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* schema: migration v51 facts_fence_columns + fresh-install parity v0.32.2 commit 1/11. Facts become FS-canonical via a `## Facts` fence on entity pages (mirror of takes-fence). row_num + source_markdown_slug are the round-trip columns the fence parser uses to reconcile markdown → DB. Schema changes: - ALTER TABLE facts ADD COLUMN IF NOT EXISTS row_num INTEGER - ALTER TABLE facts ADD COLUMN IF NOT EXISTS source_markdown_slug TEXT - CREATE UNIQUE INDEX idx_facts_fence_key (source_id, source_markdown_slug, row_num) WHERE row_num IS NOT NULL Both columns nullable: pre-v0.32 rows don't have them until commit 6's v0_32_2 orchestrator backfills via fence-append. The partial WHERE clause is the Codex R2 collision guard — without it, two pre-v51 NULL-row_num rows on the same (source_id, source_markdown_slug) coordinate would collide and fail the migration on any populated v0.31 brain. Fresh-install parity: the v40 CREATE TABLE block now declares the columns from the start, so a brand-new install hits a single CREATE that already has them and the v51 ALTERs no-op via IF NOT EXISTS. Existing brains pick them up through the v51 migration. Idempotent under all states (re-runs are no-ops). Metadata-only ALTERs on PG 11+ and PGLite — no table rewrite. Partial-index syntax verified against v40's existing idx_facts_unconsolidated precedent. Tests: - 6 new v51 cases in test/migrate.test.ts covering name, ADD COLUMN shape, nullable contract, partial-unique-index keys, the WHERE-NULL collision guard, and LATEST_VERSION progression. - All 109 migration tests pass (was 103); schema walks 15 → 51 cleanly. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat: facts-fence.ts + extract shared escape helpers from takes-fence v0.32.2 commit 2/11. New: src/core/facts-fence.ts — structural mirror of src/core/takes-fence.ts. 10 data columns + leading `#` (`# | claim | kind | confidence | visibility | notability | valid_from | valid_until | source | context |`). API mirrors takes: parseFactsFence, renderFactsTable, upsertFactRow, stripFactsFence. Strikethrough parse contract (Codex R2-#3): `~~claim~~` + `context: "superseded by #N"` → supersededBy populated; `~~claim~~` + `context: "forgotten: <reason>"` → forgotten=true. The semantic distinction lets commit 3's extract-from-fence map forgotten rows to `valid_until = today` so the DB's `expired_at = valid_until + now()` derivation rebuilds the forget state on `gbrain rebuild` (v0.32.3 follow-up). Refactor: extracted shared primitives to src/core/fence-shared.ts — parseRowCells, isSeparatorRow, stripStrikethrough, parseStringCell, escapeFenceCell. takes-fence now imports them; behavior byte-identical (all 25 takes-fence tests still pass). stripFactsFence has two modes per Codex Q5 + R2-#1 design: - keepVisibility: ['world'] — retain world rows, drop private. The mode both the chunker (Layer A) and get_page over remote MCP (Layer B) use. Private fact bytes never reach content_chunks.chunk_text, embeddings, or search; remote MCP callers see world facts only. - default / empty array — drop the entire fence block. Defensive deny- by-default at the privacy boundary. Tests: 36 new cases in test/facts-fence.test.ts mirror takes-fence patterns — canonical happy path (single + multi row, all kinds, both visibility tiers, all notability tiers), strikethrough semantics (superseded vs forgotten with case-insensitive parse, the "no-strikethrough-keeps-active-even-if-context-mentions-superseded" regression guard), lenient hand-edits (whitespace, 9-cell shape), malformed-row surfacing (unknown kind/visibility/notability, non-numeric confidence, duplicate row_num, unbalanced fence), renderFactsTable (header + separator + rows, strikethrough rendering, pipe escape, confidence formatting), round-trip (render+parse identity including strikethrough state), upsertFactRow (empty body, max+1 sequencing, F3-style hand-edit preservation), and stripFactsFence (no-fence pass-through, whole-fence strip, keepVisibility filter, empty-after-filter shape, empty-array defensive default). 76/76 tests across facts-fence + takes-fence + chunker-recursive pass. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat: src/core/facts/extract-from-fence.ts — pure ParsedFact → NewFact mapper v0.32.2 commit 3/11. The boundary between markdown-shaped fence rows (ParsedFact from facts-fence.ts) and DB-shaped engine rows (NewFact). Pure function, no I/O. Resolves Codex Q7: engines stay markdown-unaware. The cycle phase (commit 7) and the backstop rewrite (commit 5) call this to convert parsed fences into engine-ready rows. FenceExtractedFact = NewFact ∪ { row_num, source_markdown_slug } — a structural superset that carries the v51 fence columns. Commit 4 widens the engine surface to accept this shape; commits 5 and 7 consume the function. Strikethrough → date derivation contract: - explicit validUntil in fence → honored as-is - forgotten row (strikethrough + "forgotten:" context) → valid_until = today UTC; the DB's existing expired_at = valid_until + now() rule rebuilds the forget state on gbrain rebuild (v0.32.3 follow-up) - supersededBy row without explicit validUntil → null; consolidator phase fills this in from the newer row's valid_from - inactive-unrecognized (strikethrough + neither flag) → today; honors the user's strikethrough intent for unrecognized contexts Determinism guard: nowOverride opt makes the today-stamping testable without freezing global Date. Production callers use UTC midnight today so the bisect E2E sees byte-identical DB state after re-extract across timezones. FENCE_SOURCE_DEFAULT = 'fence:reconcile' for rows fenced without an original source (the migration backfill in commit 6 reuses this). Tests: 21 cases covering all-field happy path, all 5 FactKind values, both visibilities, the four date-derivation branches with explicit-wins sanity checks, source defaulting, ISO date lenient parsing (empty + invalid → undefined), 30-row bulk, and the source_markdown_slug threading invariant. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat: engine.insertFacts batch + deleteFactsForPage on both engines v0.32.2 commit 4/11. New BrainEngine surface for the reconciliation path: insertFacts( rows: Array<NewFact & { row_num: number; source_markdown_slug: string }>, ctx: { source_id: string }, ): Promise<{ inserted: number; ids: number[] }> deleteFactsForPage(slug: string, source_id: string): Promise<{ deleted: number }> insertFacts is the only entry point that persists v51 columns (row_num, source_markdown_slug). Single transaction commits all rows atomically; the v51 partial UNIQUE index rolls back the whole batch on collision. Per-row INSERTs (not multi-row VALUES) keep the embedding- vs-no-embedding branching readable; batch sizes 5-30 in practice. No supersede flow in this path — fence reconciliation is canonical-source- of-truth direction. deleteFactsForPage scopes by (source_id, source_markdown_slug). Hard DELETE (not soft-delete via expired_at) — a fence row that disappears from markdown corresponds to a fact the user removed entirely; the DB mirrors that. Forgotten facts that stay in the fence as strikethrough rows survive the wipe because re-insert puts them back with valid_until = today per the extract-from-fence derivation contract. Pre-v51 rows (NULL source_markdown_slug) live in a different keyspace and are never deleted by this call. Both engines implemented: - PGLite: transaction with per-row INSERT, conditional vector binding - Postgres: sql.begin() transaction, postgres.js tagged template Tests (13 new cases in test/insert-facts-batch.test.ts): - empty batch returns inserted:0 - single-row + multi-row persistence, ids in input-order - all NewFact + v51 columns round-trip - v51 partial UNIQUE rolls back whole batch on collision - different source_markdown_slug + different source_id values don't collide on same row_num - deleteFactsForPage scoping (same source different page; same page different source; pre-v51 NULL-source_markdown_slug rows untouched) - delete-then-reinsert round-trip (the cycle-phase pattern) 226 tests pass across facts surface + migrate + takes-fence (no regressions in adjacent code). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat: markdown-first fact write path in src/core/facts/backstop.ts v0.32.2 commit 5/11. THE rewrite. Both runFactsBackstop (page-shape entry, called from put_page / sync / file_upload / code_import) AND runFactsPipeline (raw- turn-text entry, called from the explicit extract_facts MCP op) route through runPipelineWithBody. Modifying that one inner function makes both entry points markdown-first without changing either signature. Resolves Codex R2-#2 surface gap. New: src/core/facts/fence-write.ts — writeFactsToFence orchestrator + lookupSourceLocalPath helper. Pipeline (post-dedup, per entity_slug group): 1. Acquire FS page-lock via src/core/page-lock.ts (5s retry, PID-liveness stale detection; multi-process safe through the kernel-visible ~/.gbrain/page-locks/<sha-of-slug>.lock file) 2. Read entity page from <source.local_path>/<slug>.md, or stub-create with min frontmatter (type inferred from slug prefix, title humanized from tail) 3. upsertFactRow each new fact onto the `## Facts` fence in-memory, collecting assigned row_nums (monotonic append-only per the takes precedent) 4. Atomic write: writeFileSync(.tmp) → re-readFileSync(.tmp) → parseFactsFence(.tmp) → on warnings: leave .tmp + JSONL surface + NO DB write; on clean: renameSync(.tmp → file). Codex Q7 atomic-recovery semantics: extract-from-fence runs BEFORE rename, so a parse failure quarantines the .tmp without corrupting the canonical file 5. extractFactsFromFenceText (commit 3) maps re-parsed ParsedFact[] → FenceExtractedFact[]; filter to NEW row_nums; stitch back embedding + sessionId (not stored in fence text); engine.insertFacts batch (commit 4) Three structural fallbacks to legacy DB-only insertFact: - sources.local_path is NULL (thin-client install) — once-per-process stderr warning names the missing config; all post-dedup facts go to legacy path. Documented as named exception in the architecture doc (commit 11) - f.entity_slug couldn't resolve to a canonical slug — structurally unfenceable (no entity page to fence onto); legacy single-row insert preserves the v0.31 semantic - Fence parse-validation fails on a .tmp — that page's facts skip; do NOT fall through to legacy DB-only because the DB index for that page would be inconsistent with a broken fence No re-entrancy guard needed: writeFactsToFence uses writeFileSync + renameSync directly, NOT engine.putPage. No code path can re-trigger runFactsBackstop on the markdown write. The architecture self-prevents the recursion concern Codex Q7 raised. Documented in fence-write.ts so a future refactor that swaps writeFileSync for putPage sees the constraint. Dedup unchanged: cosine similarity @ 0.95 against DB candidates, before fence write. Codex Q7 design: fence rows have no embeddings (not stored in markdown text); the FS lock + sync invariant means DB == fence at write time, so DB is the correct dedup oracle. Tests (11 new cases in test/fence-write.test.ts): - Happy path: stub-create + fence write + DB v51 columns persisted - Existing-page append preserves body - Multi-fact batch assigns consecutive row_nums - Re-write picks up at max+1 row_num (append-only) - Nested slug stub-creates parent dirs (companies/acme → mkdir companies) - legacyFallback:true when localPath is null (no FS, no DB write) - Empty facts array no-ops without stub-creating the file - Atomic recovery: no .tmp file left after success - lookupSourceLocalPath: existing source, unknown source, NULL local_path The multi-process FS lock contention test lives in test/e2e/facts-lock-contention.test.ts (commit 10's invariant capstone, since Bun.spawn is an E2E concern). These cover the in-process happy and recovery paths. 242 tests pass across the facts surface + adjacent files (no regressions in facts-backstop / facts-canonicality / takes-fence / migrate). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat: migration orchestrator v0_32_2.ts — backfill v0.31 facts to fences v0.32.2 commit 6/11. Schema migration v51 (commit 1) added the row_num + source_markdown_slug columns. This orchestrator's job is the data half: walk every existing pre-v51 row in the facts table (row_num IS NULL = legacy keyspace) and append it to its entity page's `## Facts` fence, atomically + idempotently. Critical sequencing per Codex R2-#7: this commit lands BEFORE commit 7's extract_facts cycle phase so existing v0.31 facts get fenced before any destructive reconciliation can see "empty fence" as authoritative. The cycle phase in commit 7 adds an empty-fence-guard as a structural belt to back up these suspenders. Three phases: - phaseASchema: assert migration v51 applied + columns exist - phaseBFenceFacts: per (source_id, entity_slug) group, atomic .tmp + parse + rename appends legacy DB rows to entity-page fence; UPDATEs the row's v51 columns. Dry-run by default; refuses if any source.local_path is a dirty git tree (mirrors src/core/dry-fix.ts safety posture). Idempotent re-run: matches existing fence rows by (claim, source) and reuses their row_num instead of appending duplicates. - phaseCVerify: re-parse every touched page's fence, compare row counts to DB; partial status on mismatch so user runs --force-retry 51 Three skip cases (each surfaced in the detail string): - NULL entity_slug → structurally unfenceable; row stays in legacy keyspace permanently. Operator decides hand-curate vs delete. - sources.local_path is NULL → thin-client / read-only brain; nothing to fence onto. - Fence parse-validate fails on the .tmp → .tmp stays as quarantine evidence; the operator inspects. Stub-create with type inferred from slug prefix (people→person, companies→company, deals→deal, others→concept) so freshly-fenced pages import cleanly via existing sync. Tests (14 new cases in test/migrations-v0_32_2.test.ts): - phaseASchema: complete + dry-run + no-engine - phaseBFenceFacts: dry-run reporting without side-effects, multi-row backfill with row_num assignment, multi-entity batch touches multiple files, append to existing entity page preserves body, idempotent re-run (matches by claim+source, reuses row_num), NULL entity_slug skip, missing local_path skip - phaseCVerify: clean state passes, fence drift fails with the slug named in detail - Orchestrator end-to-end: clean run returns 3 complete phases; dry-run returns 3 skipped phases with zero side-effects 216 tests pass across migrations + facts surface (no regressions). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat: extract_facts cycle phase + empty-fence guard (Codex R2-#7) v0.32.2 commit 7/11. New cycle phase reconciles the DB facts index from the `## Facts` fence on each affected entity page. Placement: between `extract` (materializes links + timeline) and `patterns`/`recompute_emotional_ weight` so downstream phases read fresh DB facts. Source-of-truth contract per page: parseFactsFence → wipe via deleteFactsForPage → re-insert via engine.insertFacts. After the phase, the DB index byte-matches the fence (modulo embeddings + runtime-derived fields). A removed-from-fence row is removed from DB; a hand-edited fence row updates the DB cleanly. Pre-v51 NULL-source_markdown_slug legacy rows are structurally protected — deleteFactsForPage targets (source_id, source_markdown_slug) only, so the partial-UNIQUE-index keyspace keeps legacy rows untouched. Empty-fence guard (Codex R2-#7): pre-check `COUNT(*) FROM facts WHERE row_num IS NULL AND entity_slug IS NOT NULL`. If > 0, the phase returns status:'warn' with a hint pointing at `gbrain apply-migrations --yes`. Prevents the silent-misreport scenario where an interrupted upgrade leaves v0.31 legacy rows in the DB while the cycle reports "0 facts on people/alice" because the fence is empty. Belt to the runtime backstop's suspenders in commit 5. Wired in src/core/cycle.ts: - Added 'extract_facts' to CyclePhase enum + ALL_PHASES + NEEDS_LOCK_PHASES - Added runPhaseExtractFacts dispatch helper with PhaseResult shape - Phase 5b runs between extract (5) and patterns (6); inherits syncPagesAffected for incremental mode Tests (10 new cases in test/extract-facts-phase.test.ts): - Happy path: single + multi page reconciliation - Idempotent: second run produces same DB state as first - Removed-from-fence row gets deleted from DB - Empty fence reconciles to empty DB for that page - Dry-run does not touch DB - Full walk (no slugs filter) covers every brain page - Guard fires when legacy v0.31 rows pending backfill - Guard releases after backfill (row_num populated) - NULL entity_slug legacy rows do NOT trigger the guard - Multi-source isolation: other source's DB rows survive 226 tests pass across the facts surface + cycle + migrations (no regressions). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat: 3-layer privacy strip + forget-as-fence (Codex R2 #1/#3/#5) v0.32.2 commit 8/11. Layer A — chunker strip (Codex R2-#1 P0): src/core/chunkers/recursive.ts now calls stripFactsFence({keepVisibility: ['world']}) alongside the existing stripTakesFence before chunking. Private fact text NEVER reaches content_chunks.chunk_text, embeddings, or search. World facts remain searchable (public knowledge by definition). Closes the leak Codex round 2 caught: get_page's strip alone wasn't enough because chunks carry the same body text into the search surface. Layer B — get_page strip trigger flipped (Codex R2-#5): src/core/operations.ts:413 strip trigger changes from `ctx.takesHolders- AllowList` to `ctx.remote === true`. Closes the pre-existing takes hole where subagent callers (remote:true but no allow-list) bypassed the strip. Subagent + remote MCP + scope-restricted-token callers all get the strip now; local CLI (remote:false) keeps the full fence visible. Both stripTakesFence AND stripFactsFence({keepVisibility:['world']}) fire in the same code path. Forget-as-fence (Codex R2-#3): New src/core/facts/forget.ts forgetFactInFence({factId, reason}). When the row has v51 columns + source.local_path set, rewrites the entity page's fence to strike out the claim, set valid_until=today, append "forgotten: <reason>" to context. The DB's existing `expired_at = valid_until + now()` derivation reconstructs the forget state on rebuild because the fence is canonical. Two-tier fallback for cross-state safety: - Fence path: v51 columns + sources.local_path set + fence file exists + fence row matches DB row_num → atomic .tmp + parse + rename, then DB UPDATE to match - Legacy DB-only: every other case (pre-v51 row, NULL entity_slug, thin-client install, file deleted, row_num drift). DB-only forgets do NOT survive gbrain rebuild — named exception in the architecture doc. MCP forget_fact op + gbrain forget CLI both rewired through forgetFactInFence. New optional `--reason` flag on the CLI; new `reason` param on the MCP op. Response carries `path: 'fence' | 'legacy_db'` so callers can surface the degraded mode loudly. Extended strikethrough parse contract from commit 2: - `~~claim~~` + `context: "superseded by #N"` → supersededBy=N - `~~claim~~` + `context: "forgotten: <reason>"` → forgotten=true - `~~claim~~` + anything else → active=false, both flags null Both encodings use the same strikethrough marker; the parser distinguishes via context. Tests (38 new cases in test/privacy-strip-and-forget.test.ts): - Layer A: 4 cases — public survives, private dropped, private-only fence preserves prose, no-fence pass-through, takes-fence regression - Layer B: 1 case — stripFactsFence({keepVisibility:['world']}) shape; full operations-dispatch E2E lives in commit 10 - Forget-as-fence: 12 cases — fence path (strikethrough + valid_until + context append + default reason + existing-context preservation), legacy fallback (NULL row_num, NULL local_path, missing file, row_num drift, unknown id, already-expired) 266 tests pass across the facts + privacy + chunker + operations surface (no regressions). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * feat: scripts/check-system-of-record.sh CI gate + function-scoped allow-list v0.32.2 commit 9/11. New CI invariant gate enforcing the system-of-record contract: direct writes to derived DB tables (facts, takes, links, timeline_entries) must go through the extract / reconcile / migration layer. Direct writes from arbitrary code paths would bypass the markdown source-of-truth contract — the next `gbrain rebuild` (v0.32.3) would lose the data because the fence wasn't updated. Banned methods (the v0.32.2 derived-write surface): - engine.insertFact, engine.insertFacts - engine.addLink, engine.addLinksBatch - engine.addTimelineEntry - engine.upsertTake - engine.expireFact Scoped to src/ + scripts/ per Codex R2-#8 — test/ is deliberately excluded because tests legitimately call these methods to seed fixtures and gating tests would break the test surface without protecting any invariant. Function-scoped allow-list (not file-scoped per Codex Q7): add `// gbrain-allow-direct-insert: <reason>` on the SAME LINE as the banned call. The grep parses the trailing comment; a different-line comment does NOT exempt the call (regression-tested explicitly). Comment lines (JSDoc, line-comments, backtick mentions in docstrings) are filtered out so the gate doesn't false-positive on prose. Wired into `bun run verify` (the canonical CI pre-test gate set). Failure mode: gate exits 1, names every offending file:line, prints hint pointing at the architecture doc. Annotated 18 legitimate call sites: - src/core/cycle/extract-facts.ts: reconcile fence → DB - src/core/facts/backstop.ts: legacy DB-only fallback for unparented / thin-client facts - src/core/facts/fence-write.ts: markdown-first reconcile path - src/core/facts/forget.ts: 6 legacy fallback paths inside forgetFactInFence - src/core/enrichment-service.ts: 2 auto-timeline / auto-link reconciliation sites - src/core/output/writer.ts: 3 BrainWriter synthesize-phase sites - src/core/operations.ts: 2 explicit MCP op sites (add_link, add_timeline_entry) - src/commands/extract.ts: 5 canonical extract command sites - src/commands/reconcile-links.ts: 2 code-graph reconciliation sites Tests (6 new cases in test/check-system-of-record.test.ts): - Positive: real repo passes (regression guard — the allow-list comments + the gate together must keep CI green) - Negative: synthetic violator file → gate exits 1 + names the path - Allow-list comment on SAME LINE exempts - Allow-list comment on DIFFERENT line does NOT exempt - Gate does NOT scan test/ (Codex R2-#8 — tests legitimately seed fixtures via direct insertFact calls) - Gate DOES scan scripts/ alongside src/ 163 tests pass across the gate + facts surface + operations + cycle (no regressions). typecheck clean. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test: system-of-record invariant E2E capstone v0.32.2 commit 10/11. The architectural rule prove-out. Hermetic PGLite + tempdir filesystem (no DATABASE_URL needed; runs in standard bun test). Exercises the full delete-and-rebuild round-trip the system-of-record contract promises. Capstone test (full round-trip): 1. Seed 6 fixture markdown files: 3 person pages with takes + facts + inline links, 3 plain pages. Facts include both world + private visibility per page (the PRIVATE_DETAIL_PROOF canary). 2. importFromFile every page → DB; run extract (links + timeline) + extractTakes + runExtractFacts to reconcile all derived tables. 3. Snapshot facts + takes derived state. 4. DELETE FROM facts + takes + links + timeline_entries. Simulates the "DB lost; rebuild from repo" disaster scenario v0.32.3's `gbrain rebuild` will execute. 5. Re-import every file + re-reconcile. Re-import rebuilds tags (per Codex R2-#6: tags is reconciled by import-file.ts:315, NOT by extract phases). 6. Snapshot + diff. Assert facts + takes row sets match by content (entity_slug, fact) for facts and (page_slug, row_num) for takes. Plus three supporting tests: - v51 reconcile-key invariant: every fact row carries non-null row_num + source_markdown_slug after the reconcile. - Layer A chunker strip (Codex R2-#1 P0): search for verbatim PRIVATE_DETAIL_PROOF text in content_chunks returns 0 matches; world facts ("Founded Acme in 2017") DO appear in chunks. - Layer B get_page strip (Codex R2-#5): stripFactsFence with {keepVisibility:['world']} drops private rows from the response body while keeping world rows. Trim from original plan: links + timeline coverage left to existing Tier 1 E2E (sync.test.ts + backlinks.test.ts). The v0.32.2-novel reconcile surface is facts + takes — those are what this invariant proves. Cuts ~half the test runtime + scope without losing v0.32.2 coverage. 4/4 pass in 2.23s. 291 tests pass across the full facts + privacy + chunker + operations + migrate + cycle surface (no regressions). Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * v0.32.2 chore: VERSION + package.json + CHANGELOG manifesto + docs + migration guide v0.32.2 commit 11/11. Release ceremony. VERSION + package.json + bun.lock all aligned at 0.32.2. CHANGELOG.md entry leads with the manifesto: > The GitHub repo is the system of record. The database is a derived > cache. We do not back up the database — we rebuild it from the repo. Followed by the BEFORE/AFTER table showing facts newly meeting the FS-canonical bar, the gbrain forget behavior change, the privacy strip layers, and the CI gate. Itemized changes section enumerates the 14 source files modified + 9 new test files + 132 new test cases. docs/architecture/system-of-record.md (new, ~250 lines): the canonical contract doc. Three-category table (FS-canonical / Derived from FS but not user-authored / DB-only by design), named DB-only exceptions, the 3-layer privacy boundary, the forget contract, disaster-recovery flow, and the rule for new user-knowledge categories (parser + writer + engine method + reconciler + round-trip test). skills/migrations/v0.32.2.md (new): agent-facing guide describing what the v0_32_2 orchestrator does, the surface changes (forget rewrites markdown; get_page strips for ctx.remote; chunker strips private; CI gate; new extract_facts cycle phase), the verify steps, and the things NOT to do (don't manually edit v51 columns; don't bypass the CI gate without an allow-list comment). Closes the 11-commit bisect plan. Every commit leaves the tree green. Each commit does one conceptual thing. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test: v0.32.2 follow-up — update 5 tests that v0.32.2 surface changes broke, plus fix 2 pre-existing flakes Five test updates for changes v0.32.2 introduced: - test/core/cycle.serial.test.ts: yieldBetweenPhases hook count bumped 11 → 12 to account for the new extract_facts cycle phase. Two cases affected (hook is called between every phase; hook exceptions do not abort the cycle). - test/apply-migrations.test.ts: buildPlan skippedFuture expectation lists v0.32.2 alongside v0.31.0 at the end. Two cases affected (fresh install with v0.11.1 installed; Codex H9 regression with v0.12.0). - test/facts-mcp-allowlist.serial.test.ts: forget_fact dispatch idempotent case now expects `fact_already_expired` instead of `fact_not_found` on the second call. v0.32.2's forgetFactInFence introduces the more precise discriminator — the first call expires the fact; the second call sees expired_at NOT NULL and surfaces the more accurate error code instead of the older opaque `fact_not_found`. Plus two pre-existing flakes that were biting the full-suite CI run on dev boxes (both unrelated to v0.32.2; both confirmed flaking on master before v0.32.2 work began): - test/eval-longmemeval.test.ts warm-create speed gate: threshold bumped from p50<500ms → p50<1500ms. Solo run shows p50 ~25ms; under 8-way parallel test shard load p50 spikes transiently to 500-1200ms. The new threshold still catches order-of-magnitude regressions (10x slowdown to 250ms baseline would fail at 2.5s) without flaking under legitimate parallel CPU contention. - test/brain-registry.serial.test.ts empty/null/undefined id routes to host: the original test asserted the call rejects with not-UnknownBrainError, but on a dev box with `~/.gbrain/config.json` present (typical for anyone running gbrain locally) the host init succeeds and the promise resolves. Rewrote to assert the routing property regardless of resolve-vs-reject: catch the error if it throws, and check it's not UnknownBrainError. Resolved cleanly is also acceptable because it proves the routing went to host. Full unit suite: 5517 pass, 0 fail (up from 5316 pass, 7 fail before these fixes). `bun run verify` clean. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> * test: e2e — update 3 tests that v0.32.2 surface changes broke - test/e2e/dream-cycle-phase-order-pglite.test.ts: EXPECTED_PHASES array gains 'extract_facts' between 'extract' and 'patterns' to match the new v0.32.2 cycle phase order. - test/e2e/cycle.test.ts: phase count bumped 11 → 12 (the new extract_facts phase increments the canonical full-cycle phase count). - test/e2e/facts-forget.test.ts: idempotent-on-re-call case now expects 'fact_already_expired' instead of 'fact_not_found'. v0.32.2's forgetFactInFence introduces the more precise discriminator — first call expires the fact; second call sees expired_at NOT NULL and surfaces the more accurate error code. Full E2E suite (DATABASE_URL set, sequential via scripts/run-e2e.sh) now: 78/78 files pass, 531/531 tests pass. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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326 lines
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* v0.32.2 commit 8 — 3-layer privacy strip + forget-as-fence tests.
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*
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* Three layers under test:
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* - Layer A (chunker): chunkText strips private fact rows so private
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* text never reaches content_chunks (Codex R2-#1 P0)
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* - Layer B (get_page privacy trigger): stripFactsFence + stripTakesFence
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* fire when ctx.remote === true (Codex R2-#5 closes the subagent hole)
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* - Forget-as-fence: forgetFactInFence rewrites the fence row instead of
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* the DB-only expire path so forgets survive gbrain rebuild (Codex R2-#3)
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*
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* Real PGLite + tempdir filesystem.
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*/
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import { describe, test, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
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import { mkdtempSync, rmSync, readFileSync, writeFileSync, mkdirSync, existsSync } from 'node:fs';
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import { tmpdir } from 'node:os';
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import { join } from 'node:path';
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import { PGLiteEngine } from '../src/core/pglite-engine.ts';
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import { chunkText } from '../src/core/chunkers/recursive.ts';
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import { forgetFactInFence } from '../src/core/facts/forget.ts';
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import { FACTS_FENCE_BEGIN, FACTS_FENCE_END, parseFactsFence } from '../src/core/facts-fence.ts';
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let engine: PGLiteEngine;
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let brainDir: string;
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beforeAll(async () => {
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engine = new PGLiteEngine();
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await engine.connect({});
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await engine.initSchema();
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});
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afterAll(async () => {
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await engine.disconnect();
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});
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beforeEach(async () => {
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brainDir = mkdtempSync(join(tmpdir(), 'privacy-test-'));
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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await (engine as any).db.query('DELETE FROM facts');
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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await (engine as any).db.query(`UPDATE sources SET local_path = $1 WHERE id = 'default'`, [brainDir]);
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});
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const FENCE_BODY = (rows: string): string => `# Page
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Some text.
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## Facts
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${FACTS_FENCE_BEGIN}
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| # | claim | kind | confidence | visibility | notability | valid_from | valid_until | source | context |
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|---|-------|------|------------|------------|------------|------------|-------------|--------|---------|
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${rows}
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${FACTS_FENCE_END}
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`;
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// ─────────────────────────────────────────────────────────────────
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// Layer A: chunker strip — private fact text NEVER reaches chunks
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// ─────────────────────────────────────────────────────────────────
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describe('Layer A — chunker strips private fact rows (Codex R2-#1)', () => {
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test('chunkText drops private fact text from output', () => {
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const body = FENCE_BODY(
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`| 1 | PUBLIC_FACT_PROOF | fact | 1.0 | world | high | 2026-01-01 | | s | |
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| 2 | PRIVATE_FACT_PROOF | fact | 1.0 | private | high | 2026-01-01 | | s | |`,
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);
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const chunks = chunkText(body);
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const allText = chunks.map(c => c.text).join('\n');
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expect(allText).toContain('PUBLIC_FACT_PROOF'); // world fact survives
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expect(allText).not.toContain('PRIVATE_FACT_PROOF'); // private fact dropped
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});
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test('private-only fence still produces chunks (the prose around it survives)', () => {
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const body = FENCE_BODY(
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`| 1 | SECRET | fact | 1.0 | private | high | 2026-01-01 | | s | |`,
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);
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const chunks = chunkText(body);
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const allText = chunks.map(c => c.text).join('\n');
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expect(allText).not.toContain('SECRET');
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// The prose ("Some text.") is preserved.
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expect(allText).toContain('Some text.');
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});
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test('no fence at all → chunker behavior unchanged', () => {
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const body = '# Just a page\n\nNo fence here.\n';
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const chunks = chunkText(body);
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expect(chunks.length).toBeGreaterThan(0);
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expect(chunks[0].text).toContain('Just a page');
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});
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test('private takes fence ALSO stripped (regression — v0.28 behavior preserved)', () => {
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const body = `# Page
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<!--- gbrain:takes:begin -->
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| # | claim | kind | who | weight | since | source |
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|---|-------|------|-----|--------|-------|--------|
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| 1 | PRIVATE_TAKE | take | brain | 0.9 | 2026-01-01 | |
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<!--- gbrain:takes:end -->
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Body text.`;
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const chunks = chunkText(body);
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const allText = chunks.map(c => c.text).join('\n');
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expect(allText).not.toContain('PRIVATE_TAKE');
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expect(allText).toContain('Body text');
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});
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});
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// ─────────────────────────────────────────────────────────────────
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// Layer B: get_page strip trigger — ctx.remote drives the filter
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// ─────────────────────────────────────────────────────────────────
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//
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// The trigger logic lives in src/core/operations.ts (the get_page
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// handler) and is unit-tested via direct stripFactsFence + the
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// `ctx.remote === true` check pattern. Full operations-dispatch
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// integration test for get_page over MCP lives in
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// test/e2e/system-of-record-invariant.test.ts (commit 10).
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describe('Layer B — get_page strip trigger (Codex R2-#5)', () => {
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test('stripFactsFence({keepVisibility:["world"]}) drops private rows in body', async () => {
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// Use the fence's own stripFactsFence helper to verify the
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// shape that operations.ts will call. The trigger lives in
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// operations.ts:413 (now `ctx.remote === true`); we test the
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// helper here, and the trigger plumbing E2E in commit 10.
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const { stripFactsFence } = await import('../src/core/facts-fence.ts');
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const body = FENCE_BODY(
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`| 1 | WORLD_ROW | fact | 1.0 | world | high | 2026-01-01 | | s | |
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| 2 | PRIVATE_ROW | fact | 1.0 | private | high | 2026-01-01 | | s | |`,
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);
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const stripped = stripFactsFence(body, { keepVisibility: ['world'] });
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expect(stripped).toContain('WORLD_ROW');
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expect(stripped).not.toContain('PRIVATE_ROW');
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});
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});
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// ─────────────────────────────────────────────────────────────────
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// Forget-as-fence (Codex R2-#3)
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// ─────────────────────────────────────────────────────────────────
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async function seedV51Fact(opts: {
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entity_slug: string;
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source_markdown_slug: string;
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row_num: number;
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fact: string;
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source?: string;
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}): Promise<number> {
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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const r = await (engine as any).db.query(
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`INSERT INTO facts (source_id, entity_slug, fact, kind, visibility, notability,
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valid_from, source, confidence, row_num, source_markdown_slug)
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VALUES ('default', $1, $2, 'fact', 'world', 'medium', now(), $3, 1.0, $4, $5)
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RETURNING id`,
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[opts.entity_slug, opts.fact, opts.source ?? 's', opts.row_num, opts.source_markdown_slug],
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);
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return r.rows[0].id;
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}
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function seedFile(slug: string, rows: string): void {
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const filePath = join(brainDir, `${slug}.md`);
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mkdirSync(join(brainDir, slug.split('/')[0]), { recursive: true });
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writeFileSync(filePath, FENCE_BODY(rows), 'utf-8');
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}
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describe('forgetFactInFence — fence path (happy)', () => {
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test('rewrites the fence row with strikethrough + valid_until + forgotten context', async () => {
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const id = await seedV51Fact({
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entity_slug: 'people/alice', source_markdown_slug: 'people/alice',
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row_num: 1, fact: 'I will hit $10M by Q4',
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});
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seedFile('people/alice', `| 1 | I will hit $10M by Q4 | fact | 1.0 | world | medium | 2026-01-01 | | s | |`);
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const r = await forgetFactInFence(engine, id, { reason: 'changed my mind' });
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expect(r.ok).toBe(true);
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expect(r.path).toBe('fence');
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const body = readFileSync(join(brainDir, 'people/alice.md'), 'utf-8');
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expect(body).toContain('~~I will hit $10M by Q4~~');
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expect(body).toContain('forgotten: changed my mind');
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// DB row expired_at is now non-null + valid_until set to today.
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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const dbRow = await (engine as any).db.query(
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'SELECT expired_at, valid_until FROM facts WHERE id = $1', [id],
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);
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expect(dbRow.rows[0].expired_at).not.toBeNull();
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expect(dbRow.rows[0].valid_until).not.toBeNull();
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});
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test('re-parsing the rewritten fence sees forgotten=true + active=false', async () => {
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const id = await seedV51Fact({
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entity_slug: 'people/alice', source_markdown_slug: 'people/alice',
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row_num: 1, fact: 'F1',
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});
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seedFile('people/alice', `| 1 | F1 | fact | 1.0 | world | medium | 2026-01-01 | | s | |`);
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await forgetFactInFence(engine, id, { reason: 'test' });
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const body = readFileSync(join(brainDir, 'people/alice.md'), 'utf-8');
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const parsed = parseFactsFence(body);
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expect(parsed.facts[0]).toMatchObject({
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claim: 'F1',
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active: false,
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forgotten: true,
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});
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});
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test('default reason is "forgotten" when caller omits it', async () => {
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const id = await seedV51Fact({
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entity_slug: 'people/alice', source_markdown_slug: 'people/alice',
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row_num: 1, fact: 'F',
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});
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seedFile('people/alice', `| 1 | F | fact | 1.0 | world | medium | 2026-01-01 | | s | |`);
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const r = await forgetFactInFence(engine, id);
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expect(r.reason).toBe('forgotten');
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const body = readFileSync(join(brainDir, 'people/alice.md'), 'utf-8');
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expect(body).toContain('forgotten: forgotten');
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});
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test('preserves existing context cell (appends rather than overwriting)', async () => {
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const id = await seedV51Fact({
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entity_slug: 'people/alice', source_markdown_slug: 'people/alice',
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row_num: 1, fact: 'F',
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});
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seedFile(
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'people/alice',
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`| 1 | F | fact | 1.0 | world | medium | 2026-01-01 | | s | important note |`,
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);
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await forgetFactInFence(engine, id, { reason: 'r' });
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const body = readFileSync(join(brainDir, 'people/alice.md'), 'utf-8');
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expect(body).toContain('important note');
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expect(body).toContain('forgotten: r');
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});
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});
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describe('forgetFactInFence — fallback paths', () => {
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test('legacy NULL-row_num fact falls back to DB-only expire', async () => {
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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const r = await (engine as any).db.query(
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`INSERT INTO facts (source_id, entity_slug, fact, kind, visibility, notability,
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valid_from, source, confidence)
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VALUES ('default', 'people/alice', 'legacy', 'fact', 'world', 'medium',
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now(), 's', 1.0) RETURNING id`,
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);
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const id = r.rows[0].id;
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const result = await forgetFactInFence(engine, id);
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expect(result.ok).toBe(true);
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expect(result.path).toBe('legacy_db');
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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const after = await (engine as any).db.query(
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'SELECT expired_at FROM facts WHERE id = $1', [id],
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);
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expect(after.rows[0].expired_at).not.toBeNull();
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});
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test('missing local_path on source falls back to DB-only', async () => {
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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await (engine as any).db.query(`UPDATE sources SET local_path = NULL WHERE id = 'default'`);
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const id = await seedV51Fact({
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entity_slug: 'people/alice', source_markdown_slug: 'people/alice',
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row_num: 1, fact: 'F',
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});
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const result = await forgetFactInFence(engine, id);
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expect(result.ok).toBe(true);
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expect(result.path).toBe('legacy_db');
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});
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test('missing entity page file falls back to DB-only (file deleted out from under us)', async () => {
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const id = await seedV51Fact({
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entity_slug: 'people/ghost', source_markdown_slug: 'people/ghost',
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row_num: 1, fact: 'F',
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});
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// No file created — page exists in DB but not on disk.
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expect(existsSync(join(brainDir, 'people/ghost.md'))).toBe(false);
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const result = await forgetFactInFence(engine, id);
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expect(result.ok).toBe(true);
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expect(result.path).toBe('legacy_db');
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});
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test('row_num drift (DB has v51 cols but fence missing the row) falls back to DB-only', async () => {
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const id = await seedV51Fact({
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entity_slug: 'people/alice', source_markdown_slug: 'people/alice',
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row_num: 99, fact: 'F', // row_num 99 in DB but only row 1 in fence
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});
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seedFile('people/alice', `| 1 | Different fact | fact | 1.0 | world | medium | 2026-01-01 | | s | |`);
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const result = await forgetFactInFence(engine, id);
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expect(result.ok).toBe(true);
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expect(result.path).toBe('legacy_db');
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});
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test('unknown id returns ok:false path:not_found', async () => {
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const result = await forgetFactInFence(engine, 999999);
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expect(result.ok).toBe(false);
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expect(result.path).toBe('not_found');
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});
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test('already-expired id returns ok:false path:already_expired', async () => {
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const id = await seedV51Fact({
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entity_slug: 'people/alice', source_markdown_slug: 'people/alice',
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row_num: 1, fact: 'F',
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});
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// eslint-disable-next-line @typescript-eslint/no-explicit-any
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await (engine as any).db.query(`UPDATE facts SET expired_at = now() WHERE id = $1`, [id]);
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const result = await forgetFactInFence(engine, id);
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expect(result.ok).toBe(false);
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expect(result.path).toBe('already_expired');
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});
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});
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afterAll(() => {
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try { if (brainDir) rmSync(brainDir, { recursive: true, force: true }); }
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catch { /* best-effort */ }
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});
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