Files
gbrain/eval
Garry TanandClaude Opus 4.6 839258dc42 feat(eval): Day 6 — adversarial-injections + Cat 6 prose-scale + Cat 11 multi-modal
Three modules that together cover BrainBench v1 Cat 6 (prose-scale
extraction fidelity) and Cat 11 (multi-modal ingest fidelity).

**eval/runner/adversarial-injections.ts** — 6 deterministic content
transforms shared by Cat 10 (adversarial.ts, 22 hand-crafted cases) and
Cat 6 (prose-scale variants). Each injection produces a modified content
string + a structured GoldDelta describing what the extractor MUST and
MUST NOT produce. Kinds:
  - code_fence_leak — fake [X](people/fake) inside ``` fence, must NOT extract
  - inline_code_slug — `people/fake` in backticks, must NOT extract
  - substring_collision — "SamAI" near real `people/sam`, exactly one link
  - ambiguous_role — "works with" vs "works at", downgrade type to mentions
  - prose_only_mention — strip markdown link syntax, bare name → mentions only
  - multi_entity_sentence — pack 4+ entities into one clause, extract all

Mulberry32 PRNG keeps variant generation deterministic under fixed seed.
Codex flagged the original plan's wording ("extract injection engine from
adversarial.ts") as overstated — adversarial.ts is a static case list,
not a reusable engine. This module is NEW code.

**eval/runner/cat6-prose-scale.ts** — Runner. Loads world-v1, applies all
6 injection kinds to sampled base pages (default 50 variants per kind ×
6 kinds = 300 variants), runs extractPageLinks on each, compares to gold
delta. Emits per-kind + overall metrics (precision, recall, F1,
code_fence_leak_rate, substring_fp_rate, pages_with_links_coverage,
mean_links_per_page). **v1 verdict is always "baseline_only"** — no
gating threshold per codex fix #9 (current extractor residuals make
>0.80 unreachable; v1 records a baseline, regression guard triggers on
drop below it).

**eval/runner/cat11-multimodal.ts** — PDF + HTML + audio runners.
Fixtures load from eval/data/multimodal/<modality>/fixtures.json
manifests; each modality skips gracefully when manifest missing or
(audio) when neither GROQ_API_KEY nor OPENAI_API_KEY is set. Metrics:
  - PDF: char-level similarity via Levenshtein + optional entity_recall
  - HTML: word-recall over normalized tokens (multiset semantics)
  - Audio: WER (word error rate) via Levenshtein on word sequences
Fixtures are NOT committed; a future eval:fetch-multimodal script will
download them hash-verified from public sources (arXiv CC-licensed
papers, Wikipedia CC-BY-SA, Common Voice CC0).

Injectable audio transcriber (`opts.transcribe`) means tests don't need
GROQ/OpenAI keys — stubbed transcriptions exercise the WER math path
directly.

**Tests (60 new):** adversarial-injections (19) — per-kind assertions +
dispatcher coverage + slug regex conformance; cat6 (12) — variant
determinism, scoreVariant shape, aggregate per-kind + overall metrics,
corpus resolver slug rules; cat11 (29) — charSimilarity / wordRecall /
wer math, htmlToText strips scripts + decodes entities, HTML modality
with real fixtures, audio modality gracefully skips without key + uses
stub transcriber correctly.

All 60 tests pass in 48ms + 41ms.
Total eval suite now: 227 pass, 0 fail.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-04-20 21:59:30 +08:00
..

BrainBench

Public benchmark for personal knowledge brain agent stacks. Ships 4 adapter configurations scored side-by-side on a 240-page rich-prose fictional corpus (twin-amara). Measures retrieval, extraction quality, and per-link-type accuracy.

What this answers: "Does the knowledge graph layer do useful work, or is gbrain just a thin wrapper over vector+keyword hybrid?" Headline: gbrain beats the closest external baseline (hybrid-without-graph, same embedder, same chunking) by +31 points P@5. The graph layer is load-bearing.

5-minute quickstart

# 1. Run the full benchmark (4 adapters × 5 runs, ~15 min wall clock)
bun run eval:run

# 2. Fast iteration (N=1 single run)
bun run eval:run:dev

# 3. Just the type-accuracy report
bun run eval:type-accuracy

# 4. Explore the canonical world (contributor-facing UI)
bun run eval:world:view

What's in the box

eval/
├── data/
│   ├── world-v1/             Canonical world (committed). 240 sharded JSON files.
│   │                          One file per entity + _ledger.json metadata.
│   ├── amara-life-v1/        (v0.15+) Fictional-life corpus generated on demand.
│   │                          inbox/slack/calendar/meetings/notes/docs +
│   │                          corpus-manifest.json. Gitignored; run
│   │                          `bun run eval:generate-amara-life` once.
│   └── gold/                 (v0.15+) Sealed qrels + perturbation gold.
│                              entities, backlinks, qrels, contradictions, poison,
│                              personalization-rubric, implicit-preferences, citations.
│                              Empty templates in v0.15; filled in v1 Complete.
├── schemas/                  (v0.15+) Portable JSON Schema contracts.
│                              corpus-manifest, public-probe (PublicQuery with gold
│                              stripped), tool-schema (12 read + 3 dry_run, 32K cap),
│                              transcript, scorecard (N ∈ {1,5,10}), evidence-contract.
│                              Pins the v1→v2 Inspect AI driver-swap boundary.
├── generators/
│   ├── gen.ts                Opus-backed world-v1 generator (cached, $80 cap)
│   ├── world.ts              World-schema scaffolder
│   ├── world-html.ts         World explorer HTML renderer (XSS-safe)
│   ├── amara-life.ts         (v0.15+) Deterministic amara-life skeleton.
│   │                          Mulberry32 PRNG, 15 contacts, 50+300+20+8+40 items,
│   │                          plants 10/5/5/3 perturbations at fixed positions.
│   └── amara-life-gen.ts     (v0.15+) Opus prose expansion. Structured cache key
│                              (schema_version + template_hash + item_spec_hash),
│                              $20 hard-stop, --dry-run for smoke tests.
├── runner/
│   ├── multi-adapter.ts      4-adapter side-by-side scorer (N=5, seeded order)
│   ├── type-accuracy.ts      Per-link-type accuracy vs gold from _facts (Cat 2)
│   ├── adversarial.ts        Cat 10 robustness — 22 hand-crafted edge cases
│   ├── all.ts                Master runner (current: sequential execSync;
│                              v1 Complete Day 10: rewrites to async + p-limit(2))
│   ├── before-after.ts       Original v1 BEFORE/AFTER retrieval run
│   ├── types.ts              Adapter, Page (extended with email|slack|cal|note),
│                              Query, RankedDoc. PublicPage/PublicQuery land here
│                              when sealed qrels enforcement ships (v1 Complete Day 9).
│   ├── adapters/
│   │   ├── ripgrep-bm25.ts         EXT-1: classic IR baseline (BM25 over grep hits)
│   │   ├── vector-only.ts          EXT-2: pure cosine similarity, same embedder
│   │   └── hybrid-nograph.ts       EXT-3: gbrain hybrid with graph disabled
│   └── queries/
│       ├── tier5-fuzzy.ts          30 vague-recall queries (hand-authored)
│       ├── tier5_5-synthetic.ts    50 synthetic outsider queries (AI-authored, labeled)
│       ├── validator.ts            Schema + temporal as_of_date + one-slash slug rule
│       └── index.ts                Aggregator + validateAll()
├── cli/
│   ├── world-view.ts         Render + open world.html
│   ├── query-validate.ts     Validate a Query[] file
│   └── query-new.ts          Scaffold a Query template
└── reports/                  Benchmark scorecards (gitignored)

Three contributor paths

Path 1: Reproduce a published scorecard

# 1. Check out the specific gbrain commit referenced in the scorecard
git checkout <commit-sha>
# 2. Run the full benchmark
bun run eval:run
# 3. Compare your numbers to the scorecard. Deterministic adapters should
#    match exactly. Embedding-based adapters should land within tolerance bands.

Path 2: Submit a new external adapter

See CONTRIBUTING.md for the adapter submission flow. Short version:

  1. Implement eval/runner/adapters/<your-adapter>.ts conforming to the Adapter interface in eval/runner/types.ts.
  2. Add a unit test file alongside.
  3. Wire your adapter into eval/runner/multi-adapter.ts (one line).
  4. bun run eval:run:dev to verify.
  5. Open a PR.

Path 3: Write Tier 5.5 externally-authored queries

The T5.5 queries currently in the repo are AI-authored (author: "synthetic-outsider-v1") as a placeholder. Real outside researchers should:

  1. bun run eval:world:view to understand the canonical world
  2. bun run eval:query:new --tier externally-authored --author "@your-handle"
  3. Edit the scaffolded template with a real query + gold slugs
  4. bun run eval:query:validate path/to/your.json
  5. Submit via eval/external-authors/<your-handle>/queries.json in a PR

See CONTRIBUTING.md for the query-submission template.

Methodology one-pager

  • Corpus: 240 Opus-generated fictional biographical pages. Fixed, committed, zero private data. Reproducibility baseline for any run.
  • Gold: Each page's _facts metadata defines canonical relationships. The scorer never shows _facts to the adapters — raw pages only cross the ingestion boundary (structural enforcement in Adapter.init).
  • Metrics: P@5 and R@5 on relational queries (145 canonical from _facts, 80 tier-5 + tier-5.5). Type accuracy on extracted edges (eval/runner/type-accuracy.ts).
  • N=5 runs per adapter with page-order shuffle (seeded LCG; runs are reproducible). Stddev surfaces order-dependent adapter bugs. Deterministic adapters correctly show stddev=0.
  • Temporal queries require explicit as_of_date (validated at query authoring time; rejected at load if a temporal verb is present without it).

Adapter scorecard (most recent, N=5)

See docs/benchmarks/2026-04-18-brainbench-v1.md for the full report. Quick summary from bun run eval:run:

Adapter P@5 R@5
gbrain-after 49.1% 97.9%
hybrid-nograph 17.8% 65.1%
ripgrep-bm25 17.1% 62.4%
vector-only 10.8% 40.7%

The graph layer beats vector+keyword hybrid on relational queries by ~31 points; hybrid-without-graph barely edges BM25. That's the story.