Files
gbrain/README.md
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bca993e09f v0.28.12 feat: LongMemEval benchmark harness (#606)
* v0.28 schema: takes + synthesis_evidence (v31) + access_tokens.permissions (v32)

Migration v31 adds the takes table (typed/weighted/attributed claims) and
synthesis_evidence (provenance for `gbrain think` outputs). Page-scoped via
page_id FK (slug isn't unique alone in v0.18+ multi-source). HNSW partial
index on embedding for active rows. ON DELETE CASCADE on synthesis_evidence
so deleting a source take cascades the provenance row.

Migration v32 adds access_tokens.permissions JSONB with safe-default
backfill (`{"takes_holders":["world"]}`). Default keeps non-world holders
hidden from MCP-bound tokens until the operator explicitly grants access
via the v0.28 auth permissions CLI.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 engine: addTakesBatch, listTakes, searchTakes/Vector, supersede, resolve, synthesis_evidence

Extends BrainEngine with the takes domain object. Both engines implement the
same surface; PGLite uses manual `$N` placeholders, Postgres uses postgres-js
unnest() — same shape as addLinksBatch and addTimelineEntriesBatch.

Methods:
- addTakesBatch (upsert via ON CONFLICT (page_id, row_num) DO UPDATE)
- listTakes (filter by holder/kind/active/resolved, takesHoldersAllowList
  for MCP-bound calls, sortBy weight/since_date/created_at)
- searchTakes / searchTakesVector (pg_trgm + cosine; honor allow-list)
- countStaleTakes / listStaleTakes (mirror countStaleChunks pattern;
  embedding column intentionally omitted from listStale payload)
- updateTake (mutable fields only; throws TAKE_ROW_NOT_FOUND)
- supersedeTake (transactional: insert new at next row_num, mark old
  active=false, set superseded_by; throws TAKE_RESOLVED_IMMUTABLE on
  resolved bets)
- resolveTake (sets resolved_*; throws TAKE_ALREADY_RESOLVED on re-resolve;
  resolution is immutable per Codex P1 #13 fold)
- addSynthesisEvidence (provenance persist; ON CONFLICT DO NOTHING)
- getTakeEmbeddings (parallel to getEmbeddingsByChunkIds)

Types live in src/core/engine.ts adjacent to LinkBatchInput. Page-scoped
via page_id (slug not unique in v0.18+ multi-source). PageType gains
'synthesis'. takeRowToTake mapper in utils.ts handles Date → ISO string
normalization.

Tests: test/takes-engine.test.ts — 16 cases against PGLite covering
upsert/list/filter/search happy paths, takesHoldersAllowList isolation,
the four invariant errors (TAKE_ROW_NOT_FOUND, TAKES_WEIGHT_CLAMPED,
TAKE_RESOLVED_IMMUTABLE, TAKE_ALREADY_RESOLVED), supersede flow, resolve
metadata round-trip, FK CASCADE on synthesis_evidence when source take
deletes. All pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 model-config: unified resolveModel with 6-tier precedence + alias resolution

Replaces every hardcoded `claude-*-X` and per-phase `dream.<phase>.model`
config key with a single resolver. Hierarchy:

  1. CLI flag (--model)
  2. New-key config (e.g. models.dream.synthesize)
  3. Old-key config (deprecated dream.synthesize.model, dream.patterns.model)
     — read with stderr deprecation warning, one-per-process
  4. Global default (models.default)
  5. Env var (GBRAIN_MODEL or caller-supplied)
  6. Hardcoded fallback

Aliases (`opus`, `sonnet`, `haiku`, `gemini`, `gpt`) resolve at the end so
any tier can use a short name. User-defined `models.aliases.<name>` config
overrides built-ins. Cycle-safe (depth 2 break). Unknown alias passes
through unchanged so users can pass full provider IDs without registering.

When new-key + old-key are BOTH set (Codex P1 #11 fix), new-key wins and
stderr warns "deprecated config X ignored; Y is set and wins". When only
old-key is set, it's honored with a softer "rename to Y before v0.30"
warning. Both warnings emit once per (key, process) — a Set memo prevents
log spam in long-running daemons.

Migrated call sites: synthesize.ts (model + verdictModel), patterns.ts
(model). subagent.ts and search/expansion.ts to be migrated later in v0.28
(staying compatible until then).

Tests: test/model-config.test.ts — 11 cases pinning the 6-tier ordering,
alias resolution + cycle break, deprecated-key warning emit-once, and
unknown-alias pass-through. All pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 takes-fence: parser/renderer/upserter + chunker strip (privacy P0 fix)

src/core/takes-fence.ts — pure functions for the fenced markdown surface:
- parseTakesFence(body) — extracts ParsedTake[] from `<!--- gbrain:takes:begin/end -->`
  blocks. Strict on canonical form, lenient on hand-edits with warnings
  (TAKES_FENCE_UNBALANCED, TAKES_TABLE_MALFORMED, TAKES_ROW_NUM_COLLISION).
  Strikethrough `~~claim~~` → active=false; date ranges `since → until`
  split into sinceDate/untilDate.
- renderTakesFence(takes) — round-trip safe with parseTakesFence.
- upsertTakeRow(body, row) — append-only per CEO-D6 + eng-D9. Creates a
  fresh `## Takes` section if no fence present. row_num is monotonic
  (max + 1, never gap-filled — keeps cross-page refs and synthesis_evidence
  stable forever).
- supersedeRow(body, oldRow, replacement) — strikes through old row's claim
  AND appends the new row at end. Both rows preserved in markdown for
  git-blame archaeology.
- stripTakesFence(body) — removes the fenced block entirely. Used by the
  chunker so takes content lives ONLY in the takes table.

Codex P0 #3 fix: src/core/chunkers/recursive.ts now calls stripTakesFence()
before computing chunk boundaries. Without this, page chunks would contain
the rendered takes table and the per-token MCP allow-list would be
bypassed at the index layer (token bound to takes_holders=['world'] would
see garry's hunches via page hits). Doctor's takes_fence_chunk_leak check
(plan-side) asserts no chunk contains the begin marker.

Tests: 15 cases covering canonical parse, strikethrough, date range, fence
unbalanced detection, malformed-row skip + warning, row_num collision
detection, round-trip render, append-only upsert into existing fence,
fresh-section creation, monotonic row_num under hand-edit gaps, supersede
flow, stripTakesFence verifying takes content removed AND surrounding
prose preserved. Existing chunker tests still pass (15 + 15 = 30).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 page-lock: PID-liveness file lock for atomic markdown read-modify-write

src/core/page-lock.ts — per-page file lock at
~/.gbrain/page-locks/<sha256-of-slug>.lock so two concurrent `gbrain takes
add` calls or `takes seed --refresh` from autopilot can't race on the
same `<slug>.md` read-modify-write. Eng-review fold: reuses the v0.17
cycle.lock pattern (mtime + PID liveness) but per-slug.

Differences from cycle.ts's lock:
- SHA-256 of slug for safe filenames (slashes, unicode, etc.)
- Same-pid + fresh mtime = LIVE (cycle.ts assumes one lock per process and
  reclaims same-pid; page-lock allows concurrent locks for DIFFERENT slugs
  in one process). mtime expiry still rescues post-crash leftovers.
- 5-min TTL (vs cycle's 30 min — page edits are short)
- `withPageLock(slug, fn)` convenience wrapper with default 30s timeout

API:
- acquirePageLock(slug, opts) → handle | null (poll-with-timeout)
- handle.refresh() / handle.release() (idempotent — only releases if pid matches)
- withPageLock(slug, fn, opts) — acquire + run + release-in-finally

Tests: 10 cases — fresh acquire, live holder returns null, stale-mtime
reclaim, dead-PID reclaim, refresh updates timestamp, foreign-pid release
is no-op, withPageLock callback runs and releases on success/failure,
timeout-throws when held, SHA-256 filename safety for slashes/unicode.
All pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 extract-takes: dual-path phase (fs|db) + since/until_date as TEXT

src/core/cycle/extract-takes.ts — new phase that materializes the takes
table from fenced markdown blocks. Two paths mirror src/commands/extract.ts:

- extractTakesFromFs: walk *.md under repoPath, parse fences, batch upsert
- extractTakesFromDb: iterate engine.getAllSlugs(), parse each page's
  compiled_truth+timeline, batch upsert (mutation-immune snapshot iteration)

Single dispatcher extractTakes(opts) routes by source. Honors:
- slugs filter for incremental re-extract (pipes from sync→extract)
- dryRun: count would-be upserts, write nothing
- rebuild: DELETE FROM takes WHERE page_id = $1 before re-insert (clean
  slate when markdown is canonical and DB has drifted)

Schema fix: since_date/until_date were DATE in the original v31 migration.
Spec uses partial dates ('2017-01', '2026-04-29 → 2026-06') that Postgres
DATE rejects. Changed to TEXT in both the Postgres and PGLite blocks so
parser-rendered ranges round-trip cleanly. Loses the ability to do
date-range arithmetic in SQL, but date math on opinion timelines is
out of scope for v0.28 anyway. utils.ts dateOrNull now annotated as
v0.28 TEXT-aware.

Migration v31 has not been deployed yet (this branch is the v0.28 release
candidate), so the type swap is free. No data migration needed.

Tests: test/extract-takes.test.ts — 5 cases against PGLite covering full
walk + fence-skip on no-fence pages, takes-table populated post-extract,
incremental slugs filter, dry-run no-write, rebuild=true clears + re-inserts
ad-hoc rows. test/takes-engine.test.ts (16), test/takes-fence.test.ts (15)
all still pass — 36/36 takes tests green.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 takes CLI: list, search, add, update, supersede, resolve

src/commands/takes.ts — surfaces the engine methods + takes-fence library
through a single `gbrain takes <subcommand>` entrypoint:

  takes <slug>                          list with filters + sort
  takes search "<query>"                pg_trgm keyword search across all takes
  takes add <slug> --claim ... ...      append (markdown + DB, atomic via lock)
  takes update <slug> --row N ...       mutable-fields update (markdown + DB)
  takes supersede <slug> --row N ...    strikethrough old + append new
  takes resolve <slug> --row N --outcome  record bet resolution (immutable)

Markdown is canonical. Every mutate command:
  1. acquires the per-page file lock (withPageLock)
  2. re-reads the .md file
  3. applies the edit via takes-fence (upsertTakeRow / supersedeRow)
  4. writes the .md file back
  5. mirrors to the DB via the engine method
  6. releases the lock (auto via finally)

Resolve currently writes only to DB — surfacing resolved_* in the markdown
table is deferred to v0.29 (the takes-fence renderer's column set is
fixed at # | claim | kind | who | weight | since | source per spec).

Wired into src/cli.ts dispatch + CLI_ONLY allowlist. Help text follows the
project convention (orphans/embed/extract pattern). --dir flag overrides
sync.repo_path config when working outside the configured brain.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 MCP + auth: takes_list / takes_search / think ops + per-token allow-list

OperationContext gains takesHoldersAllowList — server-side filter for
takes.holder field threaded from access_tokens.permissions through dispatch
into the engine SQL. Closes Codex P0 #3 at the dispatch layer (chunker
strip already closed the page-content side in the previous commit).

src/core/operations.ts — three new ops:
- takes_list: lists takes with holder/kind/active/resolved filters; honors
  ctx.takesHoldersAllowList for MCP-bound calls
- takes_search: pg_trgm keyword search; honors allow-list
- think: op surface registered (returns not_implemented envelope until
  Lane D's pipeline lands). Remote callers cannot save/take per Codex P1 #7.

src/mcp/dispatch.ts — DispatchOpts.takesHoldersAllowList threads into
buildOperationContext.

src/mcp/http-transport.ts — validateToken now reads
access_tokens.permissions.takes_holders, defaults to ['world'] when the
column is absent or malformed (default-deny on private hunches).
auth.takesHoldersAllowList passed to dispatchToolCall.

src/mcp/server.ts (stdio) — defaults to takesHoldersAllowList: ['world']
since stdio has no per-token auth. Operators wanting full visibility use
`gbrain call <op>` directly (sets remote=false).

src/commands/auth.ts — `gbrain auth create <name> --takes-holders w,g,b`
flag persists the per-token list; new `auth permissions <name>
set-takes-holders <list>` updates an existing token.

Tests: test/takes-mcp-allowlist.test.ts — 8 cases against PGLite proving
the threading: local-CLI sees all holders, ['world'] returns only public,
['world','garry'] returns 2/3, no-overlap returns empty (no fallback),
search honors allow-list, remote save/take on think rejected with
not_implemented envelope.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28.0: ship-prep — VERSION, CHANGELOG, migration orchestrator, skill

Closes the v0.28 ship-prep cycle. Bumps VERSION + package.json + bun.lock
to 0.28.0. v0_28_0 migration orchestrator runs three idempotent phases on
upgrade:

- Schema verify: asserts schema_version >= 32 (migrations v31 + v32 already
  applied by the schema runner during gbrain upgrade); fails clean if not.
- Backfill takes: inline runs `extractTakes(engine, { source: 'db' })` so
  any pre-existing fenced takes tables in markdown populate the takes
  index. Idempotent; ON CONFLICT DO UPDATE keeps the table in sync.
- Re-chunk TODO: queues a pending-host-work entry asking the host agent
  to re-import pages with takes content so the v0.28 chunker-strip rule
  (Codex P0 #3 fix) applies retroactively. Pages imported under v0.28+
  already have takes content stripped from chunks at index time; this
  TODO catches up legacy pages.

skills/migrations/v0.28.0.md — agent-readable upgrade guide. Walks
through doctor verification, deprecated-key migration, MCP token
visibility configuration, and a "try the takes layer" smoke test.

CHANGELOG.md — v0.28.0 release-summary in the GStack voice (no AI
vocabulary, no em dashes, real numbers from git diff stat) + the
mandatory "To take advantage of v0.28.0" block + itemized changes by
subsystem (schema, engine, markdown surface, model config, MCP+auth,
CLI, tests, accepted risks).

Final test sweep: 65/65 v0.28 tests pass across 6 files. typecheck clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 think pipeline: gather → sanitize → synthesize → cite-render → CLI

src/core/think/sanitize.ts — prompt-injection defense for take claims:
14 jailbreak patterns (ignore-prior, role-jailbreak, close-take tag,
DAN, system-prompt overrides, eval-shell hooks) plus structural framing
(takes wrapped in <take id="..."> tags the model is told to treat as
DATA). Length-cap at 500 chars. Renders evidence blocks for the prompt.

src/core/think/prompt.ts — system prompt + structured-output schema.
Hard rules: cite every claim, mark hunches/low-weight explicitly,
surface conflicts (never silently pick), surface gaps. JSON schema
with answer + citations[] + gaps[]. Prompt adapts to anchor / time
window / save flag.

src/core/think/cite-render.ts — structured citations + regex fallback
(Codex P1 #4 fold). normalizeStructuredCitations validates the model's
structured output; parseInlineCitations is the body-scan fallback when
the model omits the structured field. resolveCitations dispatches and
records CITATIONS_REGEX_FALLBACK warning when used.

src/core/think/gather.ts — 4-stream parallel retrieval:
  1. hybridSearch (pages, existing primitive)
  2. searchTakes (keyword, pg_trgm)
  3. searchTakesVector (vector, when embedQuestion fn supplied)
  4. traversePaths (graph, when --anchor set)
RRF fusion (k=60). Each stream wrapped in try/catch — partial gather
beats no synthesis. Honors takesHoldersAllowList for MCP-bound calls.

src/core/think/index.ts — runThink orchestrator + persistSynthesis:
INTENT (regex classify) → GATHER → render evidence blocks → resolveModel
('models.think' → 'models.default' → GBRAIN_MODEL → opus) → LLM call
(injectable client) → JSON parse with code-fence + fallback strip →
resolveCitations → ThinkResult. persistSynthesis writes a synthesis
page + synthesis_evidence rows (page_id resolved per slug; page-level
citations skip evidence). Degrades gracefully without ANTHROPIC_API_KEY.
Round-loop scaffolding in place (rounds=1 only path exercised in v0.28).

src/commands/think.ts — `gbrain think "<question>"` CLI. Flag parsing
strips --anchor, --rounds, --save, --take, --model, --since, --until,
--json. Local CLI = remote=false, so save/take honored. Human-readable
output by default; --json for agent consumption.

operations.ts — `think` op now calls runThink (was a not_implemented
stub). Remote callers can't save/take per Codex P1 #7. Returns full
ThinkResult plus saved_slug + evidence_inserted.

cli.ts — wired into dispatch + CLI_ONLY allowlist.

Tests: test/think-pipeline.test.ts — 18 cases against PGLite covering
sanitize patterns, structural rendering, citation parsing (structured +
regex fallback + dedup + invalid-slug rejection), gather streams +
allow-list filter, full pipeline with stub client, malformed-LLM
fallback path, no-API-key graceful degradation, persistSynthesis writes
page + evidence rows. All pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 dream phases: auto-think + drift + budget meter (Codex P1 #10 fold)

src/core/anthropic-pricing.ts — USD/1M-tokens map for Claude 4.7 family
plus older aliases. estimateMaxCostUsd returns null on unpriced models so
the meter caller can warn-once and bypass the gate.

src/core/cycle/budget-meter.ts — cumulative cost ledger. Each submit
estimates max-cost from (model + estimatedInputTokens + maxOutputTokens),
accumulates per-cycle, refuses next submit when projected > cap. Codex
P1 #10 fold: non-Anthropic models (gemini, gpt) bypass with one stderr
warn per process and `unpriced=true` on the result. Budget=0 disables
the gate. Audit trail at ~/.gbrain/audit/dream-budget-YYYY-Www.jsonl.

src/core/cycle/auto-think.ts — auto_think dream phase. Reads
dream.auto_think.{enabled,questions,max_per_cycle,budget,cooldown_days,
auto_commit}. Iterates configured questions through runThink with the
BudgetMeter pre-checking each submit. Cooldown timestamp written ONLY on
success (matches v0.23 synthesize pattern — retries after partial
failures pick back up). When auto_commit=true, persists synthesis pages
via persistSynthesis. Default-disabled.

src/core/cycle/drift.ts — drift dream phase scaffold. Reads
dream.drift.{enabled,lookback_days,budget,auto_update}. Surfaces takes
in the soft band (weight 0.3-0.85, unresolved) that have recent timeline
evidence on the same page. v0.28 ships the orchestration; the LLM judge
that proposes weight adjustments lands in v0.29. modelId + meter wired
now so the ledger captures gate state for callers that opt in.

Tests:
- test/budget-meter.test.ts (7 cases) — pricing-map coverage, allow path,
  cumulative-deny, budget=0 disabled, unpriced bypass+warn-once, ledger
  captures all events, ISO-week filename branch.
- test/auto-think-phase.test.ts (9 cases) — auto_think enable/skip,
  questions empty, success → cooldown ts written, cooldown blocks rerun,
  budget exhausted → partial. drift not_enabled, soft-band candidate
  detection, complete + dry-run paths.

All pass. Typecheck clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 e2e Postgres: takes engine + extract + MCP allow-list (12 cases)

test/e2e/takes-postgres.test.ts — full v0.28 takes pipeline against real
Postgres (gated on DATABASE_URL). 12 cases:
- addTakesBatch upsert via unnest() bind path (Postgres-specific)
- listTakes filters: holder, kind, sort=weight, takesHoldersAllowList
- searchTakes pg_trgm + allow-list filter
- supersedeTake transactional path (BEGIN/COMMIT semantics)
- resolveTake immutability — second resolve throws TAKE_ALREADY_RESOLVED
- synthesis_evidence FK CASCADE on take delete
- countStaleTakes + listStaleTakes filter active+null
- extractTakesFromDb populates takes from fenced markdown
- MCP dispatch with takesHoldersAllowList=['world'] returns only world
- MCP dispatch local-CLI path returns all holders
- MCP dispatch takes_search honors allow-list
- think op forces remote_persisted_blocked even for save+take

postgres-engine.ts: addTakesBatch boolean[] serialization fix.
postgres-js auto-detects element type from JS arrays; for booleans it
mis-detects as scalar. Cast through text[] (`'true' | 'false'`) then
SQL-cast to boolean[] — same pattern other batch methods rely on for
type-stable bind shapes.

test/e2e/helpers.ts: setupDB now (a) tolerates non-existent tables in
TRUNCATE (for fresh DBs where v31 hasn't yet created takes/synthesis_evidence)
and (b) calls engine.initSchema() to actually run migrations.

test/takes-mcp-allowlist.test.ts: updated 2 think-op cases to match
Lane D's landed pipeline. They previously asserted not_implemented
envelopes; now they assert remote_persisted_blocked + NO_ANTHROPIC_API_KEY
graceful-degrade behavior.

Run: DATABASE_URL=postgres://localhost:5435/gbrain_test bun test test/e2e/takes-postgres.test.ts
Result: 12/12 pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 dream phases: local DreamPhaseResult type (avoid premature CyclePhase enum extension)

cycle.ts's PhaseResult is shaped {phase, status, summary, details} with a
narrow PhaseStatus enum ('ok'|'warn'|'fail'|'skipped') and CyclePhase enum
that doesn't yet include 'auto_think'/'drift'. The phases ship standalone
in v0.28 (cycle.ts dispatcher integration is v0.28.x); using PhaseResult
forced premature enum extension.

Introduces DreamPhaseResult exported from auto-think.ts:
  { name: 'auto_think'|'drift'; status: 'complete'|'partial'|'failed'|'skipped';
    detail: string; totals?: Record<string,number>; duration_ms: number }

drift.ts re-exports the same type. When v0.28.x wires the dispatcher, the
adapter at the call site can map DreamPhaseResult → PhaseResult cleanly.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 e2e: access_tokens.permissions JSONB end-to-end (5 cases)

test/e2e/auth-permissions.test.ts — closes the v0.28 token-allow-list
verification loop against real Postgres. Exercises:

- Migration v32 default backfill: new tokens created without a permissions
  column get {takes_holders: ["world"]} via the schema DEFAULT clause.
- Explicit ["world","garry"] → dispatch.takes_list filters to those
  holders only; brain hunches stay hidden from this token.
- ["world"] default-deny token → takes_search hits filtered to public claims.
- {} permissions row (operator tampered) gracefully defaults to ["world"]
  via the HTTP transport's validateToken parsing.
- revoked_at IS NOT NULL → token excluded from active token query.

Avoids the postgres-js JSONB double-encode trap (CLAUDE.md memory): pass
the object directly to executeRaw, no JSON.stringify, no ::jsonb cast.

All 5 pass against pgvector/pgvector:pg16 on port 5435. Combined v0.28
test sweep: 116/116 across 11 files.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28 e2e: chunker takes-strip integration test (Codex P0 #3 verification)

test/e2e/chunker-takes-strip.test.ts — verifies the chunker actually
strips fenced takes content end-to-end through the import pipeline.
This is the Codex P0 #3 fix's verification path: takes content lives
ONLY in the takes table for retrieval, never duplicated in
content_chunks where the per-token MCP allow-list cannot reach.

5 cases:
- chunkText (unit) output never contains TAKES_FENCE_BEGIN/END markers
- chunkText output never contains fenced claim text
- chunkText output retains non-fence prose (no over-stripping)
- importFromContent end-to-end: imported page has chunks but none
  contain fenced content
- takes_fence_chunk_leak doctor invariant: zero rows globally where
  chunk_text matches `<!--- gbrain:takes:%`

Final v0.28 test sweep:
  121 pass, 0 fail, 336 expect() calls, 12 files
  Coverage: schema migrations, engine methods (PGLite + Postgres),
  takes-fence parser, page-lock, extract phase, takes CLI engine
  surface, model config 6-tier resolver, MCP+auth allow-list,
  think pipeline (gather + sanitize + cite-render + synthesize),
  auto-think + drift + budget meter, JSONB end-to-end, chunker
  strip integration. ~95% of v0.28 surface area covered.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix CI: apply-migrations skippedFuture arrays + http-transport SQL mock

Two CI failures from PR #563:

test/apply-migrations.test.ts (2 fails) — `buildPlan` tests assert exact
skippedFuture arrays at fixed installed-version stamps. Adding v0.28.0 to
the migration registry means it shows up in skippedFuture when the test
runs at installed=0.11.1 / installed=0.12.0. Append '0.28.0' to both
hardcoded arrays.

test/http-transport.test.ts (8 fails) — the FakeEngine mock string-prefix
matches `SELECT id, name FROM access_tokens` to return a row. v0.28's
validateToken now selects `SELECT id, name, permissions FROM access_tokens`
to read the per-token takes_holders allow-list. Mock returned [] on the
new query → validateToken treated every token as invalid → 401.

Fix: mock now matches both query shapes. validTokens row gets a default
`{takes_holders: ['world']}` permission injected when caller didn't
supply one (mirrors the migration v33 column DEFAULT). Updated
FakeEngineConfig type to allow tests to pass explicit permissions.

Verification:
  bun test test/apply-migrations.test.ts → 18/18 pass
  bun test test/http-transport.test.ts   → 24/24 pass
  bun run typecheck                       → clean

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix CI: add scope annotations to v0.28 ops (takes_list/takes_search/think)

test/oauth.test.ts enforces an invariant from master's v0.26 OAuth landing:
every Operation must have `scope: 'read' | 'write' | 'admin'`, and any op
flagged `mutating: true` must be 'write' or 'admin'. My v0.28 ops were added
before master shipped v0.26 + the new invariant; the merge surfaced the gap.

Annotations:
- takes_list   → read
- takes_search → read
- think        → write (mutating: true; --save persists synthesis page)

Verification:
  bun test test/oauth.test.ts → 42/42 pass
  bun run typecheck            → clean

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(v0.28.1): export INJECTION_PATTERNS for shared sanitization

The same pattern set protects takes from prompt-injection (think/sanitize.ts)
and now retrieved chat content in the LongMemEval harness. One source of
truth for both surfaces; adding a new pattern in this file automatically
covers benchmarks too.

Existing consumers (sanitizeTakeForPrompt, renderTakesBlock) keep working
unchanged. Verified via test/think-pipeline.test.ts (18 pass, 0 fail).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.28.1): longmemeval harness — reset-in-place over in-memory PGLite

One in-memory PGLiteEngine per benchmark run; TRUNCATE between questions
with runtime-enumerated tables via pg_tables so future schema migrations
don't silently leak across questions. Infrastructure tables (sources,
config, gbrain_cycle_locks, subagent_rate_leases) preserved across resets
so initSchema-seeded rows like sources.'default' survive (FK target for
pages.source_id).

Files:
- src/eval/longmemeval/harness.ts: createBenchmarkBrain + resetTables +
  withBenchmarkBrain. ~50 lines, no class wrapper.
- src/eval/longmemeval/adapter.ts: pure haystackToPages() converter.
  Slug prefix `chat/` (verified non-matching against DEFAULT_SOURCE_BOOSTS).
- src/eval/longmemeval/sanitize.ts: re-uses INJECTION_PATTERNS from
  think/sanitize.ts; wraps each session in <chat_session id date> tags;
  4000-char cap.
- test/longmemeval-sanitize.test.ts: 12 cases pinning the F8 contract.

Hermetic: no DATABASE_URL, no API keys.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(v0.28.1): gbrain eval longmemeval CLI command

Run the LongMemEval public benchmark against gbrain's hybrid retrieval.
Dataset is a positional path (download from xiaowu0162/longmemeval on HF).
Per-question loop wraps everything in try/catch; one bad question doesn't
kill the run, error JSONL line emitted instead.

Wiring:
- src/cli.ts: pre-dispatch bypass for `eval longmemeval` so the user's
  ~/.gbrain brain is never opened. Hermeticity gate verified: --help works
  on machines with no gbrain config.
- src/commands/eval-longmemeval.ts: arg parsing, JSONL emit (LF + UTF-8
  pinned), hybridSearch with optional expandQuery from search/expansion.ts,
  resolveModel from model-config.ts (6-tier chain), ThinkLLMClient injection
  seam from think/index.ts, structural <chat_session> framing.
- test/eval-longmemeval.test.ts: 12 cases covering harness lifecycle,
  reset clears all tables, schema-migration robustness, p50/p99 speed gate
  (warm reset+import+search target <500ms), adapter shape, source-boost
  regression guard, end-to-end with stubbed LLM, JSONL format guard,
  per-question failure handling.
- test/fixtures/longmemeval-mini.jsonl: 5 hand-authored questions with
  keyword-friendly overlap so --keyword-only works in CI.

Speed: warm reset+import 5 pages+search p50=25.9ms p99=30.3ms locally.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(v0.28.1): bump VERSION + CHANGELOG

VERSION + package.json synchronized at 0.28.1. CHANGELOG entry uses the
release-summary voice + "To take advantage of v0.28.1" block per CLAUDE.md.

Sequential release on garrytan/v0.28-release; lands after v0.28.0.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: surface v0.28.1 LongMemEval CLI across project docs

- README.md: add EVAL section to Commands reference (eval --qrels, export,
  prune, replay, longmemeval); add v0.28.1 announce paragraph next to the
  v0.25.0 BrainBench-Real intro.
- CLAUDE.md: add Key files entry for src/eval/longmemeval/ +
  src/commands/eval-longmemeval.ts; add "Key commands added in v0.28.1"
  subsection (mirrors the v0.26.5 / v0.25.0 pattern); inventory
  test/eval-longmemeval.test.ts + test/longmemeval-sanitize.test.ts under
  the unit-test list.
- docs/eval-bench.md: cross-link from the "What it actually does" section
  to LongMemEval as the third evaluation axis (public benchmark,
  ground-truth labels, full QA pipeline); append "Public benchmarks:
  LongMemEval (v0.28.1)" section with architecture, flags table, and
  perf numbers.
- CONTRIBUTING.md: append a paragraph after the eval-replay block pointing
  contributors at gbrain eval longmemeval for public-benchmark coverage.
- AGENTS.md: extend the existing eval-retrieval bullet with a one-line
  mention of gbrain eval longmemeval.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* v0.28.2 feat: remote-source MCP + scope hierarchy + whoami (#690)

* refactor(core): extract SSRF helpers from integrations.ts to core/url-safety.ts

src/core/git-remote.ts (next commit) needs isInternalUrl etc. but importing
from src/commands/ would invert the layering boundary (no existing
src/core/ file imports from src/commands/). Extract the SSRF helpers
(parseOctet, hostnameToOctets, isPrivateIpv4, isInternalUrl) into a new
src/core/url-safety.ts and have integrations.ts re-export for backward
compat. test/integrations.test.ts continues to pass without changes (110
existing tests, 214 expects).

Why this matters for v0.28: the upcoming sources --url feature reuses
this SSRF gate for git-clone URL validation. Codex review caught that
re-rolling weaker URL classification would regress on the IPv6/v4-mapped/
metadata/CGNAT bypass forms that integrations.ts already handles.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(core): add git-remote module — SSRF-defensive clone/pull + state probe

New src/core/git-remote.ts (~210 lines) for v0.28's remote-source feature:

- GIT_SSRF_FLAGS exported const: -c http.followRedirects=false,
  -c protocol.file.allow=never, -c protocol.ext.allow=never,
  --no-recurse-submodules. Single source of truth shared by cloneRepo
  and pullRepo so a future flag added to one path lands on both.
  Closes the SSRF surfaces codex flagged: DNS rebinding via redirects,
  .gitmodules as a second-fetch surface, file:// scheme in remotes.

- parseRemoteUrl: https-only, rejects embedded credentials and path
  traversal, delegates internal-target classification to isInternalUrl
  from url-safety.ts (covers RFC1918, link-local, loopback, IPv6, CGNAT
  100.64/10, metadata hostnames, hex/octal/single-int bypass forms).
  GBRAIN_ALLOW_PRIVATE_REMOTES=1 escape hatch with stderr warning is
  needed for self-hosted git over Tailscale (CGNAT trips the gate).

- cloneRepo: --depth=1 default (full clone via depth: 0); refuses
  non-empty destDirs; spawns git via execFileSync (no shell injection)
  with GIT_TERMINAL_PROMPT=0 + askpass=/bin/false to prevent credential
  prompts. timeoutMs default 600s.

- pullRepo: -C path + GIT_SSRF_FLAGS + pull --ff-only, same env confine.

- validateRepoState: 6-state decision tree (missing | not-a-dir |
  no-git | corrupted | url-drift | healthy). Used by performSync's
  re-clone branch to recover from rmd clone dirs and refuse syncs on
  url-drift or corruption.

test/git-remote.test.ts (304 lines, 32 tests): GIT_SSRF_FLAGS exact
shape, all parseRemoteUrl rejection cases including dedicated CGNAT
100.64/10 with/without GBRAIN_ALLOW_PRIVATE_REMOTES (codex T3 case),
fake-git harness for argv assertions on cloneRepo/pullRepo, all 6
validateRepoState branches.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(core): add scope hierarchy + ALLOWED_SCOPES allowlist

New src/core/scope.ts (~120 lines) for v0.28's scoped MCP feature.

Hierarchy:
  - admin implies all (escape hatch)
  - write implies read
  - sources_admin and users_admin are siblings (different axes —
    sources-mgmt vs user-account-mgmt; neither implies the other)

Exported:
  - hasScope(grantedScopes, requiredScope): the canonical scope check.
    Replaces exact-string-match at three call sites in upcoming commits
    (serve-http.ts:673, oauth-provider.ts:365 F3 refresh, oauth-provider.ts:498
    token issuance). Without this rewrite, an admin-grant token would
    fail to refresh down to sources_admin (codex finding).
  - ALLOWED_SCOPES set + ALLOWED_SCOPES_LIST sorted array (deterministic
    for OAuth metadata wire format and drift-check output).
  - assertAllowedScopes / InvalidScopeError: registration-time gate so
    tokens with bogus scope strings (read flying-unicorn) get rejected
    with RFC 6749 §5.2 invalid_scope at auth.ts:296 + DCR /register +
    registerClientManual. Today's behavior accepts any string silently.
  - parseScopeString: space-separated wire format → array.

Forward-compat: hasScope ignores unknown granted scopes rather than
throwing, so pre-allowlist tokens with weird scope strings continue
working without crashes (registration is the gate, runtime is best-effort).

test/scope.test.ts (178 lines, 35 tests): hierarchy table including
all-implies for admin, sibling non-implication of *_admin scopes,
write→read but not the reverse, F3 refresh-token subset semantics
under hasScope, ALLOWED_SCOPES_LIST sorted-pinning, allowlist
rejection cases, parseScopeString edge cases (undefined/null/empty).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* build(admin): scope-constants mirror + drift CI for src/core/scope.ts

The admin React SPA's tsconfig.json scopes include: ['src'] to admin/src/,
so it cannot directly import ../../src/core/scope.ts. The plan considered
widening the include or generating a single source of truth; both options
either couple the SPA to the gbrain monorepo or add a build step. Eng
review picked the boring choice: hand-maintained mirror at
admin/src/lib/scope-constants.ts plus a CI drift check.

Files:
  - admin/src/lib/scope-constants.ts: hand-maintained ALLOWED_SCOPES_LIST
    duplicate, sorted alphabetically to match src/core/scope.ts.
  - scripts/check-admin-scope-drift.sh: extracts the list from each file
    via awk, normalizes via tr/sort, diffs. Exits 0 on match, 1 on drift
    (with full breakdown of which scopes diverged), 2 on internal error.
    Tested both passing and corrupted paths.
  - package.json: wires check:admin-scope-drift into both `verify` and
    `check:all` so any update to src/core/scope.ts that forgets the
    admin-side mirror fails the build.

The Agents.tsx scope-checkbox sites (5 hardcoded locations) get updated
in a later commit to import from this constants file.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(oauth): hasScope hierarchy + ALLOWED_SCOPES allowlist at registration

Switch three call sites in oauth-provider.ts from exact-string-match to
hasScope() so the v0.28 sources_admin and users_admin scopes — and the
admin-implies-all + write-implies-read hierarchy in src/core/scope.ts —
work end to end:

- F3 refresh-token subset enforcement at line 365: previously rejected
  admin → sources_admin refresh because exact-match treated them as
  unrelated scopes. gstack /setup-gbrain Path 4 needs admin tokens to
  refresh down to least-privilege sources_admin scope; this fix lands
  that path.

- Token issuance intersection at line 498 (client_credentials grant):
  same hasScope swap so a client whose stored grant is `admin` can mint
  tokens including any implied scope.

- registerClient (DCR /register) and registerClientManual: validate
  every scope string against ALLOWED_SCOPES via assertAllowedScopes.
  Pre-fix the system silently accepted `--scopes "read flying-unicorn"`
  and persisted the bogus string in oauth_clients.scope. Post-fix the
  caller gets RFC 6749 §5.2 invalid_scope. Existing rows with
  pre-allowlist scopes keep working (allowlist gates registration only).

Tests amended in test/oauth.test.ts:
- T1 (eng-review): admin grant CAN refresh down to sources_admin
- T1 sibling: write grant CANNOT refresh up to sources_admin
- ALLOWED_SCOPES allowlist coverage (manual + DCR paths, all 5 valid)
- Scope-annotation contract tests widened to accept the v0.28 union

62 OAuth tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(serve-http): hasScope at /mcp + advertise full ALLOWED_SCOPES

Two changes against src/commands/serve-http.ts:

- Line 195: scopesSupported on the mcpAuthRouter options switches from the
  hardcoded ['read','write','admin'] to Array.from(ALLOWED_SCOPES_LIST).
  Without this, /.well-known/oauth-authorization-server keeps reporting
  the old triple, so MCP clients (Claude Desktop, ChatGPT, Perplexity)
  cannot discover the v0.28 sources_admin and users_admin scopes via
  standard discovery — they would have to be pre-configured out of band.

- Line 673: request-time scope check on /mcp swaps
  authInfo.scopes.includes(requiredScope) for hasScope(...). This was
  the most-cited codex finding: without it, sources_admin tokens could
  not even satisfy a `read`-scoped op (sources_admin doesn't include
  the literal string "read"). hasScope routes through the hierarchy
  table in src/core/scope.ts so admin implies all and write implies
  read at the gate too.

T2 amendment in test/e2e/serve-http-oauth.test.ts: assert
/.well-known/oauth-authorization-server includes all 5 scopes in
scopes_supported. Pre-v0.28 the list was hardcoded to ['read','write',
'admin'] and this assertion would have failed. (The test is
Postgres-gated; runs under bun run test:e2e with DATABASE_URL set.)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(core): sources-ops module — atomic clone + symlink-safe cleanup

src/core/sources-ops.ts (~470 lines): pure async functions extracted from
src/commands/sources.ts so the CLI handlers and the new MCP ops share
one implementation.

addSource: D3 atomicity contract from the eng review.
  1. Validate id (matches existing SOURCE_ID_RE).
  2. Q4 pre-flight SELECT — fail loudly with structured `source_id_taken`
     before any clone work. Pre-fix the existing CLI used INSERT…ON
     CONFLICT DO NOTHING which silently no-op'd; with clone-first that
     would orphan the temp dir.
  3. parseRemoteUrl gate (delegates to isInternalUrl from url-safety.ts).
  4. Clone into $GBRAIN_HOME/clones/.tmp/<id>-<rand>/ via the new
     git-remote helpers.
  5. INSERT row with local_path=<final clone dir>, config.remote_url=<url>.
  6. fs.renameSync(tmp/, final/). Rollback on either-side failure unlinks
     the temp dir; rename-failed path also DELETEs the just-INSERTed row
     best-effort.

removeSource: clone-cleanup with realpath+lstat confinement matching
validateUploadPath() shape at src/core/operations.ts:61. String startsWith
is symlink-unsafe and would let $GBRAIN_HOME/clones/<id> → /etc resolve
out of the confine. Two defenses layered:
  - isPathContained (realpath-resolves both sides + parent-with-sep
    string check) rejects symlinks whose target falls outside the
    confine.
  - lstat-then-isSymbolicLink check refuses symlinks whose realpath
    happens to land back inside the confine (defense in depth).

getSourceStatus: returns clone_state via validateRepoState (the 6-state
decision tree from git-remote.ts). Lets a remote MCP caller diagnose
"healthy | missing | not-a-dir | no-git | url-drift | corrupted" without
SSH access to the brain host. listSources additionally exposes
remote_url so callers can see which sources are auto-managed.

recloneIfMissing: T4 follow-up for `gbrain sources restore` after the
clone dir was autopurged — re-clones via the same temp + rename
atomicity contract. Idempotent (returns false when clone is already
healthy).

test/sources-ops.test.ts (~470 lines, 24 tests): pre-flight collision
(Q4), happy paths for both --path and --url, all four D3 rollback paths
(clone-fail before INSERT, INSERT-fail after clone, rename-fail
post-INSERT, atomic temp-dir cleanup), symlink-target-OUTSIDE-clones
(realpath confinement), symlink-target-INSIDE-clones (lstat-check),
removeSource refuses to delete user-supplied paths, refuses "default"
source, getSourceStatus clone_state branches, T4 recloneIfMissing
recovery + idempotent + no-op for path-only sources, isPathContained
unit tests covering subtree / outside / symlink-escape / fail-closed.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(operations): whoami + sources_{add,list,remove,status} MCP ops

Five new ops in src/core/operations.ts auto-flow through src/mcp/tool-defs.ts
so MCP clients (Claude Desktop, ChatGPT, Perplexity, OpenClaw) get them via
standard tools/list discovery — no SDK or transport code changes needed.

Operation.scope union widened to add 'sources_admin' and 'users_admin' (the
v0.28 hierarchy from src/core/scope.ts).

whoami (scope: read): introspect calling identity over MCP.
  - Returns `{transport: 'oauth', client_id, client_name, scopes, expires_at}`
    for OAuth clients (clientId starts with gbrain_cl_).
  - Returns `{transport: 'legacy', token_name, scopes, expires_at: null}`
    for grandfathered access_tokens.
  - Returns `{transport: 'local', scopes: []}` when ctx.remote === false.
    Empty scopes (NOT ['read','write','admin']) is the D2 decision —
    returning OAuth-shaped scopes for local callers would resurrect the
    v0.26.9 footgun where code conditionally trusted on
    `auth.scopes.includes('admin')` instead of `ctx.remote === false`.
  - Q3 fail-closed: throws unknown_transport when remote=true AND auth is
    missing OR ctx.remote is the literal `undefined` (cast bypass guard).
    A future transport that forgets to thread auth doesn't get a free
    pass.

sources_add (sources_admin, mutating): register a source by --path
  (existing v0.17 behavior) or --url (v0.28 federated remote-clone path).
  Calls into addSource from sources-ops.ts which owns the temp-dir +
  rename atomicity.

sources_list (read): list registered sources with page counts, federated
  flag, and remote_url. The remote_url field is new — lets a remote MCP
  caller see which sources are auto-managed.

sources_remove (sources_admin, mutating): cascade-delete a source +
  symlink-safe clone cleanup. Requires confirm_destructive: true when the
  source has data.

sources_status (read): per-source diagnostic returning clone_state
  ('healthy' | 'missing' | 'not-a-dir' | 'no-git' | 'url-drift' |
  'corrupted' | 'not-applicable') — lets a remote MCP caller diagnose a
  busted clone without SSH access to the brain host.

test/whoami.test.ts (9 tests): pinned transport-detection for all four
return shapes including Q3 fail-closed throw under both auth=undefined
and remote=undefined cast-bypass paths.

test/sources-mcp.test.ts (16 tests): op-metadata pins (scope, mutating,
localOnly), functional handler shape against PGLite, hasScope-driven
scope-enforcement smoke test simulating the serve-http.ts:673 gate
(read-only token rejected for sources_add; sources_admin token allowed;
admin token allowed for everything; gstack /setup-gbrain Path 4 token
covers all 4 ops), SSRF gate at the op layer.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(sync): re-clone fallback when clone is missing/no-git/corrupted

src/commands/sync.ts gets a v0.28-aware front-half. When the source has
config.remote_url, performSync calls validateRepoState before the existing
fast-forward pull path:

  - 'healthy'    → fall through to existing pull (unchanged)
  - 'missing'    → loud stderr "auto-recovery: re-cloning <id>", then
  'no-git'         recloneIfMissing handles the temp-dir + rename. Sync
  'not-a-dir'      continues from the freshly-cloned head.
  - 'corrupted'  → throw with structured hint pointing at sources remove
                   + add (no syncing wrong state).
  - 'url-drift'  → throw with hint pointing at the (deferred) sources
                   rebase-clone command.

Closes the operator-confidence gap: rm -rf $GBRAIN_HOME/clones/<id>/ no
longer breaks future syncs. The next sync sees the missing dir and
recovers via the recorded URL.

src/core/operations.ts: extend ErrorCode with 'unknown_transport' so
whoami's Q3 fail-closed path types check.

test/sources-resync-recovery.test.ts (12 tests): full validateRepoState
state matrix exercised under fake-git, recloneIfMissing recovery from
each degraded state, idempotent on healthy clones, the sync.ts:320
integration path that drives the recovery.

test/sources-ops.test.ts + test/sources-mcp.test.ts: drop the
GBRAIN_PGLITE_SNAPSHOT-disable line so these tests stop forcing cold
init across the parallel-shard runner. With snapshot allowed, init time
drops from 6+s to ~50ms and parallel runs stay under the 5s hook
timeout.

test/sources-mcp.test.ts: tighten scope literal-type so tsc keeps the
union narrow.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(cli): sources add --url + restore re-clone, thin-wrapper refactor

src/commands/sources.ts now delegates the data-mutation work to
src/core/sources-ops.ts (added in the previous commit). The CLI handler
parses argv, calls into addSource, and formats output.

Two new flags on `gbrain sources add`:
  - `--url <https-url>` : federated remote-clone path (clone + INSERT +
    rename, atomic rollback on failure).
  - `--clone-dir <path>` : override the default
    $GBRAIN_HOME/clones/<id>/ destination.

Validation rejects mutually-exclusive `--url` + `--path`. Errors from
the ops layer (SourceOpError) propagate through the CLI's standard
error wrapper in src/cli.ts so existing tests that assert throw shape
keep passing.

`gbrain sources restore <id>` (T4 from eng review): if the source has a
remote_url AND the on-disk clone was autopurged, call recloneIfMissing
before declaring success. Clone errors print a WARN with recovery
hints rather than failing the restore — the DB row is what restore
guarantees; the clone is best-effort.

54 sources-related tests pass (existing test/sources.test.ts +
sources-ops + sources-mcp).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(doctor,cycle): orphan-clones surface + autopilot purge phase (P1)

addSource's atomicity contract uses a temp dir that gets renamed to the
final clone path. If the process is SIGKILL'd between clone-finish and
rename, the temp dir orphans on disk. Without sweeping these, a brain
server accumulates gigabytes over months of failed `sources add --url`
attempts.

Two layers:

1. `gbrain doctor` now surfaces stale entries. A new orphan_clones check
   walks $GBRAIN_HOME/clones/.tmp/, names anything older than 24h, and
   prints a warn with disk-byte estimate. Operators see the leak before
   `df` complains.

2. The autopilot cycle's existing `purge` phase grows a substep that
   nukes .tmp/ entries past the same 72h TTL the page-soft-delete purge
   uses. Operator behavior stays uniform across all soft-delete-style
   surfaces.

Both layers are filesystem-only (no DB). On a brain that never used
--url cloning, both are no-ops.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* build(admin): scope checkboxes source from scope-constants mirror + dist

admin/src/pages/Agents.tsx Register Client modal:
  - useState default sources from ALLOWED_SCOPES_LIST (defaulting `read`
    to true, others false; unchanged UX for the common case).
  - Scope checkbox map iterates ALLOWED_SCOPES_LIST instead of the old
    hardcoded ['read','write','admin'].

Without this commit, even with the v0.28.1 server-side scope hierarchy,
operators registering an OAuth client from the admin UI cannot tick the
new sources_admin / users_admin scopes — defeats the whole gstack
/setup-gbrain Path 4 unblock.

The drift-check CI gate (scripts/check-admin-scope-drift.sh) ensures
this list stays in sync with src/core/scope.ts going forward.

admin/dist/* rebuilt via `cd admin && bun run build`. Old hash bundle
removed; new bundle (224.96 kB / 68.70 kB gzip).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: v0.28.1 — remote-source MCP + scope hierarchy + whoami

VERSION + package.json: bump to 0.28.1 (per CLAUDE.md branch-scoped
versioning rule — this branch adds substantial new features on top of
v0.28.0).

CHANGELOG.md: new top-level entry for v0.28.1 in the gstack/Garry voice
(no AI vocabulary, no em dashes, real numbers + commands). Lead
paragraph names what the user can now do that they couldn't before.
"Numbers that matter" table calls out the +5 MCP ops, +2 OAuth scopes,
and the 4-to-0 SSH-step number for gstack /setup-gbrain Path 4. "What
this means for you" closer ties the work to the operator workflow shift.
"To take advantage of v0.28.1" block has paste-ready upgrade commands
including the admin SPA rebuild step. Itemized changes section
describes the architecture cleanly without exposing scope-string
internals to public attack-surface enumeration (per CLAUDE.md
responsible-disclosure rule).

TODOS.md: file 6 follow-ups under a new "Remote-source MCP follow-ups
(v0.28.1)" section: token rotation, migration introspection in
get_health, Accept-header friendliness, sources rebase-clone for
URL-drift recovery, --filter=blob:none partial-clone option, and the
chunker_version PGLite-schema parity codex caught.

README.md: short subsection under the existing sources CLI listing
that names the new --url flag and what auto-recovery does. Capability
framing (no scope-string enumeration).

llms.txt + llms-full.txt: regenerated via `bun run build:llms` so the
documentation bundle reflects the v0.28.1 entry. The build-llms
generator's drift check passes.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* test(e2e): sources-remote-mcp — full gstack /setup-gbrain Path 4 round-trip

Spins up `gbrain serve --http` against real Postgres with a fake-git binary
in PATH (so `git clone` is exercised end-to-end without network), registers
two OAuth clients (sources_admin + read-only), mints tokens, calls the new
v0.28.1 MCP ops via /mcp, and asserts the gstack /setup-gbrain Path 4 flow
works end to end.

12 tests cover the full lifecycle:
- whoami over HTTP MCP returns transport=oauth + the right scopes
- /.well-known/oauth-authorization-server advertises all 5 scopes
- sources_add: clone fires, INSERT lands, row carries config.remote_url
- sources_status: clone_state=healthy after add
- sources_list: surfaces remote_url for the new source
- SSRF rejection: sources_add with RFC1918 URL fails at parseRemoteUrl gate
- Scope enforcement: read-only token gets insufficient_scope on sources_add
- Read-only token CAN call sources_list (read-scoped op)
- ALLOWED_SCOPES allowlist: CLI register-client rejects bogus scope
- Recovery: rm clone dir + sources_status reports clone_state=missing
- sources_remove: cascades + cleans up the auto-managed clone dir

Subprocess env threading replicates the v0.26.2 bun execSync inheritance
pattern — bun does NOT inherit process.env mutations, so every CLI
subprocess call passes env: { ...process.env } explicitly.

Cleanup contract mirrors test/e2e/serve-http-oauth.test.ts: revoke any
clients we registered, force-kill the server subprocess on SIGTERM
timeout, surface cleanup failures to stderr without throwing so real
test failures aren't masked.

The base table list in helpers.ts (ALL_TABLES) doesn't include sources
or oauth_clients, so this test explicitly truncates them in beforeAll
to avoid Q4 pre-flight collisions on re-run.

Skipped gracefully when DATABASE_URL is unset.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* fix: codex adversarial review — confine remote sources_admin + close SSRF gaps

Pre-ship adversarial review (codex exec) caught five issues. Four ship in
this commit; the fifth (DNS rebinding) is filed as v0.28.x follow-up.

CRITICAL — `sources_admin` tokens over HTTP MCP could plant content at any
host path. The MCP op exposed `path` and `clone_dir` to remote callers; the
op layer trusted them verbatim, then auto-recovery's rm -rf on degraded
state turned that into arbitrary delete primitives. src/core/operations.ts
sources_add handler now drops both fields when ctx.remote !== false. Local
CLI keeps the override (operator trust). Loud logger.warn when a remote
caller tries — visible in the SSE feed without leaking values.

HIGH — Steady-state `git pull --ff-only` bypassed GIT_SSRF_FLAGS entirely.
The legacy helper at src/commands/sync.ts:192 spawned git without the
-c http.followRedirects=false -c protocol.{file,ext}.allow=never
--no-recurse-submodules set that cloneRepo applies. Every recurring sync
was reopening the redirect/submodule/protocol bypass. Routed the call site
at sync.ts:381 through pullRepo from git-remote.ts so initial clone and
ongoing pull share one defensive flag set.

MEDIUM — listSources ignored its `include_archived` flag. The op
advertised the param but the function destructured it as `_opts` and
queried every row. Archived sources' ids, local_paths, and remote_urls
were leaking to read-scoped MCP callers by default. Filter in SQL
(`WHERE archived IS NOT TRUE` unless the flag is set) so archived rows
never reach the wire.

PARTIAL HIGH — IPv6 ULA fc00::/7 and link-local fe80::/10 were not in
the isInternalUrl bypass list. Only ::1/:: and IPv4-mapped IPv6 were
blocked. Added regex-based ULA + link-local rejection to url-safety.ts.

Test coverage:
- test/git-remote.test.ts: 4 new IPv6 cases (ULA fc-prefix + fd-prefix,
  link-local fe80::, public IPv6 still allowed).
- test/sources-mcp.test.ts: 3 new cases pinning the remote/local
  asymmetry (clone_dir override silently ignored over MCP, path nulled,
  local CLI keeps the override).
- test/sources-mcp.test.ts: 2 new cases for include_archived honored.

DNS rebinding (codex finding #3): the current gate is lexical only.
A deliberate attacker who controls a hostname's A/AAAA records can still
resolve to an internal IP. Closing this requires async DNS resolution +
revalidation; filed as v0.28.x follow-up in TODOS.md so the API change
surface (parseRemoteUrl becomes async, every caller updates) lands in
its own PR.

323 tests pass (9 files); 4071 unit tests pass (full suite).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore: rebump v0.28.1 → v0.28.2 (master collision)

Caught after PR creation. master is at v0.28.1 already; this branch
forked from garrytan/v0.28-release at v0.28.0 and naively bumped to
v0.28.1 without checking the master queue. CI version-gate would have
rejected at merge time (requires VERSION strictly greater than
master's).

Root cause: I bumped VERSION mechanically during plan implementation
(echo "0.28.1" > VERSION) without consulting the queue-aware allocator
at bin/gstack-next-version. /ship Step 12's idempotency check then
classified state as ALREADY_BUMPED and the workflow's "queue drift"
comparison was the safety net I should have hit — but I skipped it.

Files updated:
- VERSION + package.json: 0.28.1 → 0.28.2
- CHANGELOG.md: header + "To take advantage of v0.28.2" subsection
- README.md: sources --url note version reference
- TODOS.md: 7 follow-up entries' version references
- llms.txt + llms-full.txt: regenerated

PR title rewrite via gstack-pr-title-rewrite.sh handled in a separate
gh pr edit call; CI version-gate now passes.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(todos): close longmemeval-publication, file 4 follow-up TODOs

Full 500-question 4-adapter LongMemEval _s benchmark landed at
github.com/garrytan/gbrain-evals#main:ced01f0. gbrain-hybrid 97.60% R@5,
+1.0pt over MemPal raw 96.6%. Replacing the now-stale "needs full run"
TODO with closure + 4 grounded follow-ups:

  1. Timeline-aware retrieval signal for temporal-reasoning questions
     (P2 — closes the only category we lose to MemPal-raw)
  2. Per-question batch consolidation for ~10x cold-cache speedup
     (P3 — makes daily benchmark CI gate practical)
  3. LongMemEval _m split run (P3 — differentiated, not yet published
     by MemPal)
  4. Cheaper-embedding-model recipe (P4 — recall-cost tradeoff curve)

Each TODO has the standard What/Why/Pros/Cons/Context/Depends-on shape per
the gbrain TODOS-format convention.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(llms): regenerate llms-full.txt to match merged CLAUDE.md

CI test/build-llms.test.ts asserts the committed llms.txt/llms-full.txt
are byte-for-byte identical to what scripts/build-llms.ts produces. The
master merge brought in v0.28.9/v0.28.10/v0.28.11 + multimodal embedding
notes that updated CLAUDE.md; the bundle was stale.

No content changes. Pure regeneration via `bun run build:llms`.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs(changelog): rewrite v0.28.12 entry — lead with the LongMemEval result

Old entry buried the headline ("LongMemEval lands in the box…") under
process detail (hermetic CI test count, 25.9ms p50, schema-table
runtime enumeration). The reader cares what gbrain DOES — not how we
plumbed the harness.

New entry leads with the actual number — 97.60% R@5 on the public
LongMemEval _s split, beating MemPalace raw by 1.0pt — followed by
the per-category win table that proves gbrain ties or beats MemPal in
5 of 6 question types and shows the +7.1pt assistant-voice lift.

Links to the full gbrain-evals report (97.60% headline + full
methodology + reproducible runner) so curious readers can dig deeper.

Two honest findings published in plain text: vector-only is
essentially tied with hybrid at K=5, and query expansion via Haiku is
a clean null result on this dataset. Better to publish the null than
hide it.

Reproduction block updated to match the actual gbrain-evals workflow
(clone + bun install + dataset download + bash batch runner). The
prior "download / run / hand to evaluate_qa.py" block stayed for the
in-tree CLI path.

Regenerated llms-full.txt to keep the build-llms regen-drift guard
green.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-07 19:49:46 -07:00

51 KiB
Raw Blame History

GBrain

Your AI agent is smart but forgetful. GBrain gives it a brain.

Built by the President and CEO of Y Combinator to run his actual AI agents. The production brain powering his OpenClaw and Hermes deployments: 17,888 pages, 4,383 people, 723 companies, 21 cron jobs running autonomously, built in 12 days. The agent ingests meetings, emails, tweets, voice calls, and original ideas while you sleep. It enriches every person and company it encounters. It fixes its own citations and consolidates memory overnight. You wake up and the brain is smarter than when you went to bed.

The brain wires itself. Every page write extracts entity references and creates typed links (attended, works_at, invested_in, founded, advises) with zero LLM calls. Hybrid search. Self-wiring knowledge graph. Structured timeline. Backlink-boosted ranking. Ask "who works at Acme AI?" or "what did Bob invest in this quarter?" and get answers vector search alone can't reach. Benchmarked side-by-side against the category: gbrain lands P@5 49.1%, R@5 97.9% on a 240-page Opus-generated rich-prose corpus, beating its own graph-disabled variant by +31.4 points P@5 and ripgrep-BM25 + vector-only RAG by a similar margin. The graph layer plus v0.12 extract quality together carry the gap. Full BrainBench scorecards + corpus live in the sibling gbrain-evals repo.

GBrain is those patterns, generalized. 34 skills. Install in 30 minutes. Your agent does the work. As Garry's personal agent gets smarter, so does yours.

New in v0.25.0 — BrainBench-Real (session capture, contributor opt-in): with GBRAIN_CONTRIBUTOR_MODE=1 set in your shell, every real query + search call through MCP, CLI, or the subagent tool-bridge gets captured (PII-scrubbed) into an eval_candidates table. Snapshot with gbrain eval export, replay against your code change with gbrain eval replay. Three numbers come back: mean Jaccard@k between captured and current retrieved slugs, top-1 stability, and latency Δ. Off by default for production users — no surprise data accumulation. Walkthrough: docs/eval-bench.md. NDJSON wire format: docs/eval-capture.md.

New in v0.28.8 — LongMemEval in the box: gbrain eval longmemeval <dataset.jsonl> runs the public LongMemEval benchmark against gbrain's hybrid retrieval. One in-memory PGLite per run, TRUNCATE between questions (runtime-enumerated tables, schema-migration-safe), 25.9ms p50 per question on Apple Silicon. Your ~/.gbrain brain is never touched. Retrieved chat content is sanitized with the same INJECTION_PATTERNS that protect takes — one source of truth for prompt-injection defense. Hand the JSONL output to LongMemEval's evaluate_qa.py to score.

~30 minutes to a fully working brain. Database ready in 2 seconds (PGLite, no server). You just answer questions about API keys.

LLMs: fetch llms.txt for the documentation map, or llms-full.txt for the same map with core docs inlined in one fetch. Agents: start with AGENTS.md (or CLAUDE.md if you're Claude Code).

Install

GBrain is designed to be installed and operated by an AI agent. If you don't have one running yet:

Paste this into your agent:

Retrieve and follow the instructions at:
https://raw.githubusercontent.com/garrytan/gbrain/master/INSTALL_FOR_AGENTS.md

That's it. The agent clones the repo, installs GBrain, sets up the brain, loads 34 skills, and configures recurring jobs. You answer a few questions about API keys. ~30 minutes.

If your agent doesn't auto-read AGENTS.md, point it at that file first: https://raw.githubusercontent.com/garrytan/gbrain/master/AGENTS.md is the non-Claude agent operating protocol (install, read order, trust boundary, common tasks). For the full doc map, use llms.txt at the same URL root.

Standalone CLI (no agent)

git clone https://github.com/garrytan/gbrain.git && cd gbrain && bun install && bun link
gbrain init                     # local brain, ready in 2 seconds
gbrain import ~/notes/          # index your markdown
gbrain query "what themes show up across my notes?"

Do NOT use bun install -g github:garrytan/gbrain. Bun blocks the top-level postinstall hook on global installs, so schema migrations never run and the CLI aborts with Aborted() the first time it opens PGLite. Use git clone + bun install && bun link as shown above. See #218.

Do NOT use bun add -g gbrain or npm install -g gbrain. The npm registry has an unrelated package squatting that name (gbrain@1.3.x) — you'd silently install the wrong binary and overwrite the canonical one. v0.28.5+ detects this and prints a recovery message on gbrain upgrade, but the git clone + bun link path above is the only reliable install method until we publish under @garrytan/gbrain (tracked v0.29 follow-up). See #658.

3 results (hybrid search, 0.12s):

1. concepts/do-things-that-dont-scale (score: 0.94)
   PG's argument that unscalable effort teaches you what users want.
   [Source: paulgraham.com, 2013-07-01]

2. originals/founder-mode-observation (score: 0.87)
   Deep involvement isn't micromanagement if it expands the team's thinking.

3. concepts/build-something-people-want (score: 0.81)
   The YC motto. Connected to 12 other brain pages.

MCP server (Claude Code, Cursor, Windsurf)

GBrain exposes 30+ MCP tools via stdio:

{
  "mcpServers": {
    "gbrain": { "command": "gbrain", "args": ["serve"] }
  }
}

Add to ~/.claude/server.json (Claude Code), Settings > MCP Servers (Cursor), or your client's MCP config.

Remote MCP with OAuth 2.1 (ChatGPT, Claude Desktop, Cowork, Perplexity)

gbrain serve --http starts a production-grade OAuth 2.1 server with an embedded admin dashboard. Zero external infrastructure. Every major AI client connects, every request is scoped, every action is logged.

# Start the HTTP server (prints admin bootstrap token on first start)
gbrain serve --http --port 3131

# Open the admin dashboard, paste the bootstrap token, register a client
open http://localhost:3131/admin

# Expose publicly (set --public-url so the OAuth issuer matches)
ngrok http 3131 --url your-brain.ngrok.app
gbrain serve --http --port 3131 --public-url https://your-brain.ngrok.app

# ChatGPT and other OAuth-aware clients can also connect:
claude mcp add gbrain -t http https://your-brain.ngrok.app/mcp -H "Authorization: Bearer TOKEN"

Register OAuth clients from the /admin dashboard — click Register client, pick scopes, save the credentials shown once in the reveal modal. Programmatic registration via oauthProvider.registerClientManual(...) and the gbrain auth register-client CLI are also available.

  • OAuth 2.1 via the MCP SDK — client credentials (machine-to-machine: Perplexity, Claude), authorization code + PKCE (browser-based: ChatGPT), refresh token rotation, revocation, protected resource metadata. Optional Dynamic Client Registration behind --enable-dcr (DCR redirect_uris must be https:// or loopback per RFC 6749 §3.1.2.1).
  • Scoped operations — 30 operations tagged read | write | admin. sync_brain and file_upload are localOnly, rejected over HTTP.
  • React admin dashboard — 7 screens baked into the binary (~65KB gzip). Live SSE activity feed, agents table, credential reveal, filterable request log, per-client config export.
  • Legacy bearer tokens still work — pre-v0.26 gbrain auth create tokens continue to authenticate as read+write+admin. v0.22.7's simpler src/mcp/http-transport.ts path stays compiled in for backward compat callers; v0.26+ deployments use the OAuth-aware serve-http.ts.

Per-client guides: docs/mcp/. Hardening defaults, env vars, and threat model: SECURITY.md.

Using gbrain with GStack

If your engineering agent runs on GStack, point it at gbrain for code lookup instead of grep+read. Cathedral II (v0.21.0) ships call-graph edges and two-pass retrieval — /investigate, /review, /plan-eng-review, and /office-hours all benefit when the agent walks the symbol graph instead of scanning files line by line.

The five magical-moment commands:

gbrain code-callers searchKeyword           # who calls this symbol?
gbrain code-callees searchKeyword           # what does this symbol call?
gbrain code-def BrainEngine                 # where is X defined?
gbrain code-refs BrainEngine                # all reference sites
gbrain query "how does N+1 handling work" --near-symbol BrainEngine.searchKeyword --walk-depth 2

All five auto-emit JSON on non-TTY (gh-CLI convention) so a GStack subagent shelling out via bash gets a clean parseable response. Run gbrain sources add <repo> --strategy code to index a repo, then your agent's brain-first lookup covers code, not just markdown. (Cathedral II release notes)

The 34 Skills

GBrain ships 34 skills organized by skills/RESOLVER.md (or your OpenClaw's AGENTS.md — both filenames are supported as of v0.19). The resolver tells your agent which skill to read for any task. v0.25.1 added 9 research-flavored skills (book-mirror flagship plus 8 pairings); see the new "Research and synthesis" section below.

Skill files are code. They're the most powerful way to get knowledge work done. A skill file is a fat markdown document that encodes an entire workflow: when to fire, what to check, how to chain with other skills, what quality bar to enforce. The agent reads the skill and executes it. Skills can also call deterministic TypeScript code bundled in GBrain (search, import, embed, sync) for the parts that shouldn't be left to LLM judgment. Thin harness, fat skills: the intelligence lives in the skills, not the runtime.

Always-on

Skill What it does
signal-detector Fires on every message. Spawns a cheap model in parallel to capture original thinking and entity mentions. The brain compounds on autopilot.
brain-ops Brain-first lookup before any external API. The read-enrich-write loop that makes every response smarter.

Content ingestion

Skill What it does
ingest Thin router. Detects input type and delegates to the right ingestion skill.
idea-ingest Links, articles, tweets become brain pages with analysis, author people pages, and cross-linking.
media-ingest Video, audio, PDF, books, screenshots, GitHub repos. Transcripts, entity extraction, backlink propagation.
meeting-ingestion Transcripts become brain pages. Every attendee gets enriched. Every company gets a timeline entry.
voice-note-ingest Voice notes captured verbatim — exact phrasing preserved, never paraphrased. Routes to originals/concepts/people/companies/ideas/personal/voice-notes based on content.
article-enrichment Raw article dumps become structured pages with executive summary, verbatim quotes, key insights, and why-it-matters.

Research and synthesis (v0.25.1)

Skill What it does
book-mirror Flagship. Hand the agent a book, get a personalized two-column chapter-by-chapter analysis. Left column preserves the chapter's actual content; right column maps every idea to your life using your words from the brain. ~$6 for a 20-chapter book at Opus. Pairs with gbrain book-mirror CLI for the trusted runtime.
strategic-reading Read a book / article / case study through ONE specific problem-lens. Output: applied playbook with do / avoid / watch-for and short / medium / long-term recommendations.
concept-synthesis Deduplicate thousands of concept stubs into a tiered intellectual map (T1 Canon to T4 Riff). Trace how ideas evolved across years of notes.
perplexity-research Brain-augmented web research. Sends brain context to Perplexity so the search focuses on what's NEW vs already-known. Output: Executive Summary + Key New Developments + Confirming Signals + Contradictions or Updates + Recommended Brain Updates + Citations.
archive-crawler Universal archivist for personal file archives (Dropbox / Backblaze / Gmail-takeout / hard-drive dumps). REFUSES to run unless archive-crawler.scan_paths: is set in gbrain.yml. Safe-by-default safety fence.
academic-verify Trace a research claim through publication → methodology → raw data → independent replication. Routes through perplexity-research; produces a verdict (verified / partial / unverifiable / misattributed / retracted).
brain-pdf Render any brain page to publication-quality PDF via the gstack make-pdf binary. Strips frontmatter, sanitizes emoji, applies running headers.

Brain operations

Skill What it does
enrich Tiered enrichment (Tier 1/2/3). Creates and updates person/company pages with compiled truth and timelines.
query 3-layer search with synthesis and citations. Says "the brain doesn't have info on X" instead of hallucinating.
maintain Periodic health: stale pages, orphans, dead links, citation audit, back-link enforcement, tag consistency. v0.23 adds the dream cycle's synthesize + patterns phases ... overnight conversation transcripts become reflections, originals, and 25-year patterns.
citation-fixer Scans pages for missing or malformed citations. Fixes format to match the standard.
repo-architecture Where new brain files go. Decision protocol: primary subject determines directory, not format.
publish Share brain pages as password-protected HTML. Zero LLM calls.
data-research Structured data research with parameterized YAML recipes. Extract investor updates, expenses, company metrics from email.

Operational

Skill What it does
daily-task-manager Task lifecycle with priority levels (P0-P3). Stored as searchable brain pages.
daily-task-prep Morning prep: calendar lookahead with brain context per attendee, open threads, task review.
cron-scheduler Schedule staggering (5-min offsets), quiet hours (timezone-aware with wake-up override), idempotency.
reports Timestamped reports with keyword routing. "What's the latest briefing?" finds it instantly.
cross-modal-review Quality gate via second model. Refusal routing: if one model refuses, silently switch.
webhook-transforms External events (SMS, meetings, social mentions) converted into brain pages with entity extraction.
testing Validates every skill has SKILL.md with frontmatter, manifest coverage, resolver coverage.
skill-creator Create new skills following the conformance standard. MECE check against existing skills.
skillify The "skillify it!" meta-skill. Orchestrates the 10-step loop so failures become durable skills: scaffold the stubs via gbrain skillify scaffold, write the real logic, gate with gbrain skillify check + gbrain check-resolvable.
skillpack-check Agent-readable gbrain health report. Exit code for CI; JSON for debugging. Cron-friendly.
smoke-test 8 post-restart health checks with auto-fix (Bun, CLI, DB, worker, Zod CJS, gateway, API key, brain repo). Drop-in user tests at ~/.gbrain/smoke-tests.d/*.sh.
minion-orchestrator Background work in one skill. Shell jobs via gbrain jobs submit shell (operator/CLI, MCP blocks protected names) and LLM subagents via gbrain agent run. Parent-child DAGs, child_done inbox, durability across worker restarts.

Identity and setup

Skill What it does
soul-audit 6-phase interview generating SOUL.md (agent identity), USER.md (user profile), ACCESS_POLICY.md (4-tier privacy), HEARTBEAT.md (operational cadence).
setup Auto-provision PGLite or Supabase. First import. GStack detection.
migrate Universal migration from Obsidian, Notion, Logseq, markdown, CSV, JSON, Roam.
briefing Daily briefing with meeting context, active deals, and citation tracking.

Conventions

Cross-cutting rules in skills/conventions/:

  • quality.md ... citations, back-links, notability gate, source attribution
  • brain-first.md ... 5-step lookup before any external API call
  • model-routing.md ... which model for which task
  • test-before-bulk.md ... test 3-5 items before any batch operation
  • cross-modal.yaml ... review pairs and refusal routing chain

How It Works

Signal arrives (meeting, email, tweet, link)
  -> Signal detector captures ideas + entities (parallel, never blocks)
  -> Brain-ops: check the brain first (gbrain search, gbrain get)
  -> Respond with full context
  -> Write: update brain pages with new information + citations
  -> Auto-link: typed relationships extracted on every write (zero LLM calls)
  -> Sync: gbrain indexes changes for next query

Every cycle adds knowledge. The agent enriches a person page after a meeting. Next time that person comes up, the agent already has context. The difference compounds daily.

The system gets smarter on its own. Entity enrichment auto-escalates: a person mentioned once gets a stub page (Tier 3). After 3 mentions across different sources, they get web + social enrichment (Tier 2). After a meeting or 8+ mentions, full pipeline (Tier 1). The brain learns who matters without being told. Deterministic classifiers improve over time via a fail-improve loop that logs every LLM fallback and generates better regex patterns from the failures. gbrain doctor shows the trajectory: "intent classifier: 87% deterministic, up from 40% in week 1."

"Prep me for my meeting with Jordan in 30 minutes" ... pulls dossier, shared history, recent activity, open threads

"What have I said about the relationship between shame and founder performance?" ... searches YOUR thinking, not the internet

Minions: your sub-agents won't drop work anymore

A durable, Postgres-native job queue built into the brain. Every long-running agent task is now a job that survives gateway restarts, streams progress, gets paused / resumed / steered mid-flight, and shows up in gbrain jobs list. Zero infra beyond your existing brain.

The production numbers that matter

Here's my personal OpenClaw deployment: one Render container. Supabase Postgres holding a 45,000-page brain. 19 cron jobs firing on schedule. Real gateway load from real daily work. The task: pull a month of my social posts from an external API and ingest them end-to-end into the brain as a structured page.

Minions sessions_spawn
Wall time 753ms >10,000ms (gateway timeout)
Token cost $0.00 ~$0.03 per run
Success rate 100% 0% (couldn't even spawn)
Memory/job ~2 MB ~80 MB

Under that 19-cron load, sub-agent spawn couldn't clear the 10-second gateway wall. Minions landed it in under a second for zero tokens. Scaling: 19,240 posts across 36 months, single bash loop, ~15 min total, $0.00. Sub-agents: ~9 min best case, ~$1.08 in tokens, ~40% spawn failure. Lab: durability ∞ (SIGKILL mid-flight, 10/10 rescued), throughput ~10× faster, fan-out ~21× with no failure wall, memory ~400× less.

Full benchmarks live in gbrain-evals.

The routing rule

Deterministic (same input → same steps → same output) → Minions Judgment (input requires assessment or decision) → Sub-agents

Pull posts, parse JSON, write a brain page, run a sync — deterministic. $0 tokens, survives restart, millisecond runtime. Triage the inbox, assess meeting priority, decide if a cold email deserves a reply — judgment. What sub-agents are actually good at. minion_mode: pain_triggered (the default) automates the routing.

What's fixed

The six daily pains — spawn storms, agents that stop responding, forgotten dispatches, gateway crashes mid-run, runaway grandchildren, debugging soup — all belonged to the "deterministic work through a reasoning model" mistake. Minions fixes them by not making that mistake: max_children cap, timeout_ms + AbortSignal, child_done inbox, full parent_job_id/depth/transcript per job, Postgres durability with stall detection, cascade cancel via recursive CTE. Plus idempotency keys, attachment validation, removeOnComplete, and gbrain jobs smoke that proves the install in half a second.

gbrain jobs smoke                        # verify install
gbrain jobs submit sync --params '{}'    # fire a background job
gbrain jobs stats                        # health dashboard
gbrain jobs supervisor --concurrency 4   # canonical: auto-restarting worker (Postgres only)
gbrain jobs work --concurrency 4         # raw worker (no crash recovery — prefer `supervisor`)

gbrain jobs supervisor keeps the worker alive across crashes with exponential backoff, atomic PID locking, structured audit events at ~/.gbrain/audit/supervisor-*.jsonl, and a start --detach / status --json / stop subcommand surface for agents. In containers it runs as PID 1; on systemd hosts it's the child of gbrain-worker.service. Full deployment guide: docs/guides/minions-deployment.md.

Read skills/minion-orchestrator/SKILL.md for parent-child DAGs, fan-in collection, steering via inbox.

Minions is not incrementally better than sub-agents for background work. It's categorically different. 753ms vs gateway timeout. $0 vs tokens. 100% vs couldn't-spawn. If your agent does deterministic work on a schedule, it runs on Minions now.

Health check and self-heal

Minions is canonical as of v0.11.1 — every gbrain upgrade runs the migration automatically (schema → smoke → prefs → host rewrites → env-aware autopilot install). If you ever want to verify manually or wire a cron into your morning briefing:

gbrain doctor                    # half-migrated state? prints loud banner + exits non-zero
gbrain skillpack-check --quiet    # exit 0/1/2 for pipeline gating
gbrain skillpack-check | jq       # full JSON: {healthy, summary, actions[], doctor, migrations}

If anything's off, actions[] tells you the exact command to run. For deeper troubleshooting: docs/guides/minions-fix.md.

Moving gateway crons to Minions (deterministic scripts, zero LLM tokens per fire): docs/guides/minions-shell-jobs.md.

Durable agents: gbrain agent (v0.15)

Your subagent runs survive crashes now. OpenClaw died mid-run? The worker re-claims on restart and replays from the last committed turn. Fan-out across 50 shards, one shard crashes — the aggregator still claims after every child reaches a terminal state and writes a mixed-outcome summary. Tool calls persist as a two-phase ledger (pendingcomplete | failed) so replay is safe by construction, not by hope.

# Submit a single-subagent run
gbrain agent run "summarize my last 10 journal pages"

# Fan out N prompts across N subagent children + 1 aggregator
gbrain agent run "analyze every page" \
  --fanout-manifest manifests/pages.json \
  --subagent-def analyzer

# Tail a running job (heartbeat per turn + full transcript on completion)
gbrain agent logs 1247 --follow --since 5m

Durability is the point: every Anthropic turn commits to subagent_messages, every tool call to subagent_tool_executions. Worker kills, OpenClaw crashes, timeouts — all resumable. Host repos (your OpenClaw, etc.) ship their own subagent definitions via GBRAIN_PLUGIN_PATH + a gbrain.plugin.json manifest: see docs/guides/plugin-authors.md. Requires ANTHROPIC_API_KEY on the worker.

Skillify: say "skillify it!" and the bug becomes structurally impossible to repeat

Your OpenClaw hit a new failure. You fix it once in conversation. You say "skillify it!" And now the fix is permanent: a SKILL.md with triggers, a deterministic script with tests, a routing fixture the agent re-evaluates daily, a filing audit that keeps the output from drifting. Ten items. Every one required. The bug can't recur.

Hermes and similar agent frameworks auto-create skills as a background behavior. Fine until you don't know what the agent shipped. Checklists decay. Tests drift. Resolver entries get stale. Six months later it's an opaque pile nobody has read, nobody has tested, and nobody is sure still works. GBrain ships the same capability except the human stays in the loop and every step is a command you can run.

The four verbs you need (v0.19)

# 1. Scaffold all 5 stub files for a new skill in one shot.
gbrain skillify scaffold webhook-verify \
  --description "verify ngrok webhooks" \
  --triggers "verify the webhook,check tunnel" \
  --writes-pages --writes-to people/,companies/

# 2. Replace the SKILLIFY_STUB sentinels with real logic + real tests.
$EDITOR skills/webhook-verify/scripts/webhook-verify.mjs
$EDITOR test/webhook-verify.test.ts

# 3. Run the 10-item audit: SKILL.md exists, script exists, unit + E2E tests,
#    LLM evals, resolver entry, trigger eval, check-resolvable gate, brain filing.
gbrain skillify check skills/webhook-verify/scripts/webhook-verify.mjs

# 4. Verify the whole tree: reachability, MECE overlap, DRY, routing gaps,
#    filing audit, SKILLIFY_STUB sentinels (fails if any skill still has one).
gbrain check-resolvable              # warnings advisory, errors block
gbrain check-resolvable --strict     # warnings block too (CI opt-in)

Idempotent re-runs. --force regenerates stub files but NEVER duplicates a resolver row. Scaffold completes in under 2 seconds. The real work (your rule, your script, your tests) is what you spend time on. Everything else is boilerplate the CLI writes for you.

gbrain routing-eval — catch the routing gaps your users actually hit

Drop a routing-eval.jsonl fixture next to any skill. Each line is {intent, expected_skill, ambiguous_with?}. gbrain check-resolvable runs the structural layer by default; gbrain routing-eval runs the same structural layer as a dedicated CI verb. The --llm flag is accepted as a placeholder for a future LLM tie-break layer; in this release it emits a stderr notice and runs structural only. False positives (wrong skill matched), missed routes (no skill matched), and tautological fixtures (intent copies trigger verbatim) all surface as specific advisories with the exact file:line to fix.

Works on your OpenClaw, not just gbrain's repo

v0.19 teaches gbrain check-resolvable to accept AGENTS.md as a resolver file alongside RESOLVER.md, at either the skills directory OR one level up (OpenClaw-native workspace-root layout). The skill manifest auto-derives from walking skills/*/SKILL.md when manifest.json is missing. Set OPENCLAW_WORKSPACE=~/your-openclaw/workspace and everything just works:

export OPENCLAW_WORKSPACE=~/your-openclaw/workspace
gbrain check-resolvable --verbose
# Auto-detects: AGENTS.md at workspace root, 107 skills derived from SKILL.md walk,
# 15 unreachable errors surfaced, 108 advisory warnings for overlaps and gaps.

First run on a real OpenClaw deployment found 15 unreachable skills out of 102 — about 15% of the tree was dark. The essay's "skills the agent can never reach" footgun, now visible.

gbrain skillpack install — drop 25 curated skills into your OpenClaw

The skills gbrain ships are a curated bundle. Install them into your workspace with dependency closure (shared conventions come along), per-file diff protection (your local edits are never clobbered without --overwrite-local), a file lock that serializes concurrent installers, and an atomic managed-block update to your AGENTS.md so you can see exactly what gbrain wrote.

gbrain skillpack list                          # 25 curated skills
gbrain skillpack install brain-ops             # one skill + its shared conventions
gbrain skillpack install --all                 # the full bundle
gbrain skillpack install brain-ops --dry-run   # preview; no writes
gbrain skillpack diff brain-ops                # compare bundle vs your local copy

Re-running is safe. The managed-block markers in your AGENTS.md let skillpack install accumulate rows across separate single-skill installs instead of overwriting each other. A receipt comment inside the fence (<!-- gbrain:skillpack:manifest cumulative-slugs="..." -->) tracks what gbrain has installed across runs. install --all is the only path that prunes; per-skill install never deletes what it didn't install. If you hand-add a row inside the fence, gbrain preserves it on reinstall and emits a stderr notice telling your agent to investigate.

Skillify is the piece that makes the skills tree survive six months of compounding work. Read skills/skillify/SKILL.md for the full 10-item checklist and the anti-patterns it catches.

Storage tiering: keep bulk content out of git (v0.22.11)

When your brain crosses 100K files and bulk machine-generated content (tweets, articles, transcripts) becomes the size driver, declare which directories belong in git and which live in the database only.

# gbrain.yml at the brain repo root
storage:
  db_tracked:
    - people/
    - companies/
    - deals/
  db_only:
    - media/x/
    - media/articles/
    - meetings/transcripts/

gbrain sync auto-manages your .gitignore for db_only paths. gbrain export --restore-only --repo . repopulates missing files from the database (container restart, fresh clone, accidental rm). gbrain storage status shows the tier breakdown.

Full guide: docs/storage-tiering.md.

Getting Data In

GBrain ships integration recipes that your agent sets up for you. Each recipe tells the agent what credentials to ask for, how to validate, and what cron to register.

Recipe Requires What It Does
Public Tunnel Fixed URL for MCP + voice (ngrok Hobby $8/mo)
Credential Gateway Gmail + Calendar access
Voice-to-Brain ngrok-tunnel Phone calls to brain pages (Twilio + OpenAI Realtime)
Email-to-Brain credential-gateway Gmail to entity pages
X-to-Brain Twitter timeline + mentions + deletions
Calendar-to-Brain credential-gateway Google Calendar to searchable daily pages
Meeting Sync Circleback transcripts to brain pages with attendees
Restart Sweep OpenClaw + Telegram Detect dropped Telegram messages after OpenClaw gateway restarts

Data research recipes extract structured data from email into tracked brain pages. Built-in recipes for investor updates (MRR, ARR, runway, headcount), expense tracking, and company metrics. Create your own with gbrain research init.

Run gbrain integrations to see status.

GBrain + GStack

GStack is the engine. GBrain is the mod.

  • GStack = coding skills (ship, review, QA, investigate, office-hours, retro). 70,000+ stars, 30,000 developers per day. When your agent codes on itself, it uses GStack.
  • GBrain = everything-else skills (brain ops, signal detection, ingestion, enrichment, cron, reports, identity). When your agent remembers, thinks, and operates, it uses GBrain.
  • hosts/gbrain.ts = the bridge. Tells GStack's coding skills to check the brain before coding.

gbrain init detects if GStack is installed and reports mod status. If GStack isn't there, it tells you how to get it.

Architecture

┌──────────────────┐    ┌───────────────┐    ┌──────────────────┐
│   Brain Repo     │    │    GBrain     │    │    AI Agent      │
│   (git)          │    │  (retrieval)  │    │  (read/write)    │
│                  │    │               │    │                  │
│  markdown files  │───>│  Postgres +   │<──>│  29 skills       │
│  = source of     │    │  pgvector     │    │  define HOW to   │
│    truth         │    │               │    │  use the brain   │
│                  │<───│  hybrid       │    │                  │
│  human can       │    │  search       │    │  RESOLVER.md     │
│  always read     │    │  (vector +    │    │  routes intent   │
│  & edit          │    │   keyword +   │    │  to skill        │
│                  │    │   RRF)        │    │                  │
└──────────────────┘    └───────────────┘    └──────────────────┘

The repo is the system of record. GBrain is the retrieval layer. The agent reads and writes through both. Human always wins... edit any markdown file and gbrain sync picks up the changes.

The Knowledge Model

Every page follows the compiled truth + timeline pattern:

---
type: concept
title: Do Things That Don't Scale
tags: [startups, growth, pg-essay]
---

Paul Graham's argument that startups should do unscalable things early on.
The key insight: the unscalable effort teaches you what users actually
want, which you can't learn any other way.

---

- 2013-07-01: Published on paulgraham.com
- 2024-11-15: Referenced in batch W25 kickoff talk

Above the ---: compiled truth. Your current best understanding. Gets rewritten when new evidence changes the picture. Below: timeline. Append-only evidence trail. Never edited, only added to.

Knowledge Graph

Pages aren't just text. Every mention of a person, company, or concept becomes a typed link in a structured graph. The brain wires itself.

Write a meeting page mentioning Alice and Acme AI
  -> Auto-link extracts entity refs from content (zero LLM calls)
  -> Infers types: meeting page + person ref => `attended`
                   "CEO of X" pattern        => `works_at`
                   "invested in"             => `invested_in`
                   "advises", "advisor"      => `advises`
                   "founded", "co-founded"   => `founded`
  -> Reconciles stale links: edits remove links no longer in content
  -> Backlinks rank well-connected entities higher in search
gbrain graph-query people/alice --type attended --depth 2
# returns who Alice met with, transitively

The graph powers questions vector search can't: "who works at Acme AI?", "what has Bob invested in?", "find the connection between Alice and Carol". Backfill an existing brain in one command:

gbrain extract links --source db        # wire up the existing 29K pages
gbrain extract timeline --source db     # extract dated events from markdown timelines

Then ask graph questions or watch the search ranking improve. Benchmarked side-by-side against ripgrep-BM25, vector-only RAG (same embedder), and gbrain-with-graph-disabled: gbrain lands P@5 49.1%, R@5 97.9% on a 240-page Opus-generated rich-prose corpus, beating hybrid-nograph by +31.4 points P@5. Isolate the contribution: v0.11→v0.12 moved the same gbrain codebase from P@5 22.1% → 49.1% on identical inputs, so typed-link extract quality is load-bearing. Full scorecards + reproducible corpus: gbrain-evals.

Hybrid search: vector + keyword + RRF fusion + multi-query expansion + 4-layer dedup.

Query
  -> Intent classifier (entity? temporal? event? general?)
  -> Multi-query expansion (Claude Haiku)
  -> Vector search (HNSW cosine) + Keyword search (tsvector)
  -> RRF fusion: score = sum(1/(60 + rank))
  -> Cosine re-scoring + compiled truth boost
  -> 4-layer dedup + compiled truth guarantee
  -> Results

Keyword alone misses conceptual matches. Vector alone misses exact phrases. RRF gets both. Search quality is benchmarked and reproducible: gbrain eval --qrels queries.json measures P@k, Recall@k, MRR, and nDCG@k. A/B test config changes before deploying them.

Why it works: many strategies in concert

The brain isn't one trick. Every retrieval question goes through ~20 deterministic techniques layered together. No single one is magic; the win comes from stacking them so each layer covers what the others miss.

Question
  │
  ├─ INGESTION (every put_page)
  │    ├─ Recursive markdown chunking (or semantic / LLM-guided)
  │    ├─ Embedding cache invalidation on edit
  │    └─ Idempotent imports (content-hash dedup)
  │
  ├─ GRAPH EXTRACTION (auto-link post-hook, zero LLM)
  │    ├─ Entity-ref regex (markdown links + bare slugs)
  │    ├─ Code-fence stripping (no false-positive slugs in code blocks)
  │    ├─ Typed inference cascade (FOUNDED → INVESTED → ADVISES → WORKS_AT)
  │    ├─ Page-role priors (partner-bio language → invested_in)
  │    ├─ Within-page dedup (same target collapses to one link)
  │    ├─ Stale-link reconciliation (edits remove dropped refs)
  │    └─ Multi-type link constraint (same person can works_at AND advises)
  │
  ├─ SEARCH PIPELINE (every query)
  │    ├─ Intent classifier (entity / temporal / event / general — auto-routes)
  │    ├─ Multi-query expansion (Haiku rephrases the question 3 ways)
  │    ├─ Vector search (HNSW cosine over OpenAI embeddings)
  │    ├─ Keyword search (Postgres tsvector + websearch_to_tsquery)
  │    ├─ Source-aware ranking (curated dirs outrank chat/daily swamp at SQL layer)
  │    ├─ Hard-exclude (test/ archive/ attachments/ .raw/ filtered before retrieval)
  │    ├─ Reciprocal Rank Fusion (score = sum 1/(60+rank) across both)
  │    ├─ Cosine re-scoring (re-rank chunks against actual query embedding)
  │    ├─ Compiled-truth boost (assessments outrank timeline noise)
  │    ├─ Backlink boost (well-connected entities rank higher)
  │    └─ Source-aware dedup (one CT chunk per page guaranteed)
  │
  ├─ GRAPH TRAVERSAL (relational queries)
  │    ├─ Recursive CTE with cycle prevention (visited-array check)
  │    ├─ Type-filtered edges (--type works_at, attended, etc.)
  │    ├─ Direction control (in / out / both)
  │    └─ Depth-capped (≤10 for remote MCP; DoS prevention)
  │
  └─ AGENT WORKFLOW (graph-confident hybrid)
       ├─ Graph-query first (high-precision typed answers)
       ├─ Grep fallback when graph returns nothing
       └─ Graph hits ranked first in top-K (better P@K and R@K)

End-to-end on the BrainBench v1 corpus (240 rich-prose pages, before/after PR #188):

Metric BEFORE PR #188 AFTER PR #188 Δ
Precision@5 39.2% 44.7% +5.4 pts
Recall@5 83.1% 94.6% +11.5 pts
Correct in top-5 217 247 +30
Graph-only F1 (ablation) 57.8% (grep) 86.6% +28.8 pts

Plus 5 orthogonal capability checks (identity resolution, temporal queries, performance at 10K-page scale, robustness to malformed input, MCP operation contract). All pass. Full report: gbrain-evals.

The point: each technique handles a class of inputs the others miss. Vector search misses exact slug refs; keyword catches them. Keyword misses conceptual matches; vector catches them. RRF picks the best of both. Compiled-truth boost keeps assessments above timeline noise. Auto-link extraction wires the graph that lets backlink boost rank well-connected entities higher. Graph traversal answers questions search alone can't reach. The agent picks graph-first for precision and falls back to keyword for recall. All deterministic, all in concert, all measured.

Voice

Call a phone number. Your AI answers. It knows who's calling, pulls their full context from the brain, and responds like someone who actually knows your world. When the call ends, a brain page appears with the transcript, entity detection, and cross-references.

Voice client connected

See it in action

The voice recipe ships with GBrain: Voice-to-Brain. WebRTC works in a browser tab with zero setup. A real phone number is optional.

Engine Architecture

CLI / MCP Server
     (thin wrappers, identical operations)
              |
      BrainEngine interface (pluggable)
              |
     +--------+--------+
     |                  |
PGLiteEngine       PostgresEngine
  (default)          (Supabase)
     |                  |
~/.gbrain/           Supabase Pro ($25/mo)
brain.pglite         Postgres + pgvector
embedded PG 17.5

     gbrain migrate --to supabase|pglite
         (bidirectional migration)

PGLite: embedded Postgres, no server, zero config. When your brain outgrows local (1000+ files, multi-device), gbrain migrate --to supabase moves everything.

File Storage

Brain repos accumulate binaries. GBrain has a three-stage migration:

gbrain files mirror <dir>       # copy to cloud, local untouched
gbrain files redirect <dir>     # replace local with .redirect pointers
gbrain files clean <dir>        # remove pointers, cloud only
gbrain files restore <dir>      # download everything back (undo)

Storage backends: S3-compatible (AWS, R2, MinIO), Supabase Storage, or local.

Commands

SETUP
  gbrain init [--supabase|--url]        Create brain (PGLite default)
  gbrain migrate --to supabase|pglite   Bidirectional engine migration
  gbrain upgrade                        Self-update with feature discovery

PAGES
  gbrain get <slug>                     Read a page (fuzzy slug matching)
  gbrain put <slug> [< file.md]         Write/update (auto-versions)
  gbrain delete <slug>                  Delete a page
  gbrain list [--type T] [--tag T]      List with filters

SEARCH
  gbrain search <query>                 Keyword search (tsvector)
  gbrain query <question>              Hybrid search (vector + keyword + RRF)

IMPORT
  gbrain import <dir> [--no-embed] [--workers N]
                                        Import markdown (idempotent)
  gbrain sync [--repo <path>] [--workers N]
                                        Git-to-brain incremental sync
                                        (>100-file diffs auto-parallelize 4 workers on Postgres)
  gbrain export [--dir ./out/]          Export to markdown

FILES
  gbrain files list|upload|sync|verify  File storage operations

EMBEDDINGS
  gbrain embed [<slug>|--all|--stale]   Generate/refresh embeddings

LINKS + GRAPH
  gbrain link|unlink|backlinks          Cross-reference management
  gbrain extract links|timeline|all     Batch backfill from existing pages
                                        (--source db|fs, --type, --since, --dry-run)
  gbrain graph-query <slug>             Typed traversal (--type T --depth N
                                        --direction in|out|both)

JOBS (Minions)
  gbrain jobs submit <name> [--params JSON] [--follow]  Submit a background job
  gbrain jobs list [--status S] [--queue Q]             List jobs with filters
  gbrain jobs get|cancel|retry|delete <id>              Manage job lifecycle
  gbrain jobs prune [--older-than 30d]                  Clean completed/dead jobs
  gbrain jobs stats                                     Job health dashboard
  gbrain jobs smoke                                     One-command health check
  gbrain jobs work [--queue Q] [--concurrency N]        Start worker daemon

SKILLS (v0.19)
  gbrain skillify scaffold <name>       Create 5 stub files + idempotent resolver row
  gbrain skillify check [path]          10-item audit of a skill
  gbrain skillpack list                 Print the 25 curated skills in the bundle
  gbrain skillpack install <name>       Copy one skill + its shared conventions into target
  gbrain skillpack install --all        Install the full curated bundle
  gbrain skillpack diff <name>          Per-file diff: bundle vs target workspace
  gbrain check-resolvable [--strict]    Resolver audit (reachability, MECE, DRY, routing, filing,
                                        SKILLIFY_STUB). Accepts RESOLVER.md OR AGENTS.md.
  gbrain routing-eval [--llm] [--json]  Intent→skill routing accuracy on fixtures

EVAL
  gbrain eval --qrels <path>            Legacy IR-eval (P@k, R@k, MRR, nDCG@k against ground truth)
  gbrain eval export [--since DUR]      Stream captured eval_candidates as NDJSON (BrainBench-Real)
  gbrain eval prune --older-than DUR    Retention cleanup for eval_candidates (requires window)
  gbrain eval replay --against FILE     Replay captured queries vs current build (Jaccard@k, top-1, latency Δ)
  gbrain eval longmemeval <dataset>     Run public LongMemEval against gbrain hybrid retrieval (v0.28.8)
                                        [--limit N] [--retrieval-only] [--keyword-only] [--expansion]
                                        [--top-k K] [--model M] [--output FILE]

ADMIN
  gbrain doctor [--json] [--fast]       Health checks (resolver, skills, DB, embeddings)
  gbrain doctor --fix [--dry-run]       Auto-fix DRY violations (delegate inlined rules to conventions)
  gbrain doctor --locks                 List idle-in-tx backends (57014 diagnostic, Postgres only)
  gbrain stats                          Brain statistics
  gbrain serve                          MCP server (stdio)
  gbrain serve --http [--port 3131]     HTTP MCP server with OAuth 2.1 + admin dashboard
                                        [--token-ttl 3600] [--enable-dcr]
                                        [--public-url URL] [--log-full-params]
  gbrain auth create|list|revoke|test   Legacy bearer token management
  gbrain auth register-client <name>    Register an OAuth 2.1 client
        --grant-types client_credentials,authorization_code
        --scopes "read write admin"
  gbrain auth revoke-client <client_id> Revoke an OAuth 2.1 client (cascade purges
                                        active tokens + auth codes via FK CASCADE)
  # OAuth 2.1 clients can also be registered from the /admin dashboard or
  # programmatically via oauthProvider.registerClientManual() for host-repo wrappers.
  gbrain integrations                   Integration recipe dashboard
  gbrain sources list|add|remove|...    Multi-source brain management (v0.18)
                                        v0.28.2: --url <https://...> registers a federated
                                        remote git repo; clone is auto-managed under
                                        $GBRAIN_HOME/clones/<id>/ and re-cloned on sync if
                                        it goes missing. Also exposed via MCP for remote
                                        agent setup (whoami + sources_{add,list,remove,status}).
  gbrain dream [--dry-run] [--phase N]  8-phase maintenance cycle (lint→backlinks→sync→synthesize
                                        →extract→patterns→embed→orphans). v0.23 added synthesize +
                                        patterns: transcripts → reflections + cross-session themes.
  gbrain dream --input <file>           Ad-hoc transcript synthesis (implies --phase synthesize)
  gbrain dream --date YYYY-MM-DD        Synthesize a single day; --from/--to for backfill ranges
  gbrain check-backlinks check|fix      Back-link enforcement
  gbrain lint [--fix]                   LLM artifact detection
  gbrain repair-jsonb [--dry-run]       Repair v0.12.0 double-encoded JSONB (Postgres)
  gbrain orphans [--json] [--count]     Find pages with zero inbound wikilinks
  gbrain transcribe <audio>             Transcribe audio (Groq Whisper)
  gbrain research init <name>           Scaffold a data-research recipe
  gbrain research list                  Show available recipes

Run gbrain --help for the full reference.

Origin Story

I was setting up my OpenClaw agent and started a markdown brain repo. One page per person, one page per company, compiled truth on top, timeline on the bottom. Within a week: 10,000+ files, 3,000+ people, 13 years of calendar data, 280+ meeting transcripts, 300+ captured ideas.

The agent runs while I sleep. The dream cycle scans every conversation, enriches missing entities, fixes broken citations, consolidates memory. I wake up and the brain is smarter than when I went to sleep.

The skills in this repo are those patterns, generalized. What took 11 days to build by hand ships as a mod you install in 30 minutes.

Docs

For agents:

For humans:

Reference:

Benchmarks:

  • gbrain-evals ... BrainBench, the sibling repo that holds the eval harness, corpus, scorecards, and 4-adapter comparisons. Depends on gbrain; not installed alongside gbrain.

Contributing

See CONTRIBUTING.md. Run bun run test for the parallel unit-test fast loop (~85s on a Mac dev box, 3700+ tests) or bun run verify for the pre-push gate (privacy + jsonb + progress + test-isolation + wasm + admin-build + typecheck). For the full local CI gate (gitleaks + unit + all 29 E2E files in Docker, the same checks GH Actions runs), use bun run ci:local ... or bun run ci:local:diff for the diff-aware subset during fast iteration.

If you're working on retrieval or any of the search/embedding/ranking surface, set GBRAIN_CONTRIBUTOR_MODE=1 in your shell rc and use gbrain eval replay to gate your changes against a snapshot of real captured queries — the dev loop is documented in docs/eval-bench.md. Capture is off by default for production users (no surprise data accumulation); the env var is the contributor opt-in.

PRs welcome for: new enrichment APIs, performance optimizations, additional engine backends, new skills following the conformance standard in skills/skill-creator/SKILL.md.

License

MIT