + 4 shell pre-checks + test-isolation lint)
passes cleanly.

Final v0.30.1 unit + integration test count: 4547 pass, 0 regressions.
Two pre-existing flaky failures (BrainRegistry serial test + warm-create
perf gate under shard contention) confirmed unrelated to this branch.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: bump version and changelog (v0.30.1)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-08 13:25:48 -07:00

215 lines
6.6 KiB
TypeScript

import { describe, expect, test, beforeEach, afterEach } from 'bun:test';
import { mkdtempSync, rmSync, existsSync, writeFileSync } from 'node:fs';
import { join } from 'node:path';
import { tmpdir } from 'node:os';
import {
computeBrainId,
loadCheckpoint,
writeCheckpoint,
clearCheckpoint,
validateCheckpoint,
markStepComplete,
markStepFailed,
ALL_UPGRADE_STEPS,
type UpgradeCheckpoint,
} from '../src/core/upgrade-checkpoint.ts';
let tmpHome: string;
let originalHome: string | undefined;
beforeEach(() => {
tmpHome = mkdtempSync(join(tmpdir(), 'gbrain-upgrade-checkpoint-test-'));
originalHome = process.env.GBRAIN_HOME;
process.env.GBRAIN_HOME = tmpHome;
});
afterEach(() => {
if (originalHome === undefined) delete process.env.GBRAIN_HOME;
else process.env.GBRAIN_HOME = originalHome;
if (existsSync(tmpHome)) rmSync(tmpHome, { recursive: true, force: true });
});
describe('computeBrainId — X2 multi-tenant safety', () => {
test('strips userinfo before hashing — same hash for cred-rotated URL', () => {
const a = computeBrainId('postgresql://user:passA@host:5432/db');
const b = computeBrainId('postgresql://user:passB@host:5432/db');
expect(a).toBe(b);
});
test('different DBs hash differently', () => {
const a = computeBrainId('postgresql://u:p@host:5432/db_a');
const b = computeBrainId('postgresql://u:p@host:5432/db_b');
expect(a).not.toBe(b);
});
test('returns a stable 16-char hex string', () => {
const id = computeBrainId('postgresql://u:p@host:5432/db');
expect(id).toMatch(/^[0-9a-f]{16}$/);
});
test('no URL → still returns a hash (PGLite path)', () => {
const id = computeBrainId(undefined);
expect(id).toMatch(/^[0-9a-f]{16}$/);
});
test('null URL → same hash as undefined', () => {
const a = computeBrainId(null);
const b = computeBrainId(undefined);
expect(a).toBe(b);
});
});
describe('writeCheckpoint + loadCheckpoint round-trip', () => {
test('writes and reads a complete checkpoint', () => {
const cp: UpgradeCheckpoint = {
brain_id: 'abc123',
started_at: '2026-05-08T00:00:00.000Z',
from_version: '0.30.0',
to_version: '0.30.1',
completed_steps: ['pull', 'install'],
};
writeCheckpoint(cp);
const loaded = loadCheckpoint();
expect(loaded).toEqual(cp);
});
test('loadCheckpoint returns null when no file', () => {
expect(loadCheckpoint()).toBeNull();
});
test('loadCheckpoint returns null for malformed JSON', () => {
const cp: UpgradeCheckpoint = {
brain_id: 'abc',
started_at: '2026-05-08T00:00:00.000Z',
from_version: '0.30.0',
to_version: '0.30.1',
completed_steps: [],
};
writeCheckpoint(cp);
// Corrupt the file. gbrainPath resolves to GBRAIN_HOME/.gbrain/<file>.
const path = join(tmpHome, '.gbrain', 'upgrade-checkpoint.json');
writeFileSync(path, 'not json {{');
expect(loadCheckpoint()).toBeNull();
});
test('clearCheckpoint removes the file', () => {
const cp: UpgradeCheckpoint = {
brain_id: 'abc',
started_at: '2026-05-08T00:00:00.000Z',
from_version: '0.30.0',
to_version: '0.30.1',
completed_steps: [],
};
writeCheckpoint(cp);
expect(loadCheckpoint()).not.toBeNull();
clearCheckpoint();
expect(loadCheckpoint()).toBeNull();
});
});
describe('validateCheckpoint — F4 fall-through + X2 mismatch', () => {
test('F4: no checkpoint → falls through to full upgrade', () => {
const r = validateCheckpoint('any-brain-id');
expect(r.valid).toBe(false);
expect(r.reason).toBe('no_checkpoint');
});
test('X2: brain mismatch → reason=brain_mismatch', () => {
const cp: UpgradeCheckpoint = {
brain_id: 'brain-A',
started_at: '2026-05-08T00:00:00.000Z',
from_version: '0.30.0',
to_version: '0.30.1',
completed_steps: ['pull'],
};
writeCheckpoint(cp);
const r = validateCheckpoint('brain-B');
expect(r.valid).toBe(false);
expect(r.reason).toBe('brain_mismatch');
expect(r.checkpoint?.brain_id).toBe('brain-A');
});
test('partial completion → resumeAt = next un-completed step', () => {
const cp: UpgradeCheckpoint = {
brain_id: 'brain-A',
started_at: '2026-05-08T00:00:00.000Z',
from_version: '0.30.0',
to_version: '0.30.1',
completed_steps: ['pull', 'install'],
};
writeCheckpoint(cp);
const r = validateCheckpoint('brain-A');
expect(r.valid).toBe(true);
expect(r.resumeAt).toBe('schema');
expect(r.checkpoint?.brain_id).toBe('brain-A');
});
test('all steps complete → reason=all_complete', () => {
const cp: UpgradeCheckpoint = {
brain_id: 'brain-A',
started_at: '2026-05-08T00:00:00.000Z',
from_version: '0.30.0',
to_version: '0.30.1',
completed_steps: [...ALL_UPGRADE_STEPS],
};
writeCheckpoint(cp);
const r = validateCheckpoint('brain-A');
expect(r.valid).toBe(false);
expect(r.reason).toBe('all_complete');
});
test('first step pending → resumeAt = first step', () => {
const cp: UpgradeCheckpoint = {
brain_id: 'brain-A',
started_at: '2026-05-08T00:00:00.000Z',
from_version: '0.30.0',
to_version: '0.30.1',
completed_steps: [],
};
writeCheckpoint(cp);
const r = validateCheckpoint('brain-A');
expect(r.valid).toBe(true);
expect(r.resumeAt).toBe(ALL_UPGRADE_STEPS[0]);
});
});
describe('markStepComplete + markStepFailed', () => {
const base: UpgradeCheckpoint = {
brain_id: 'a',
started_at: '2026-05-08T00:00:00.000Z',
from_version: '0.30.0',
to_version: '0.30.1',
completed_steps: [],
};
test('markStepComplete appends new step', () => {
const cp = markStepComplete({ ...base }, 'pull');
expect(cp.completed_steps).toEqual(['pull']);
});
test('markStepComplete is idempotent', () => {
let cp = markStepComplete({ ...base }, 'pull');
cp = markStepComplete(cp, 'pull');
expect(cp.completed_steps).toEqual(['pull']);
});
test('markStepComplete clears prior failed_step', () => {
const cp: UpgradeCheckpoint = {
...base,
failed_step: 'pull',
failed_step_error: { message: 'broken' },
};
const out = markStepComplete(cp, 'pull');
expect(out.failed_step).toBeUndefined();
expect(out.failed_step_error).toBeUndefined();
});
test('markStepFailed sets failed_step + error info', () => {
const err = Object.assign(new Error('timeout'), { code: '57014' });
const cp = markStepFailed({ ...base }, 'schema', err);
expect(cp.failed_step).toBe('schema');
expect(cp.failed_step_error?.message).toBe('timeout');
expect(cp.failed_step_error?.code).toBe('57014');
});
});