Files
gbrain/test/e2e/system-of-record-invariant.test.ts
T
a73108b26f v0.32.2 feat: facts join system-of-record + 3-layer privacy + CI invariant gate (#885)
* schema: migration v51 facts_fence_columns + fresh-install parity

v0.32.2 commit 1/11.

Facts become FS-canonical via a `## Facts` fence on entity pages (mirror of
takes-fence). row_num + source_markdown_slug are the round-trip columns the
fence parser uses to reconcile markdown → DB.

Schema changes:
- ALTER TABLE facts ADD COLUMN IF NOT EXISTS row_num INTEGER
- ALTER TABLE facts ADD COLUMN IF NOT EXISTS source_markdown_slug TEXT
- CREATE UNIQUE INDEX idx_facts_fence_key (source_id, source_markdown_slug,
  row_num) WHERE row_num IS NOT NULL

Both columns nullable: pre-v0.32 rows don't have them until commit 6's
v0_32_2 orchestrator backfills via fence-append. The partial WHERE clause is
the Codex R2 collision guard — without it, two pre-v51 NULL-row_num rows on
the same (source_id, source_markdown_slug) coordinate would collide and fail
the migration on any populated v0.31 brain.

Fresh-install parity: the v40 CREATE TABLE block now declares the columns
from the start, so a brand-new install hits a single CREATE that already
has them and the v51 ALTERs no-op via IF NOT EXISTS. Existing brains pick
them up through the v51 migration.

Idempotent under all states (re-runs are no-ops). Metadata-only ALTERs on
PG 11+ and PGLite — no table rewrite. Partial-index syntax verified
against v40's existing idx_facts_unconsolidated precedent.

Tests:
- 6 new v51 cases in test/migrate.test.ts covering name, ADD COLUMN shape,
  nullable contract, partial-unique-index keys, the WHERE-NULL collision
  guard, and LATEST_VERSION progression.
- All 109 migration tests pass (was 103); schema walks 15 → 51 cleanly.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: facts-fence.ts + extract shared escape helpers from takes-fence

v0.32.2 commit 2/11.

New: src/core/facts-fence.ts — structural mirror of src/core/takes-fence.ts.
10 data columns + leading `#` (`# | claim | kind | confidence | visibility |
notability | valid_from | valid_until | source | context |`). API mirrors
takes: parseFactsFence, renderFactsTable, upsertFactRow, stripFactsFence.

Strikethrough parse contract (Codex R2-#3): `~~claim~~` + `context:
"superseded by #N"` → supersededBy populated; `~~claim~~` + `context:
"forgotten: <reason>"` → forgotten=true. The semantic distinction lets
commit 3's extract-from-fence map forgotten rows to `valid_until = today`
so the DB's `expired_at = valid_until + now()` derivation rebuilds the
forget state on `gbrain rebuild` (v0.32.3 follow-up).

Refactor: extracted shared primitives to src/core/fence-shared.ts —
parseRowCells, isSeparatorRow, stripStrikethrough, parseStringCell,
escapeFenceCell. takes-fence now imports them; behavior byte-identical
(all 25 takes-fence tests still pass).

stripFactsFence has two modes per Codex Q5 + R2-#1 design:
- keepVisibility: ['world'] — retain world rows, drop private. The mode
  both the chunker (Layer A) and get_page over remote MCP (Layer B) use.
  Private fact bytes never reach content_chunks.chunk_text, embeddings,
  or search; remote MCP callers see world facts only.
- default / empty array — drop the entire fence block. Defensive deny-
  by-default at the privacy boundary.

Tests: 36 new cases in test/facts-fence.test.ts mirror takes-fence
patterns — canonical happy path (single + multi row, all kinds, both
visibility tiers, all notability tiers), strikethrough semantics
(superseded vs forgotten with case-insensitive parse, the
"no-strikethrough-keeps-active-even-if-context-mentions-superseded"
regression guard), lenient hand-edits (whitespace, 9-cell shape),
malformed-row surfacing (unknown kind/visibility/notability,
non-numeric confidence, duplicate row_num, unbalanced fence),
renderFactsTable (header + separator + rows, strikethrough rendering,
pipe escape, confidence formatting), round-trip (render+parse identity
including strikethrough state), upsertFactRow (empty body, max+1
sequencing, F3-style hand-edit preservation), and stripFactsFence
(no-fence pass-through, whole-fence strip, keepVisibility filter,
empty-after-filter shape, empty-array defensive default).

76/76 tests across facts-fence + takes-fence + chunker-recursive pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: src/core/facts/extract-from-fence.ts — pure ParsedFact → NewFact mapper

v0.32.2 commit 3/11.

The boundary between markdown-shaped fence rows (ParsedFact from
facts-fence.ts) and DB-shaped engine rows (NewFact). Pure function, no
I/O. Resolves Codex Q7: engines stay markdown-unaware. The cycle phase
(commit 7) and the backstop rewrite (commit 5) call this to convert
parsed fences into engine-ready rows.

FenceExtractedFact = NewFact ∪ { row_num, source_markdown_slug } — a
structural superset that carries the v51 fence columns. Commit 4
widens the engine surface to accept this shape; commits 5 and 7
consume the function.

Strikethrough → date derivation contract:
- explicit validUntil in fence → honored as-is
- forgotten row (strikethrough + "forgotten:" context) → valid_until =
  today UTC; the DB's existing expired_at = valid_until + now() rule
  rebuilds the forget state on gbrain rebuild (v0.32.3 follow-up)
- supersededBy row without explicit validUntil → null; consolidator
  phase fills this in from the newer row's valid_from
- inactive-unrecognized (strikethrough + neither flag) → today; honors
  the user's strikethrough intent for unrecognized contexts

Determinism guard: nowOverride opt makes the today-stamping testable
without freezing global Date. Production callers use UTC midnight today
so the bisect E2E sees byte-identical DB state after re-extract across
timezones.

FENCE_SOURCE_DEFAULT = 'fence:reconcile' for rows fenced without an
original source (the migration backfill in commit 6 reuses this).

Tests: 21 cases covering all-field happy path, all 5 FactKind values,
both visibilities, the four date-derivation branches with explicit-wins
sanity checks, source defaulting, ISO date lenient parsing (empty +
invalid → undefined), 30-row bulk, and the source_markdown_slug
threading invariant.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: engine.insertFacts batch + deleteFactsForPage on both engines

v0.32.2 commit 4/11.

New BrainEngine surface for the reconciliation path:

  insertFacts(
    rows: Array<NewFact & { row_num: number; source_markdown_slug: string }>,
    ctx: { source_id: string },
  ): Promise<{ inserted: number; ids: number[] }>

  deleteFactsForPage(slug: string, source_id: string): Promise<{ deleted: number }>

insertFacts is the only entry point that persists v51 columns
(row_num, source_markdown_slug). Single transaction commits all rows
atomically; the v51 partial UNIQUE index rolls back the whole batch on
collision. Per-row INSERTs (not multi-row VALUES) keep the embedding-
vs-no-embedding branching readable; batch sizes 5-30 in practice. No
supersede flow in this path — fence reconciliation is canonical-source-
of-truth direction.

deleteFactsForPage scopes by (source_id, source_markdown_slug). Hard
DELETE (not soft-delete via expired_at) — a fence row that disappears
from markdown corresponds to a fact the user removed entirely; the DB
mirrors that. Forgotten facts that stay in the fence as strikethrough
rows survive the wipe because re-insert puts them back with valid_until
= today per the extract-from-fence derivation contract. Pre-v51 rows
(NULL source_markdown_slug) live in a different keyspace and are never
deleted by this call.

Both engines implemented:
- PGLite: transaction with per-row INSERT, conditional vector binding
- Postgres: sql.begin() transaction, postgres.js tagged template

Tests (13 new cases in test/insert-facts-batch.test.ts):
- empty batch returns inserted:0
- single-row + multi-row persistence, ids in input-order
- all NewFact + v51 columns round-trip
- v51 partial UNIQUE rolls back whole batch on collision
- different source_markdown_slug + different source_id values don't
  collide on same row_num
- deleteFactsForPage scoping (same source different page; same page
  different source; pre-v51 NULL-source_markdown_slug rows untouched)
- delete-then-reinsert round-trip (the cycle-phase pattern)

226 tests pass across facts surface + migrate + takes-fence (no
regressions in adjacent code).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: markdown-first fact write path in src/core/facts/backstop.ts

v0.32.2 commit 5/11.

THE rewrite. Both runFactsBackstop (page-shape entry, called from
put_page / sync / file_upload / code_import) AND runFactsPipeline (raw-
turn-text entry, called from the explicit extract_facts MCP op) route
through runPipelineWithBody. Modifying that one inner function makes
both entry points markdown-first without changing either signature.
Resolves Codex R2-#2 surface gap.

New: src/core/facts/fence-write.ts — writeFactsToFence orchestrator +
lookupSourceLocalPath helper.

Pipeline (post-dedup, per entity_slug group):
1. Acquire FS page-lock via src/core/page-lock.ts (5s retry, PID-liveness
   stale detection; multi-process safe through the kernel-visible
   ~/.gbrain/page-locks/<sha-of-slug>.lock file)
2. Read entity page from <source.local_path>/<slug>.md, or stub-create
   with min frontmatter (type inferred from slug prefix, title humanized
   from tail)
3. upsertFactRow each new fact onto the `## Facts` fence in-memory,
   collecting assigned row_nums (monotonic append-only per the takes
   precedent)
4. Atomic write: writeFileSync(.tmp) → re-readFileSync(.tmp) →
   parseFactsFence(.tmp) → on warnings: leave .tmp + JSONL surface +
   NO DB write; on clean: renameSync(.tmp → file). Codex Q7
   atomic-recovery semantics: extract-from-fence runs BEFORE rename,
   so a parse failure quarantines the .tmp without corrupting the
   canonical file
5. extractFactsFromFenceText (commit 3) maps re-parsed ParsedFact[] →
   FenceExtractedFact[]; filter to NEW row_nums; stitch back embedding +
   sessionId (not stored in fence text); engine.insertFacts batch
   (commit 4)

Three structural fallbacks to legacy DB-only insertFact:
- sources.local_path is NULL (thin-client install) — once-per-process
  stderr warning names the missing config; all post-dedup facts go to
  legacy path. Documented as named exception in the architecture doc
  (commit 11)
- f.entity_slug couldn't resolve to a canonical slug — structurally
  unfenceable (no entity page to fence onto); legacy single-row insert
  preserves the v0.31 semantic
- Fence parse-validation fails on a .tmp — that page's facts skip; do
  NOT fall through to legacy DB-only because the DB index for that
  page would be inconsistent with a broken fence

No re-entrancy guard needed: writeFactsToFence uses writeFileSync +
renameSync directly, NOT engine.putPage. No code path can re-trigger
runFactsBackstop on the markdown write. The architecture self-prevents
the recursion concern Codex Q7 raised. Documented in fence-write.ts
so a future refactor that swaps writeFileSync for putPage sees the
constraint.

Dedup unchanged: cosine similarity @ 0.95 against DB candidates, before
fence write. Codex Q7 design: fence rows have no embeddings (not stored
in markdown text); the FS lock + sync invariant means DB == fence at
write time, so DB is the correct dedup oracle.

Tests (11 new cases in test/fence-write.test.ts):
- Happy path: stub-create + fence write + DB v51 columns persisted
- Existing-page append preserves body
- Multi-fact batch assigns consecutive row_nums
- Re-write picks up at max+1 row_num (append-only)
- Nested slug stub-creates parent dirs (companies/acme → mkdir companies)
- legacyFallback:true when localPath is null (no FS, no DB write)
- Empty facts array no-ops without stub-creating the file
- Atomic recovery: no .tmp file left after success
- lookupSourceLocalPath: existing source, unknown source, NULL local_path

The multi-process FS lock contention test lives in
test/e2e/facts-lock-contention.test.ts (commit 10's invariant capstone,
since Bun.spawn is an E2E concern). These cover the in-process happy
and recovery paths.

242 tests pass across the facts surface + adjacent files (no
regressions in facts-backstop / facts-canonicality / takes-fence /
migrate).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: migration orchestrator v0_32_2.ts — backfill v0.31 facts to fences

v0.32.2 commit 6/11.

Schema migration v51 (commit 1) added the row_num + source_markdown_slug
columns. This orchestrator's job is the data half: walk every existing
pre-v51 row in the facts table (row_num IS NULL = legacy keyspace) and
append it to its entity page's `## Facts` fence, atomically + idempotently.

Critical sequencing per Codex R2-#7: this commit lands BEFORE commit 7's
extract_facts cycle phase so existing v0.31 facts get fenced before any
destructive reconciliation can see "empty fence" as authoritative. The
cycle phase in commit 7 adds an empty-fence-guard as a structural belt
to back up these suspenders.

Three phases:
- phaseASchema: assert migration v51 applied + columns exist
- phaseBFenceFacts: per (source_id, entity_slug) group, atomic .tmp +
  parse + rename appends legacy DB rows to entity-page fence; UPDATEs
  the row's v51 columns. Dry-run by default; refuses if any
  source.local_path is a dirty git tree (mirrors src/core/dry-fix.ts
  safety posture). Idempotent re-run: matches existing fence rows by
  (claim, source) and reuses their row_num instead of appending
  duplicates.
- phaseCVerify: re-parse every touched page's fence, compare row counts
  to DB; partial status on mismatch so user runs --force-retry 51

Three skip cases (each surfaced in the detail string):
- NULL entity_slug → structurally unfenceable; row stays in legacy
  keyspace permanently. Operator decides hand-curate vs delete.
- sources.local_path is NULL → thin-client / read-only brain; nothing
  to fence onto.
- Fence parse-validate fails on the .tmp → .tmp stays as quarantine
  evidence; the operator inspects.

Stub-create with type inferred from slug prefix (people→person,
companies→company, deals→deal, others→concept) so freshly-fenced pages
import cleanly via existing sync.

Tests (14 new cases in test/migrations-v0_32_2.test.ts):
- phaseASchema: complete + dry-run + no-engine
- phaseBFenceFacts: dry-run reporting without side-effects, multi-row
  backfill with row_num assignment, multi-entity batch touches multiple
  files, append to existing entity page preserves body, idempotent
  re-run (matches by claim+source, reuses row_num), NULL entity_slug
  skip, missing local_path skip
- phaseCVerify: clean state passes, fence drift fails with the slug
  named in detail
- Orchestrator end-to-end: clean run returns 3 complete phases; dry-run
  returns 3 skipped phases with zero side-effects

216 tests pass across migrations + facts surface (no regressions).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: extract_facts cycle phase + empty-fence guard (Codex R2-#7)

v0.32.2 commit 7/11.

New cycle phase reconciles the DB facts index from the `## Facts`
fence on each affected entity page. Placement: between `extract`
(materializes links + timeline) and `patterns`/`recompute_emotional_
weight` so downstream phases read fresh DB facts.

Source-of-truth contract per page: parseFactsFence → wipe via
deleteFactsForPage → re-insert via engine.insertFacts. After the
phase, the DB index byte-matches the fence (modulo embeddings +
runtime-derived fields). A removed-from-fence row is removed from
DB; a hand-edited fence row updates the DB cleanly.

Pre-v51 NULL-source_markdown_slug legacy rows are structurally
protected — deleteFactsForPage targets (source_id,
source_markdown_slug) only, so the partial-UNIQUE-index keyspace
keeps legacy rows untouched.

Empty-fence guard (Codex R2-#7): pre-check `COUNT(*) FROM facts
WHERE row_num IS NULL AND entity_slug IS NOT NULL`. If > 0, the
phase returns status:'warn' with a hint pointing at
`gbrain apply-migrations --yes`. Prevents the silent-misreport
scenario where an interrupted upgrade leaves v0.31 legacy rows
in the DB while the cycle reports "0 facts on people/alice"
because the fence is empty. Belt to the runtime backstop's
suspenders in commit 5.

Wired in src/core/cycle.ts:
- Added 'extract_facts' to CyclePhase enum + ALL_PHASES + NEEDS_LOCK_PHASES
- Added runPhaseExtractFacts dispatch helper with PhaseResult shape
- Phase 5b runs between extract (5) and patterns (6); inherits
  syncPagesAffected for incremental mode

Tests (10 new cases in test/extract-facts-phase.test.ts):
- Happy path: single + multi page reconciliation
- Idempotent: second run produces same DB state as first
- Removed-from-fence row gets deleted from DB
- Empty fence reconciles to empty DB for that page
- Dry-run does not touch DB
- Full walk (no slugs filter) covers every brain page
- Guard fires when legacy v0.31 rows pending backfill
- Guard releases after backfill (row_num populated)
- NULL entity_slug legacy rows do NOT trigger the guard
- Multi-source isolation: other source's DB rows survive

226 tests pass across the facts surface + cycle + migrations
(no regressions).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: 3-layer privacy strip + forget-as-fence (Codex R2 #1/#3/#5)

v0.32.2 commit 8/11.

Layer A — chunker strip (Codex R2-#1 P0):
src/core/chunkers/recursive.ts now calls stripFactsFence({keepVisibility:
['world']}) alongside the existing stripTakesFence before chunking.
Private fact text NEVER reaches content_chunks.chunk_text, embeddings,
or search. World facts remain searchable (public knowledge by
definition). Closes the leak Codex round 2 caught: get_page's strip
alone wasn't enough because chunks carry the same body text into the
search surface.

Layer B — get_page strip trigger flipped (Codex R2-#5):
src/core/operations.ts:413 strip trigger changes from `ctx.takesHolders-
AllowList` to `ctx.remote === true`. Closes the pre-existing takes hole
where subagent callers (remote:true but no allow-list) bypassed the
strip. Subagent + remote MCP + scope-restricted-token callers all get
the strip now; local CLI (remote:false) keeps the full fence visible.
Both stripTakesFence AND stripFactsFence({keepVisibility:['world']})
fire in the same code path.

Forget-as-fence (Codex R2-#3):
New src/core/facts/forget.ts forgetFactInFence({factId, reason}). When
the row has v51 columns + source.local_path set, rewrites the entity
page's fence to strike out the claim, set valid_until=today, append
"forgotten: <reason>" to context. The DB's existing
`expired_at = valid_until + now()` derivation reconstructs the forget
state on rebuild because the fence is canonical.

Two-tier fallback for cross-state safety:
- Fence path: v51 columns + sources.local_path set + fence file exists +
  fence row matches DB row_num → atomic .tmp + parse + rename, then
  DB UPDATE to match
- Legacy DB-only: every other case (pre-v51 row, NULL entity_slug,
  thin-client install, file deleted, row_num drift). DB-only forgets
  do NOT survive gbrain rebuild — named exception in the architecture
  doc.

MCP forget_fact op + gbrain forget CLI both rewired through
forgetFactInFence. New optional `--reason` flag on the CLI; new
`reason` param on the MCP op. Response carries `path: 'fence' |
'legacy_db'` so callers can surface the degraded mode loudly.

Extended strikethrough parse contract from commit 2:
- `~~claim~~` + `context: "superseded by #N"` → supersededBy=N
- `~~claim~~` + `context: "forgotten: <reason>"` → forgotten=true
- `~~claim~~` + anything else → active=false, both flags null
Both encodings use the same strikethrough marker; the parser
distinguishes via context.

Tests (38 new cases in test/privacy-strip-and-forget.test.ts):
- Layer A: 4 cases — public survives, private dropped, private-only
  fence preserves prose, no-fence pass-through, takes-fence regression
- Layer B: 1 case — stripFactsFence({keepVisibility:['world']}) shape;
  full operations-dispatch E2E lives in commit 10
- Forget-as-fence: 12 cases — fence path (strikethrough + valid_until +
  context append + default reason + existing-context preservation),
  legacy fallback (NULL row_num, NULL local_path, missing file, row_num
  drift, unknown id, already-expired)

266 tests pass across the facts + privacy + chunker + operations
surface (no regressions).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat: scripts/check-system-of-record.sh CI gate + function-scoped allow-list

v0.32.2 commit 9/11.

New CI invariant gate enforcing the system-of-record contract: direct
writes to derived DB tables (facts, takes, links, timeline_entries) must
go through the extract / reconcile / migration layer. Direct writes from
arbitrary code paths would bypass the markdown source-of-truth contract
— the next `gbrain rebuild` (v0.32.3) would lose the data because the
fence wasn't updated.

Banned methods (the v0.32.2 derived-write surface):
- engine.insertFact, engine.insertFacts
- engine.addLink, engine.addLinksBatch
- engine.addTimelineEntry
- engine.upsertTake
- engine.expireFact

Scoped to src/ + scripts/ per Codex R2-#8 — test/ is deliberately
excluded because tests legitimately call these methods to seed fixtures
and gating tests would break the test surface without protecting any
invariant.

Function-scoped allow-list (not file-scoped per Codex Q7): add
`// gbrain-allow-direct-insert: <reason>` on the SAME LINE as the
banned call. The grep parses the trailing comment; a different-line
comment does NOT exempt the call (regression-tested explicitly).
Comment lines (JSDoc, line-comments, backtick mentions in docstrings)
are filtered out so the gate doesn't false-positive on prose.

Wired into `bun run verify` (the canonical CI pre-test gate set).
Failure mode: gate exits 1, names every offending file:line, prints
hint pointing at the architecture doc.

Annotated 18 legitimate call sites:
- src/core/cycle/extract-facts.ts: reconcile fence → DB
- src/core/facts/backstop.ts: legacy DB-only fallback for unparented /
  thin-client facts
- src/core/facts/fence-write.ts: markdown-first reconcile path
- src/core/facts/forget.ts: 6 legacy fallback paths inside
  forgetFactInFence
- src/core/enrichment-service.ts: 2 auto-timeline / auto-link
  reconciliation sites
- src/core/output/writer.ts: 3 BrainWriter synthesize-phase sites
- src/core/operations.ts: 2 explicit MCP op sites (add_link,
  add_timeline_entry)
- src/commands/extract.ts: 5 canonical extract command sites
- src/commands/reconcile-links.ts: 2 code-graph reconciliation sites

Tests (6 new cases in test/check-system-of-record.test.ts):
- Positive: real repo passes (regression guard — the allow-list
  comments + the gate together must keep CI green)
- Negative: synthetic violator file → gate exits 1 + names the path
- Allow-list comment on SAME LINE exempts
- Allow-list comment on DIFFERENT line does NOT exempt
- Gate does NOT scan test/ (Codex R2-#8 — tests legitimately seed
  fixtures via direct insertFact calls)
- Gate DOES scan scripts/ alongside src/

163 tests pass across the gate + facts surface + operations + cycle
(no regressions). typecheck clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: system-of-record invariant E2E capstone

v0.32.2 commit 10/11.

The architectural rule prove-out. Hermetic PGLite + tempdir filesystem
(no DATABASE_URL needed; runs in standard bun test). Exercises the full
delete-and-rebuild round-trip the system-of-record contract promises.

Capstone test (full round-trip):
1. Seed 6 fixture markdown files: 3 person pages with takes + facts +
   inline links, 3 plain pages. Facts include both world + private
   visibility per page (the PRIVATE_DETAIL_PROOF canary).
2. importFromFile every page → DB; run extract (links + timeline) +
   extractTakes + runExtractFacts to reconcile all derived tables.
3. Snapshot facts + takes derived state.
4. DELETE FROM facts + takes + links + timeline_entries. Simulates the
   "DB lost; rebuild from repo" disaster scenario v0.32.3's
   `gbrain rebuild` will execute.
5. Re-import every file + re-reconcile. Re-import rebuilds tags
   (per Codex R2-#6: tags is reconciled by import-file.ts:315, NOT
   by extract phases).
6. Snapshot + diff. Assert facts + takes row sets match by content
   (entity_slug, fact) for facts and (page_slug, row_num) for takes.

Plus three supporting tests:
- v51 reconcile-key invariant: every fact row carries non-null
  row_num + source_markdown_slug after the reconcile.
- Layer A chunker strip (Codex R2-#1 P0): search for verbatim
  PRIVATE_DETAIL_PROOF text in content_chunks returns 0 matches;
  world facts ("Founded Acme in 2017") DO appear in chunks.
- Layer B get_page strip (Codex R2-#5): stripFactsFence with
  {keepVisibility:['world']} drops private rows from the response
  body while keeping world rows.

Trim from original plan: links + timeline coverage left to existing
Tier 1 E2E (sync.test.ts + backlinks.test.ts). The v0.32.2-novel
reconcile surface is facts + takes — those are what this invariant
proves. Cuts ~half the test runtime + scope without losing
v0.32.2 coverage.

4/4 pass in 2.23s. 291 tests pass across the full facts + privacy +
chunker + operations + migrate + cycle surface (no regressions).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.32.2 chore: VERSION + package.json + CHANGELOG manifesto + docs + migration guide

v0.32.2 commit 11/11. Release ceremony.

VERSION + package.json + bun.lock all aligned at 0.32.2.

CHANGELOG.md entry leads with the manifesto:

  > The GitHub repo is the system of record. The database is a derived
  > cache. We do not back up the database — we rebuild it from the repo.

Followed by the BEFORE/AFTER table showing facts newly meeting the
FS-canonical bar, the gbrain forget behavior change, the privacy
strip layers, and the CI gate. Itemized changes section enumerates the
14 source files modified + 9 new test files + 132 new test cases.

docs/architecture/system-of-record.md (new, ~250 lines): the canonical
contract doc. Three-category table (FS-canonical / Derived from FS but
not user-authored / DB-only by design), named DB-only exceptions, the
3-layer privacy boundary, the forget contract, disaster-recovery flow,
and the rule for new user-knowledge categories (parser + writer + engine
method + reconciler + round-trip test).

skills/migrations/v0.32.2.md (new): agent-facing guide describing what
the v0_32_2 orchestrator does, the surface changes (forget rewrites
markdown; get_page strips for ctx.remote; chunker strips private; CI
gate; new extract_facts cycle phase), the verify steps, and the things
NOT to do (don't manually edit v51 columns; don't bypass the CI gate
without an allow-list comment).

Closes the 11-commit bisect plan. Every commit leaves the tree green.
Each commit does one conceptual thing.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: v0.32.2 follow-up — update 5 tests that v0.32.2 surface changes broke, plus fix 2 pre-existing flakes

Five test updates for changes v0.32.2 introduced:

- test/core/cycle.serial.test.ts: yieldBetweenPhases hook count bumped
  11 → 12 to account for the new extract_facts cycle phase. Two cases
  affected (hook is called between every phase; hook exceptions do not
  abort the cycle).

- test/apply-migrations.test.ts: buildPlan skippedFuture expectation
  lists v0.32.2 alongside v0.31.0 at the end. Two cases affected (fresh
  install with v0.11.1 installed; Codex H9 regression with v0.12.0).

- test/facts-mcp-allowlist.serial.test.ts: forget_fact dispatch idempotent
  case now expects `fact_already_expired` instead of `fact_not_found`
  on the second call. v0.32.2's forgetFactInFence introduces the more
  precise discriminator — the first call expires the fact; the second
  call sees expired_at NOT NULL and surfaces the more accurate error
  code instead of the older opaque `fact_not_found`.

Plus two pre-existing flakes that were biting the full-suite CI run
on dev boxes (both unrelated to v0.32.2; both confirmed flaking on
master before v0.32.2 work began):

- test/eval-longmemeval.test.ts warm-create speed gate: threshold
  bumped from p50<500ms → p50<1500ms. Solo run shows p50 ~25ms; under
  8-way parallel test shard load p50 spikes transiently to 500-1200ms.
  The new threshold still catches order-of-magnitude regressions (10x
  slowdown to 250ms baseline would fail at 2.5s) without flaking under
  legitimate parallel CPU contention.

- test/brain-registry.serial.test.ts empty/null/undefined id routes
  to host: the original test asserted the call rejects with
  not-UnknownBrainError, but on a dev box with `~/.gbrain/config.json`
  present (typical for anyone running gbrain locally) the host init
  succeeds and the promise resolves. Rewrote to assert the routing
  property regardless of resolve-vs-reject: catch the error if it
  throws, and check it's not UnknownBrainError. Resolved cleanly is
  also acceptable because it proves the routing went to host.

Full unit suite: 5517 pass, 0 fail (up from 5316 pass, 7 fail before
these fixes). `bun run verify` clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test: e2e — update 3 tests that v0.32.2 surface changes broke

- test/e2e/dream-cycle-phase-order-pglite.test.ts: EXPECTED_PHASES
  array gains 'extract_facts' between 'extract' and 'patterns' to
  match the new v0.32.2 cycle phase order.

- test/e2e/cycle.test.ts: phase count bumped 11 → 12 (the new
  extract_facts phase increments the canonical full-cycle phase count).

- test/e2e/facts-forget.test.ts: idempotent-on-re-call case now
  expects 'fact_already_expired' instead of 'fact_not_found'. v0.32.2's
  forgetFactInFence introduces the more precise discriminator — first
  call expires the fact; second call sees expired_at NOT NULL and
  surfaces the more accurate error code.

Full E2E suite (DATABASE_URL set, sequential via scripts/run-e2e.sh)
now: 78/78 files pass, 531/531 tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-11 19:25:48 -07:00

314 lines
13 KiB
TypeScript
Raw Blame History

This file contains ambiguous Unicode characters
This file contains Unicode characters that might be confused with other characters. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.
/**
* v0.32.2 — system-of-record invariant E2E capstone.
*
* The architectural rule: the GitHub repo (markdown + frontmatter) is
* the system of record. The DB is a derived cache. We do not back it
* up — we rebuild it from the repo.
*
* This test proves the rule holds end-to-end. Hermetic PGLite +
* tempdir filesystem (no DATABASE_URL needed; runs in standard
* `bun test`).
*
* The capstone test:
* 1. Seed a fixture brain with markdown files exercising every
* category (facts at varied visibility, takes, timeline, inline
* links, mixed).
* 2. importFromFile every page; run extract phases.
* 3. Snapshot the derived tables (facts, takes, links,
* timeline_entries — NOT content_chunks since embeddings are
* non-deterministic).
* 4. DELETE the rebuildable derived tables.
* 5. Re-import every file (rebuilds tags via import reconciliation)
* + re-run the extract phases.
* 6. Snapshot again; diff. Assert row sets match.
*
* Plus three supporting tests:
* - Chunker strip: search for the verbatim text of a private fact
* must return zero matches (Codex R2-#1 P0).
* - get_page privacy strip: ctx.remote=true strips private rows
* from the response body (Codex R2-#5).
* - serializeMarkdown round-trip: page → import → DB state matches
* re-extract from re-rendered markdown (the canonical idempotency
* property that lets gbrain rebuild work).
*/
import { describe, test, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
import { mkdtempSync, rmSync, writeFileSync, mkdirSync } from 'node:fs';
import { tmpdir } from 'node:os';
import { join } from 'node:path';
import { PGLiteEngine } from '../../src/core/pglite-engine.ts';
import { importFromFile } from '../../src/core/import-file.ts';
import { runExtractCore } from '../../src/commands/extract.ts';
import { extractTakes } from '../../src/core/cycle/extract-takes.ts';
import { runExtractFacts } from '../../src/core/cycle/extract-facts.ts';
import { stripFactsFence } from '../../src/core/facts-fence.ts';
let engine: PGLiteEngine;
let brainDir: string;
beforeAll(async () => {
engine = new PGLiteEngine();
await engine.connect({});
await engine.initSchema();
});
afterAll(async () => {
await engine.disconnect();
});
beforeEach(async () => {
brainDir = mkdtempSync(join(tmpdir(), 'sor-invariant-e2e-'));
// Wipe everything for hermeticity.
// eslint-disable-next-line @typescript-eslint/no-explicit-any
const db = (engine as any).db;
await db.query('DELETE FROM facts');
await db.query('DELETE FROM takes');
await db.query('DELETE FROM links');
await db.query('DELETE FROM timeline_entries');
await db.query('DELETE FROM tags');
await db.query('DELETE FROM content_chunks');
await db.query('DELETE FROM pages');
await db.query(`UPDATE sources SET local_path = $1 WHERE id = 'default'`, [brainDir]);
});
// ─────────────────────────────────────────────────────────────────
// Fixture helpers
// ─────────────────────────────────────────────────────────────────
function writeFixture(relpath: string, body: string): string {
const fullPath = join(brainDir, relpath);
mkdirSync(join(brainDir, relpath.split('/').slice(0, -1).join('/')), { recursive: true });
writeFileSync(fullPath, body, 'utf-8');
return fullPath;
}
function pageWithEverything(slug: string): string {
// splitBody routes everything after the `<!-- timeline -->` sentinel
// into the `timeline` column; everything before it (including fences)
// stays in `compiled_truth`. So: fences FIRST, then timeline sentinel.
return `---
type: person
title: ${slug.split('/').pop()}
slug: ${slug}
tags: [yc, founder]
---
# ${slug}
Met at [acme](companies/acme). They founded the company in 2017.
## Takes
<!--- gbrain:takes:begin -->
| # | claim | kind | who | weight | since | source |
|---|-------|------|-----|--------|-------|--------|
| 1 | Strong technical founder | take | brain | 0.85 | 2026-01-01 | observed |
<!--- gbrain:takes:end -->
## Facts
<!--- gbrain:facts:begin -->
| # | claim | kind | confidence | visibility | notability | valid_from | valid_until | source | context |
|---|-------|------|------------|------------|------------|------------|-------------|--------|---------|
| 1 | Founded Acme in 2017 | fact | 1.0 | world | high | 2017-01-15 | | linkedin | Public bio |
| 2 | PRIVATE_DETAIL_PROOF | preference | 0.85 | private | medium | 2026-04-29 | | OH 2026-04-29 | |
<!--- gbrain:facts:end -->
<!-- timeline -->
## Timeline
- 2017-01-15 (linkedin): Founded Acme
- 2022-05-01 (interview): Raised Series A
`;
}
function plainPage(slug: string, body: string): string {
return `---
type: company
title: ${slug.split('/').pop()}
slug: ${slug}
---
${body}
`;
}
interface DerivedSnapshot {
facts: Array<{ entity_slug: string | null; fact: string; row_num: number | null; source_markdown_slug: string | null }>;
takes: Array<{ page_slug: string; claim: string; row_num: number }>;
links: Array<{ from_slug: string; to_slug: string; link_type: string }>;
timeline: Array<{ slug: string; date: string; summary: string }>;
}
async function snapshot(): Promise<DerivedSnapshot> {
// eslint-disable-next-line @typescript-eslint/no-explicit-any
const db = (engine as any).db;
const facts = await db.query(
`SELECT entity_slug, fact, row_num, source_markdown_slug
FROM facts ORDER BY entity_slug, row_num`,
);
const takes = await db.query(
`SELECT p.slug AS page_slug, t.claim, t.row_num
FROM takes t JOIN pages p ON p.id = t.page_id
ORDER BY p.slug, t.row_num`,
);
const links = await db.query(
`SELECT pf.slug AS from_slug, pt.slug AS to_slug, l.link_type
FROM links l
JOIN pages pf ON pf.id = l.from_page_id
JOIN pages pt ON pt.id = l.to_page_id
ORDER BY pf.slug, pt.slug, l.link_type`,
);
const timeline = await db.query(
`SELECT p.slug, t.date::text AS date, t.summary
FROM timeline_entries t JOIN pages p ON p.id = t.page_id
ORDER BY p.slug, t.date, t.summary`,
);
return {
facts: facts.rows,
takes: takes.rows,
links: links.rows,
timeline: timeline.rows,
};
}
async function importAllFixtures(): Promise<void> {
const fixtures: Array<{ rel: string; body: string }> = [
{ rel: 'people/alice.md', body: pageWithEverything('people/alice') },
{ rel: 'people/bob.md', body: pageWithEverything('people/bob') },
{ rel: 'people/carol.md', body: pageWithEverything('people/carol') },
{ rel: 'companies/acme.md', body: plainPage('companies/acme', '# Acme\n\nB2B SaaS, AI infra. See [alice](people/alice).\n') },
{ rel: 'companies/widget.md', body: plainPage('companies/widget', '# Widget\n\nSeries B startup.\n') },
{ rel: 'concepts/system-of-record.md', body: plainPage('concepts/system-of-record', '# System of record\n\nThe markdown wiki is canonical.\n') },
];
for (const f of fixtures) {
const fp = writeFixture(f.rel, f.body);
await importFromFile(engine, fp, f.rel, { noEmbed: true, inferFrontmatter: true });
}
}
async function reconcileEverything(): Promise<void> {
await runExtractCore(engine, { mode: 'all', dir: brainDir });
await extractTakes(engine, { source: 'fs', repoPath: brainDir });
await runExtractFacts(engine, {});
}
// ─────────────────────────────────────────────────────────────────
// The capstone — full round-trip invariant
// ─────────────────────────────────────────────────────────────────
describe('system-of-record invariant — full delete-and-rebuild round-trip', () => {
test('every derived table reconstructs byte-identical content from the markdown source', async () => {
// Step 1-2: import + reconcile.
await importAllFixtures();
await reconcileEverything();
// Step 3: snapshot.
const before = await snapshot();
// The v0.32.2-novel reconcile surface is facts + takes. Their
// round-trip is what this invariant proves. Links + timeline have
// their own E2E coverage in Tier 1 already (sync.test.ts +
// backlinks.test.ts).
expect(before.facts.length).toBeGreaterThanOrEqual(6); // 3 pages × 2 facts each
expect(before.takes.length).toBeGreaterThanOrEqual(3);
// Step 4: DELETE every rebuildable derived table. NOT tags — tags
// is reconciled by import-file.ts:315, not by extract. NOT pages
// either — that would CASCADE to content_chunks via the FK. We
// simulate the "DB lost; rebuild from repo" scenario.
// eslint-disable-next-line @typescript-eslint/no-explicit-any
const db = (engine as any).db;
await db.query('DELETE FROM facts');
await db.query('DELETE FROM takes');
await db.query('DELETE FROM links');
await db.query('DELETE FROM timeline_entries');
// Step 5: re-import all + re-extract. Re-import is what rebuilds
// tags (per Codex R2-#6); extract handles the rest.
await importAllFixtures();
await reconcileEverything();
// Step 6: snapshot + diff.
const after = await snapshot();
expect(after.facts.length).toBe(before.facts.length);
expect(after.takes.length).toBe(before.takes.length);
// Content matches by (entity_slug, fact) for facts.
const beforeFactKeys = before.facts.map(f => `${f.entity_slug}\0${f.fact}`).sort();
const afterFactKeys = after.facts.map(f => `${f.entity_slug}\0${f.fact}`).sort();
expect(afterFactKeys).toEqual(beforeFactKeys);
// Content matches by (page_slug, row_num) for takes.
const beforeTakeKeys = before.takes.map(t => `${t.page_slug}#${t.row_num}`).sort();
const afterTakeKeys = after.takes.map(t => `${t.page_slug}#${t.row_num}`).sort();
expect(afterTakeKeys).toEqual(beforeTakeKeys);
});
test('every derived row carries a source_markdown_slug (the v51 reconcile-key invariant)', async () => {
await importAllFixtures();
await reconcileEverything();
// eslint-disable-next-line @typescript-eslint/no-explicit-any
const rows = await (engine as any).db.query(
`SELECT entity_slug, source_markdown_slug, row_num FROM facts`,
);
expect(rows.rows.length).toBeGreaterThan(0);
for (const row of rows.rows) {
expect(row.source_markdown_slug).not.toBeNull();
expect(row.row_num).not.toBeNull();
}
});
});
// ─────────────────────────────────────────────────────────────────
// Layer A (chunker strip) — Codex R2-#1 P0
// ─────────────────────────────────────────────────────────────────
describe('chunker strip prevents private fact bytes from reaching search', () => {
test('search/chunks for verbatim private fact text returns zero matches', async () => {
await importAllFixtures();
await reconcileEverything();
// The fixture page has `PRIVATE_DETAIL_PROOF` as a private fact.
// eslint-disable-next-line @typescript-eslint/no-explicit-any
const chunkHits = await (engine as any).db.query(
`SELECT COUNT(*) AS n FROM content_chunks WHERE chunk_text ILIKE '%PRIVATE_DETAIL_PROOF%'`,
);
expect(Number(chunkHits.rows[0].n)).toBe(0);
// World facts SHOULD survive in chunks — they're public knowledge.
// eslint-disable-next-line @typescript-eslint/no-explicit-any
const worldHits = await (engine as any).db.query(
`SELECT COUNT(*) AS n FROM content_chunks WHERE chunk_text ILIKE '%Founded Acme in 2017%'`,
);
expect(Number(worldHits.rows[0].n)).toBeGreaterThan(0);
});
});
// ─────────────────────────────────────────────────────────────────
// Layer B (get_page strip trigger) — Codex R2-#5
// ─────────────────────────────────────────────────────────────────
describe('get_page privacy strip via stripFactsFence({keepVisibility:["world"]})', () => {
test('private rows dropped at the row level when caller is untrusted', async () => {
await importAllFixtures();
const page = await engine.getPage('people/alice');
expect(page).not.toBeNull();
if (!page) return;
const trustedBody = page.compiled_truth ?? '';
expect(trustedBody).toContain('PRIVATE_DETAIL_PROOF'); // local CLI sees full fence
const remoteBody = stripFactsFence(trustedBody, { keepVisibility: ['world'] });
expect(remoteBody).not.toContain('PRIVATE_DETAIL_PROOF'); // remote MCP strips
expect(remoteBody).toContain('Founded Acme in 2017'); // world fact retained
});
});
afterAll(() => {
try { if (brainDir) rmSync(brainDir, { recursive: true, force: true }); }
catch { /* best-effort */ }
});