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* feat(extract): link/timeline extraction freshness watermark (#1696) Closes the "imported != curated" gap: plain `gbrain sync` only extracts CHANGED pages, so a brain with autopilot off accumulated a links table that was ~99.7% untyped `mentions` with nothing surfacing it. Adds a per-page freshness watermark (pages.links_extracted_at, migration v112) and three things built on it: - `gbrain extract --stale [--source-id] [--catch-up] [--dry-run] [--json]`: incremental DB-source link+timeline sweep over pages whose extraction is stale (never extracted, edited since, or extractor version bumped). Small byte-bounded batches, non-swallowing flush, stamp-after-flush so a crash re-extracts idempotently. Stamps with the row's READ updated_at (not now()) so a concurrent edit during the sweep stays stale instead of being lost. - `links_extraction_lag` doctor check (local + remote): warn-only by default (>20%), hard-fail only via GBRAIN_EXTRACTION_LAG_FAIL_PCT. Vacuous-skip <100 pages; pre-v112 brains graceful-skip. - `gbrain sync --no-extract` flag + end-of-sync nudge (fires on synced|first_sync|up_to_date so the initial import surfaces its backlog). Three new BrainEngine methods (countStalePagesForExtraction / listStalePagesForExtraction / markPagesExtractedBatch) with Postgres<->PGLite parity + bootstrap probes. Schema parity: schema.sql + regenerated pglite-schema.ts + schema-embedded.ts + bootstrap-coverage test. Migration v112 (composite (source_id, links_extracted_at) index, no backfill so the real backlog surfaces on first doctor run). * test(audit): hermetic GBRAIN_AUDIT_DIR override for prune ENOENT case The "no-op when audit dir does not exist (ENOENT)" case called pruneOldBatchRetryAuditFiles without a GBRAIN_AUDIT_DIR override, so it read the developer's real ~/.gbrain/audit and flaked (kept>0) on any machine with prior gbrain audit history. Point it at a guaranteed-nonexistent temp path so it tests the real missing-dir branch hermetically — matching the file header's "never touches ~/.gbrain/audit" contract. Pre-existing flake (introduced by v0.41.19.0 #1537), unrelated to #1696. * chore: bump version and changelog (v0.42.2.0) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: CLAUDE.md key-files entry for the #1696 extract-stale wave + regen llms-full --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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0.42.7.0
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