Merge remote-tracking branch 'origin/master' into garrytan/gbrain-evals

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Garry Tan
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All notable changes to GBrain will be documented in this file.
## [0.14.0] - 2026-04-20
## **Move gateway crons to Minions. Zero LLM tokens per cron fire.**
## **Worker abort path finally marks aborted jobs dead.**
Your OpenClaw gateway pins at 100% CPU when your 32 cron jobs each boot a full Opus session per fire, and ~14 of them are pure API-fetch-and-write scripts that don't need reasoning at all. This release adds a `shell` job type to Minions so those deterministic crons move off the gateway to the Minions worker. ~60% gateway load reduction at OpenClaw scale. Retry, backoff, DLQ, unified `gbrain jobs list` visibility, all free. The LLM-reasoning crons stay on the gateway where they belong.
Getting there meant fixing the Minions worker abort path, which was quietly wrong since v0.11: aborted jobs (timeout, cancel, lock loss) returned silently without calling `failJob`, so status stayed `active` until a stall sweep found them ~30s later. This release makes abort-reason the `error_text` of an immediate `failJob` call. Handlers get cleaner signals, operators see accurate status, `--follow` stops hanging past timeouts.
### The numbers that matter
Measured on the new `test/minions-shell.test.ts` (40 unit cases) and `test/e2e/minions-shell.test.ts` (4 E2E cases) plus 5 rounds of pre-landing review (spec adversarial x2, CEO scope, DX, eng, Codex outside voice).
| Metric | BEFORE v0.14.0 | AFTER v0.14.0 | Δ |
|---------------------------------------------------|-------------------------|-----------------------------------|----------------------|
| LLM tokens per cron fire | ~full Opus context boot | 0 (deterministic crons) | **100% reduction** |
| Gateway CPU headroom with ~14 crons moved | 0% | ~60% free | cron load off gateway|
| Aborted job status lag (timeout/cancel/lock-loss) | up to 30s | immediate `failJob` call | **deterministic** |
| Shell submission surfaces | none | CLI + trusted `submit_job` | 2 paths, both gated |
| Submission audit trail | none | JSONL at `~/.gbrain/audit/` | operational trace |
| Unit tests | 1318 pass | **1358 pass (+40 shell cases)** | +40 |
| E2E tests | 124 | **128 (+4 shell lifecycle)** | +4 |
| Pre-landing review rounds | 1 (eng) | **5 (spec×2 / CEO / DX / eng / codex)** | 29 issues surfaced, 26 resolved |
The abort-path fix is the quietly-important one. Handlers that use `ctx.signal` for cooperative cancel (sync, embed) now have deterministic status flips instead of waiting for the stall sweep. Shell jobs get reliable timeout semantics for the first time: `cmd: 'sleep 30', timeout_ms: 2000` hits `dead` at ~2100ms instead of ~32000ms.
### What this means for OpenClaw operators
`gbrain upgrade` reads `skills/migrations/v0.14.0.md` and walks your host agent through the adoption: enable the worker with `GBRAIN_ALLOW_SHELL_JOBS=1`, audit every cron entry (LLM-requiring stays, deterministic moves), propose a rewrite per cron with a diff, verify one fire end-to-end before approving the next batch. Never auto-rewrites your crontab — every change is a human approval per-cron. On Postgres, one persistent worker daemon claims each job. On PGLite, every crontab invocation adds `--follow` for inline execution because PGLite doesn't support the worker daemon. Either way, your gateway CPU stops pinning at 100% and your live messages stop getting blocked by batch processing. See `docs/guides/minions-shell-jobs.md` for usage recipes and `skills/migrations/v0.14.0.md` for the adoption playbook.
### Itemized changes
#### New `shell` job type
- **Spawn arbitrary commands as Minions jobs.** Pass `{cmd: "string"}` (shell-interpolated via `/bin/sh -c`) or `{argv: ["bin","arg"]}` (no shell, safe for programmatic callers). Both forms require an absolute `cwd`. Env vars are scoped to a minimal allowlist (`PATH, HOME, USER, LANG, TZ, NODE_ENV`) to prevent accidental `$OPENAI_API_KEY` interpolation; callers opt-in to additional keys per job.
- **Two-layer security: MCP boundary + env flag.** `submit_job` rejects `name: 'shell'` when `ctx.remote === true`. Independent of the env flag. `MinionQueue.add('shell', ...)` also rejects unless the caller explicitly opts in via `{allowProtectedSubmit: true}` as the 4th arg, so an in-process handler can't programmatically submit a shell child by accident. Worker only registers the handler when `GBRAIN_ALLOW_SHELL_JOBS=1` is set on the worker process. Default: off. Opt in per-host.
- **Graceful child shutdown.** Abort fires SIGTERM, 5-second grace, then SIGKILL. Listens to both `ctx.signal` (timeout/cancel/lock-loss) and a new `ctx.shutdownSignal` (worker process SIGTERM/SIGINT), so deploy restarts don't orphan shell children. Non-shell handlers ignore `shutdownSignal` and keep running through the worker's 30s cleanup race.
- **UTF-8-safe output truncation.** stdout is retained as the last 64KB, stderr as the last 16KB, with a `[truncated N bytes]` marker prepended when exceeded. Uses `string_decoder.StringDecoder` so multibyte characters don't split across the truncation boundary.
- **Operational audit trail at `~/.gbrain/audit/shell-jobs-YYYY-Www.jsonl`** (ISO-week rotation, override via `GBRAIN_AUDIT_DIR`). Records caller, remote flag, job_id, cwd, and cmd/argv display. Never logs env values. Best-effort writes: failures log to stderr but don't block submission. Operational trace for "what did this cron submit last Tuesday," not forensic insurance.
- **Starvation warning on first-time submission.** If you `gbrain jobs submit shell ...` without `--follow` and no worker with the env flag is running, stderr prints a warning block pointing at both `--follow` and `gbrain jobs work` remediation. Turns a silent "job sits in waiting forever" failure mode into a directed next-step.
#### Worker abort path overhaul
- **Aborted jobs now call `failJob` with the abort reason.** Pre-v0.14.0 worker returned silently when `ctx.signal.aborted` fired, leaving jobs in `active` until stall sweep. Fixed: catch-block now derives reason from `abort.signal.reason` (`timeout`, `cancel`, `lock-lost`, `shutdown`) and calls `failJob(id, token, "aborted: <reason>")`. Token-match makes the call idempotent: if another path already flipped status, it no-ops cleanly. Downstream `--follow` loops and status assertions now reflect reality.
- **`ctx.shutdownSignal` separated from `ctx.signal`.** Only fires on worker process SIGTERM/SIGINT. Handlers that need shutdown-specific cleanup (currently: shell handler's SIGTERM→SIGKILL on its child) subscribe to both signals. Non-shell handlers subscribe only to `ctx.signal` and don't get cancelled mid-flight on deploy restart.
#### CLI + operation surface additions
- **`gbrain jobs submit --timeout-ms N`.** Per-job wall-clock timeout in ms. Surfaced from the existing `timeout_ms` schema field, which had no CLI flag before.
- **`submit_job` operation gains `timeout_ms` param.** Same field exposed through MCP (for non-protected names).
- **`gbrain jobs submit --help` lists handler types.** `shell` is explicitly called out as CLI-only with a pointer to the guide. Closes the "what handlers are even available" discovery gap.
#### Tests
- **40 new unit cases in `test/minions-shell.test.ts`** covering validation (cmd/argv/cwd/env), spawn happy + error paths, UTF-8 safe truncation, SIGTERM abort via both signals, env allowlist (OPENAI_API_KEY blocked, PATH inherited, caller override), ISO-week filename at year boundary (2027-01-01 → W53 2026), audit write happy + EACCES failure paths, whitespace-bypass defense on `MinionQueue.add(' shell ', ...)`, and auto-added regression tests per the iron rule (non-protected names unaffected).
- **4 E2E tests in `test/e2e/minions-shell.test.ts`** covering full lifecycle (submit → worker claim → spawn → complete with captured stdout), `MinionQueue.add` defense-in-depth, `submit_job` MCP-guard rejection, `submit_job` CLI-path acceptance.
#### Docs
- **New `docs/guides/minions-shell-jobs.md`** opens with a 30-second copy-paste hello-world, then covers the two-layer security model with honest callouts about what env allowlist does and does not do, Postgres vs PGLite crontab recipes side-by-side, debug playbook (`gbrain jobs list`, `gbrain jobs get`, audit log tail, PGLite `--follow` note), known limitations, and an `#errors` table linked from every `UnrecoverableError` the handler throws.
- **New `skills/migrations/v0.14.0.md`** is the adoption playbook your host agent reads on `gbrain upgrade`. Walks through enabling the worker, auditing cron entries (LLM-requiring vs deterministic), proposing per-cron rewrites with diffs, and verifying end-to-end before batch approval. Iron rule: never auto-rewrites the operator's crontab — every change is human-approved per-cron.
- **README.md** links the guide from the Commands section.
#### Pre-ship review
Five independent rounds surfaced 29 issues across the plan. 26 resolved before a single line of code was written: spec-review adversarial subagent (x2 iterations) caught implementer-ergonomic gaps (caller derivation, mkdirSync, ISO-week formatter). CEO review + SELECTIVE EXPANSION cherry-picked argv form, audit log, SIGTERM grace, env allowlist, MCP-guard defense-in-depth, honest FS-read trust model, orphan-child `setTimeout.unref()` fix. DX review added the starvation warning block. Eng review added `ctx.shutdownSignal` separation, revised trusted-arg from opts-fold to separate 4th arg (stops accidental pass-through via `{...userOpts}` spreads), 18 additional test cases, 4 iron-rule regression tests. Codex outside voice caught 4 architectural dealbreakers: the worker abort silent-return bug (the "contract is a lie" finding), `--timeout-ms` CLI flag and `submit_job` param both missing, `PROTECTED_JOB_NAMES.has(name)` whitespace bypass before normalization. Effort estimate revised 8-10h → 16-20h once the full review was done.
## [0.13.1] - 2026-04-20
## **The brain stops being a write-once graph and starts being a runtime.**
## **Five new modules land on top of v0.12's knowledge graph layer.**
GBrain v0.13.1 ships the Knowledge Runtime delta on top of v0.13.0's frontmatter graph. Typed abstractions that turn a knowledge base into a runtime other agents can adopt. Five focused modules build on the v0.12.0 graph layer and v0.11.x Minions orchestration. A Resolver SDK unifies external lookups. A BrainWriter enforces integrity pre-commit. `gbrain integrity` repairs bare-tweet citations at scale. A BudgetLedger caps runaway resolver spend. Minions gains TZ-aware quiet-hours at claim time.
### What you can do now that you couldn't before
- **`gbrain integrity --auto --confidence 0.8`** repairs the 1,424 bare-tweet citations in your brain without human review. Three-bucket confidence: auto-repair ≥0.8, review queue 0.50.8, skip <0.5. Resumable via `~/.gbrain/integrity-progress.jsonl`.
- **`gbrain resolvers list`** introspects the typed plugin registry. Two builtins ship: `url_reachable` (HEAD check + SSRF guard) and `x_handle_to_tweet` (X API v2 with confidence scoring). Every result carries `{value, confidence, source, fetchedAt, costEstimate, raw}`.
- **`gbrain config set budget.daily_cap_usd 10`** puts a hard wall on resolver spend. Concurrent reserves serialize via `SELECT FOR UPDATE`. TTL auto-reclaim handles process death between reserve and commit.
- **BrainWriter + pre-commit validators** make the Philip-Leung hallucination class structurally impossible. `Scaffolder` builds every tweet URL from API output, never LLM text. `SlugRegistry` detects name collisions at create time. Four validators (citation, link, back-link, triple-HR) run on write. `writer.lint_on_put_page=true` enables observability before the strict-mode flip.
- **Quiet-hours on Minion jobs** stop the 3am DM. Set `quiet_hours: {start:22, end:7, tz:"America/Los_Angeles", policy:"defer"}` on a job. Worker checks at claim time (not dispatch). Wrap-around windows supported.
### Schema migrations
Three new migrations, all idempotent, apply automatically on `gbrain init` / upgrade.
- **v11 — budget_ledger + budget_reservations.** Per-(scope, resolver, local_date) rollup with held-reservation TTL. Rollback: DROP TABLE (budget is regenerable from resolver call logs).
- **v12 — minion_jobs.quiet_hours + stagger_key.** Additive nullable columns; existing rows keep working unchanged.
- **TS v0.13.1 — grandfather `validate: false`.** Walks every page, adds the opt-out frontmatter so legacy content skips the new validators. `gbrain integrity --auto` clears the flag per-page as citations are repaired. Rollback log at `~/.gbrain/migrations/v0_13_1-rollback.jsonl`.
### Out of scope (intentional, per CEO plan)
- **Strict-mode default flip.** BrainWriter ships with `strict_mode=lint`. The flip to strict requires a 7-day soak + BrainBench regression ≤1pt + zero false-positive count.
- **Sandboxed user plugins.** v0.13 ships builtins only. User-provided TS modules deferred pending a real isolation story (worker_threads or vm2) in a follow-on release.
- **`openai_embedding` refactor.** Deferred to PR 1.5 post-flip; embedding is a hot path.
- **Wintermute `claw-bridge`.** Adoption path is documentation-only this release.
### Tests
- **89 new unit tests** across `test/resolvers.test.ts` (43), `test/writer.test.ts` (57), `test/integrity.test.ts` (21), `test/enrichment.test.ts` (23), `test/minions-quiet-hours.test.ts` (25), `test/post-write-lint.test.ts` (11), `test/migrations-v0_13_0.test.ts` (5).
- **E2E passes on Postgres:** 115 pass / 0 fail across mechanical, sync, upgrade, minions concurrency + resilience, graph-quality, MCP, migration-flow, search-quality, skills (Tier 2 Opus/Sonnet).
- **1574 total tests pass** with an active test Postgres container. 1522 pass in unit-only mode (E2E auto-skip without DATABASE_URL).
### Itemized changes
#### Resolver SDK (`src/core/resolvers/`)
`Resolver<I, O>` interface with `{id, cost, backend, available(), resolve()}`. In-memory `ResolverRegistry`. `ResolverContext` carries `{engine, storage, config, logger, requestId, remote, deadline?, signal?}` — the `remote` flag mirrors `OperationContext.remote` for uniform trust boundaries. `FailImproveLoop.execute` gained optional `opts.signal`; backwards compatible. Two reference builtins: `url_reachable` (SSRF guard reuses wave-3 `isInternalUrl`, max-5 redirects with per-hop re-validation, AbortSignal composition) and `x_handle_to_tweet` (X API v2 recent search, strict handle regex, confidence-scored matches, 2x 429 retry honoring Retry-After, 401/403 → `ResolverError(auth)`). `gbrain resolvers list|describe` for introspection.
#### BrainWriter + validators (`src/core/output/`)
`BrainWriter.transaction(fn, ctx)` over `engine.transaction` with pre-commit validators via `WriteTx` API. Scaffolder builds typed citations (`tweetCitation`, `emailCitation`, `sourceCitation`) + `entityLink` + `timelineLine` — URLs from structured IDs, never LLM text. `SlugRegistry` detects collisions at create time. Four validators (`citation`, `link`, `back-link`, `triple-hr`) skip fenced code / inline code / HTML comments correctly. Config flag `writer.strict_mode` (default `lint`).
#### gbrain integrity (`src/commands/integrity.ts`)
Four subcommands: `check` (read-only report with `--json`, `--type`, `--limit`), `auto` (three-bucket repair with `--confidence`, `--review-lower`, `--dry-run`, `--fresh`, `--limit`), `review` (prints queue path + count), `reset-progress`. Nine bare-tweet phrase regexes. External-link extraction for optional dead-link probing. Repairs route through `BrainWriter.transaction`.
#### BudgetLedger + CompletenessScorer (`src/core/enrichment/`)
`BudgetLedger.reserve` returns `{kind:'held'}` or `{kind:'exhausted'}`. FOR UPDATE serializes concurrent reserves. `commit`, `rollback`, `cleanupExpired`. Midnight rollover via `Intl.DateTimeFormat` en-CA in configured IANA tz. Seven per-type rubrics + default (weights sum to 1.0). Person rubric's `non_redundancy` and `recency_score` kill Wintermute's length-only heuristic + 30-day-re-enrich-forever pathologies.
#### Minions scheduler polish (`src/core/minions/`)
`quiet-hours.ts` — pure `evaluateQuietHours(cfg, now?)`. Wrap-around windows. Unknown tz fails open. `stagger.ts` — FNV-1a → 059 deterministic across runtimes. `worker.ts` integrated: post-claim evaluation, defer → `delayed/+15m`, skip → `cancelled`.
#### Post-write lint hook (`src/core/output/post-write.ts`)
`runPostWriteLint` invokes the four validators against freshly-written pages. Gated on `writer.lint_on_put_page` (default false). Wired into `put_page` operation handler as non-blocking. Findings go to `~/.gbrain/validator-lint.jsonl` + `engine.logIngest`.
#### Design doc
`docs/designs/KNOWLEDGE_RUNTIME.md` — 717 lines covering the 4-layer architecture, integration seams, 7-phase migration path, 10 open questions. Promoted to repo so future contributors can trace decisions.
#### Prior learnings applied
- Snapshot slugs upfront (`engine.getAllSlugs()`) in grandfather migration — avoids pagination-mutation instability.
- TS-registry migrations only (post-v0.11.1 migration-discovery change).
- Migration never calls `saveConfig` — avoids Postgres→PGLite flip.
- Quiet-hours at claim/promote, not dispatch — queued job becomes claimable after window opens.
- Core fn pattern for any handler wrapping a CLI command.
- Schema v11 not v8 (graph layer took v8-v10).
- `gray-matter` + line tokenizer for citation parsing, not `marked.lexer`.
## [0.13.0] - 2026-04-20
## **Frontmatter becomes a graph. Every `company:`, `investors:`, `attendees:` you wrote turns into typed edges automatically.**
## **Graph queries get dramatically richer without you changing a word of content.**
v0.13 teaches the knowledge graph to read your YAML frontmatter. A `company: Acme` on a person page becomes a `works_at` edge. `investors: [Fund-A, Fund-B]` on a deal page becomes `invested_in` edges pointing to the deal. `attendees: [alice, charlie]` on a meeting page becomes `attended` edges. Direction respects subject-of-verb: `people/alice → meetings/2026-04-03` reads naturally because Alice is the one who attended. `gbrain graph <entity> --depth 2` against an entity with rich frontmatter goes from returning ~7 nodes to 50+, with zero skill edits or frontmatter changes.
Everything else stays the same. Agents writing `put_page` with frontmatter today work unchanged, the graph populates behind the scenes. The `auto_links` response gains one additive field: `unresolved`, so agents can see which frontmatter names couldn't be matched to existing pages and queue them for enrichment. No breaking changes to any public API.
### The numbers that matter
Benchmarked against a 46K-page production brain with ~15K frontmatter references:
| Metric | Before (v0.12) | After (v0.13) | Δ |
|--------|----------------|----------------|---|
| Graph edges total | 28K | 43K | +54% |
| `gbrain graph <hub-entity> --depth 2` node count | 7 | 52 | +643% |
| 4-hop queries (person → company → deal → investor) | fail | return aggregate | unlocked |
| Migration wall-clock on 46K pages | N/A | 3min | one-time |
| LLM API calls during migration | N/A | 0 | deterministic |
| Embedding API calls during migration | N/A | 0 | zero cost |
| Frontmatter field | Edges produced on 46K-page test brain |
|-------------------|----------------------------------------|
| `company`, `companies` (person pages) | ~9,800 |
| `key_people` (company pages) | ~1,400 |
| `investors` (deal + company pages) | ~2,100 |
| `attendees` (meeting pages) | ~800 |
| `partner` (company pages) | ~180 |
| `sources`, `source` (any page) | ~1,200 |
| `related`, `see_also` (any page) | ~400 |
The 4-hop query pattern that motivated this release: "top investors in an advisor's portfolio." Pre-v0.13: impossible without manual graph edits. Post-v0.13: `gbrain graph <advisor-slug> --depth 2 --type yc_partner,invested_in` returns ranked fund pages with frequencies. Works because the advisor's `companies:` field points to portfolio companies, those companies' `partner:` field points back, and their `investors:` field resolves to fund pages.
### What this means for OpenClaw agents
If you maintain an agent fork that uses gbrain as its persistent memory, v0.13 is the easiest upgrade since v0.7. Run `gbrain upgrade`, wait ~3 minutes while the orchestrator runs schema + backfill, and graph queries get better. No skill edits required for the majority of skills. Three skills (`meeting-ingestion`, `enrich`, `idea-ingest`) gain an optional new phase if you want to consume the new `auto_links.unresolved` field, see `docs/UPGRADING_DOWNSTREAM_AGENTS.md` for the exact diffs.
## To take advantage of v0.13
`gbrain upgrade` should do this automatically. If it didn't, or if `gbrain doctor` warns about a partial migration:
1. **Run the orchestrator manually:**
```bash
gbrain apply-migrations --yes
```
2. **Your agent reads `skills/migrations/v0.13.0.md` the next time you interact with it.** If your agent is headless (cron, OpenClaw worker, Minion handler), the migration orchestrator already ran the mechanical side; no additional agent action is needed.
3. **Verify the outcome:**
```bash
gbrain graph <some-entity> --depth 2 # any entity with frontmatter refs
gbrain stats # link_count should reflect ~15-20K new frontmatter edges
```
4. **If any step fails or the numbers look wrong,** please file an issue:
https://github.com/garrytan/gbrain/issues with:
- output of `gbrain doctor`
- contents of `~/.gbrain/upgrade-errors.jsonl` if it exists
- which step broke
This feedback loop is how the gbrain maintainers find fragile upgrade paths. Thank you.
### Itemized changes
**Knowledge graph, frontmatter edge projection:**
- `src/core/link-extraction.ts`, new `FRONTMATTER_LINK_MAP` (canonical field to type + direction + dir-hint map). New `SlugResolver` interface + `makeResolver(engine, {mode})` factory. `extractFrontmatterLinks` extractor. `extractPageLinks` becomes async and emits frontmatter edges alongside markdown refs. `LinkCandidate` gains `fromSlug`, `linkSource`, `originSlug`, `originField`.
- `src/core/operations.ts::runAutoLink`, bidirectional reconciliation. Outgoing edges (markdown + own-frontmatter) reconciled via `getLinks`; incoming edges (other-page to self from `key_people`/`attendees`/etc.) reconciled via `getBacklinks` scoped to `origin_page_id`. Manual edges (`link_source='manual'`) never touched.
- `put_page` response shape extends with `auto_links.unresolved: Array<{field, name}>`. Additive; existing clients unaffected.
**Slug resolver:**
- Two-mode resolver (`batch` for migration, `live` for put_page post-hook). Fallback chain: exact slug, dir-hint construction, pg_trgm fuzzy match, optional keyword search (live only, `expand: false` mandatory per `operations-query-hidden-haiku` learning).
- New engine method `findByTitleFuzzy(name, dirPrefix?, minSimilarity?)` implemented on both Postgres and PGLite engines. Uses the `%` operator + `similarity()` function; GIN trigram index drives the match.
- Per-run cache: same name, single DB lookup.
**Schema migrations:**
- migrate.ts v11 (`links_provenance_columns`): adds `link_source`, `origin_page_id`, `origin_field`. Swaps unique constraint to `UNIQUE NULLS NOT DISTINCT (from, to, type, link_source, origin_page_id)`. CHECK constraint on `link_source` values. New indexes on link_source + origin_page_id.
- `src/commands/migrations/v0_13_0.ts`, release orchestrator (Phase A schema, Phase B backfill, Phase C verify). Registered in migrations/index.ts. Resumable via `partial` status + `ON CONFLICT DO NOTHING`.
**Engine layer:**
- Both engines: `addLink` gains `linkSource`, `originSlug`, `originField` params. `addLinksBatch` unnest grows from 4 columns to 7. `removeLink` gains optional `linkSource` filter. `getLinks` + `getBacklinks` now return `link_source`, `origin_slug`, `origin_field` in the Link shape.
- PGLite + Postgres parity verified end-to-end in `test/pglite-engine.test.ts`.
**Release reliability (applies to every future release):**
- `src/commands/upgrade.ts`, best-effort `gbrain post-upgrade` failures now append a structured record to `~/.gbrain/upgrade-errors.jsonl` instead of silently swallowing the error.
- `src/commands/doctor.ts`, surfaces the latest upgrade-errors entry with a paste-ready recovery hint. Works alongside the existing partial-migration detector.
- CHANGELOG format adds the "To take advantage of v[version]" block pattern (seen above). Required for every release going forward so users have a self-repair path when automation fails.
**CLI changes:**
- `gbrain extract links --source db --include-frontmatter`, v0.13 flag. Default OFF for back-compat (existing `gbrain extract` runs don't suddenly get new edges). Migration orchestrator explicitly enables it for the one-time backfill.
- `gbrain extract` now prints a top-20 summary of unresolvable frontmatter names when `--include-frontmatter` is active, so users see exactly where the graph has holes.
**Tests:**
- `test/pglite-engine.test.ts` covers new 7-column addLinksBatch unnest + NULLS NOT DISTINCT semantics + ON CONFLICT on the new constraint.
- `test/link-extraction.test.ts` covers async signature regression, resolver fallback chain, cache hit, bad-type skip, context enrichment.
- `test/extract.test.ts` covers fs-source async signature, `includeFrontmatter` opt-in, incoming-direction semantics for `investors`/`key_people`/`attendees`.
- `test/migrate.test.ts` updated for new constraint name post-v11.
- `test/apply-migrations.test.ts` registry now includes v0.13.0 in skippedFuture buckets for older installed versions.
**Documentation:**
- `skills/migrations/v0.13.0.md`, user-facing upgrade skill.
- `docs/UPGRADING_DOWNSTREAM_AGENTS.md`, appended v0.13 section: no-action-required verdict + field-to-type map + optional skill diffs for meeting-ingestion, enrich, idea-ingest.
## [0.12.3] - 2026-04-19
## **Reliability wave: the pieces v0.12.2 didn't cover.**
## **Sync stops hanging. Search timeouts stop leaking. `[[Wikilinks]]` are edges.**
v0.12.2 shipped the data-correctness hotfix (JSONB double-encode, splitBody, `/wiki/` types, parseEmbedding). This wave lands the remaining reliability fixes from the same community review pass, plus a graph-layer feature a 2,100-page brain needed to stop bleeding edges. No schema changes. No migration. `gbrain upgrade` pulls it.
### What was broken
**Incremental sync deadlocked past 10 files.** `src/commands/sync.ts` wrapped the whole import in `engine.transaction`, and `importFromContent` also wrapped each file. PGLite's `_runExclusiveTransaction` is non-reentrant — the inner call parks on the mutex the outer call holds, forever. In practice: 3 files synced fine, 15 files hung in `ep_poll` until you killed the process. Bulk Minions jobs and citation-fixer dream-cycles regularly hit this. Discovered by @sunnnybala.
**`statement_timeout` leaked across the postgres.js pool.** `searchKeyword` and `searchVector` bounded queries with `SET statement_timeout='8s'` + `finally SET 0`. But every tagged template picks an arbitrary pool connection, so the SET, the query, and the reset could land on three different sockets. The 8s cap stuck to whichever connection ran the SET, got returned to the pool, and the next unrelated caller inherited it. Long-running `embed --all` jobs and imports clipped silently. Fix by @garagon.
**Obsidian `[[WikiLinks]]` were invisible to the auto-link post-hook.** `extractEntityRefs` only matched `[Name](people/slug)`. On a 2,100-page brain with wikilinks throughout, `put_page` extracted zero auto-links. `DIR_PATTERN` also missed domain-organized wiki roots (`entities`, `projects`, `tech`, `finance`, `personal`, `openclaw`). After the fix: 1,377 new typed edges on a single `extract --source db` pass. Discovered and fixed by @knee5.
**Corrupt embedding rows broke every query that touched them.** `getEmbeddingsByChunkIds` on Supabase could return a pgvector string instead of a `Float32Array`. v0.12.2 fixed the normal path by normalizing inputs, but one genuinely bad row still threw and killed the ranking pass. Availability matters more than strictness on the read path.
### What you can do now that you couldn't before
- **Sync 100 files without hanging.** Per-file atomicity preserved, outer wrap removed. Regression test asserts `engine.transaction` is not called at the top level of `src/commands/sync.ts`. Contributed by @sunnnybala.
- **Run a long `embed --all` on Supabase without strangling unrelated queries.** `searchKeyword` / `searchVector` use `sql.begin` + `SET LOCAL` so the timeout dies with the transaction. 5 regression tests in `test/postgres-engine.test.ts` pin the new shape. Contributed by @garagon.
- **Write `[[people/balaji|Balaji Srinivasan]]` in a page and see a typed edge.** Same extractor, two syntaxes. Matches the filesystem walker — the db and fs sources now produce the same link graph from the same content. Contributed by @knee5.
- **Find your under-connected pages.** `gbrain orphans` surfaces pages with zero inbound wikilinks, grouped by domain. `--json`, `--count`, and `--include-pseudo` flags. Also exposed as the `find_orphans` MCP operation so agents can run enrichment cycles without CLI glue. Contributed by @knee5.
- **Degraded embedding rows skip+warn instead of throwing.** New `tryParseEmbedding()` sibling of `parseEmbedding()`: returns `null` on unknown input and warns once per process. Used on the search/rescore path. Migration and ingest paths still throw — data integrity there is non-negotiable.
- **`gbrain doctor` tells you which brains still need repair.** Two new checks: `jsonb_integrity` scans the four v0.12.0 write sites and reports rows where `jsonb_typeof = 'string'`; `markdown_body_completeness` heuristically flags pages whose `compiled_truth` is <30% of raw source length when raw has multiple H2/H3 boundaries. Fix hint points at `gbrain repair-jsonb` and `gbrain sync --force`.
### How to upgrade
```bash
gbrain upgrade
```
No migration, no schema change, no data touch. If you're on Postgres and haven't run `gbrain repair-jsonb` since v0.12.2, the v0.12.2 orchestrator still runs on upgrade. New `gbrain doctor` will tell you if anything still looks off.
### Itemized changes
**Sync deadlock fix (#132)**
- `src/commands/sync.ts` — remove outer `engine.transaction` wrap; per-file atomicity preserved by `importFromContent`'s own wrap.
- `test/sync.test.ts` — new regression guard asserting top-level `engine.transaction` is not called on > 10-file sync paths.
- Contributed by @sunnnybala.
**postgres-engine statement_timeout scoping (#158)**
- `src/core/postgres-engine.ts` — `searchKeyword` and `searchVector` rewritten to `sql.begin(async (tx) => { await tx\`SET LOCAL statement_timeout = ...\`; ... })`. GUC dies with the transaction; pool reuse is safe.
- `test/postgres-engine.test.ts` — 5 regression tests including a source-level guardrail grep against the production file (not a test fixture) asserting no bare `SET statement_timeout` outside `sql.begin`.
- Contributed by @garagon.
**Obsidian wikilinks + extended domain patterns (#187 slice)**
- `src/core/link-extraction.ts` — `extractEntityRefs` matches both `[Name](people/slug)` and `[[people/slug|Name]]`. `DIR_PATTERN` extended with `entities`, `projects`, `tech`, `finance`, `personal`, `openclaw`.
- Matches existing filesystem-walker behavior.
- Contributed by @knee5.
**`gbrain orphans` command (#187 slice)**
- `src/commands/orphans.ts` — new command with text/JSON/count outputs and domain grouping.
- `src/core/operations.ts` — `find_orphans` MCP operation.
- `src/cli.ts` — `orphans` added to `CLI_ONLY`.
- `test/orphans.test.ts` — 203 lines covering detection, filters, and all output modes.
- Contributed by @knee5.
**`tryParseEmbedding()` availability helper**
- `src/core/utils.ts` — new `tryParseEmbedding(value)`: returns `null` on unknown input, warns once per process via a module-level flag.
- `src/core/postgres-engine.ts` — `getEmbeddingsByChunkIds` uses `tryParseEmbedding` so one bad row degrades ranking instead of killing the query.
- `test/utils.test.ts` — new cases for null-return and single-warn.
- Hand-authored; codifies the split-by-call-site rule from the #97/#175 review.
**Doctor detection checks**
- `src/commands/doctor.ts` — `jsonb_integrity` scans `pages.frontmatter`, `raw_data.data`, `ingest_log.pages_updated`, `files.metadata` and reports `jsonb_typeof='string'` counts; `markdown_body_completeness` heuristic for ≥30% shrinkage vs raw source on multi-H2 pages.
- `test/doctor.test.ts` — detection unit tests assert both checks exist and cover the four JSONB sites.
- `test/e2e/jsonb-roundtrip.test.ts` — the regression test that should have caught the original v0.12.0 double-encode bug; round-trips all four JSONB write sites against real Postgres.
- `docs/integrations/reliability-repair.md` — guide for v0.12.0 users: detect via `gbrain doctor`, repair via `gbrain repair-jsonb`.
**No schema changes. No migration. No data touch.**
## [0.12.2] - 2026-04-19
## **Postgres frontmatter queries actually work now.**
+109 -14
View File
@@ -9,7 +9,7 @@ cron scheduling, reports, identity, and access control.
## Architecture
Contract-first: `src/core/operations.ts` defines ~36 shared operations. CLI and MCP
Contract-first: `src/core/operations.ts` defines ~41 shared operations (adds `find_orphans` in v0.12.3). CLI and MCP
server are both generated from this single source. Engine factory (`src/core/engine-factory.ts`)
dynamically imports the configured engine (`'pglite'` or `'postgres'`). Skills are fat
markdown files (tool-agnostic, work with both CLI and plugin contexts).
@@ -27,8 +27,8 @@ strict behavior when unset.
- `src/core/engine-factory.ts` — Engine factory with dynamic imports (`'pglite'` | `'postgres'`)
- `src/core/pglite-engine.ts` — PGLite (embedded Postgres 17.5 via WASM) implementation, all 40 BrainEngine methods. `addLinksBatch` / `addTimelineEntriesBatch` use multi-row `unnest()` with manual `$N` placeholders.
- `src/core/pglite-schema.ts` — PGLite-specific DDL (pgvector, pg_trgm, triggers)
- `src/core/postgres-engine.ts` — Postgres + pgvector implementation (Supabase / self-hosted). `addLinksBatch` / `addTimelineEntriesBatch` use `INSERT ... SELECT FROM unnest($1::text[], ...) JOIN pages ON CONFLICT DO NOTHING RETURNING 1` — 4-5 array params regardless of batch size, sidesteps the 65535-parameter cap.
- `src/core/utils.ts` — Shared SQL utilities extracted from postgres-engine.ts
- `src/core/postgres-engine.ts` — Postgres + pgvector implementation (Supabase / self-hosted). `addLinksBatch` / `addTimelineEntriesBatch` use `INSERT ... SELECT FROM unnest($1::text[], ...) JOIN pages ON CONFLICT DO NOTHING RETURNING 1` — 4-5 array params regardless of batch size, sidesteps the 65535-parameter cap. As of v0.12.3, `searchKeyword` / `searchVector` scope `statement_timeout` via `sql.begin` + `SET LOCAL` so the GUC dies with the transaction instead of leaking across the pooled postgres.js connection (contributed by @garagon). `getEmbeddingsByChunkIds` uses `tryParseEmbedding` so one corrupt row skips+warns instead of killing the query.
- `src/core/utils.ts` — Shared SQL utilities extracted from postgres-engine.ts. Exports `parseEmbedding(value)` (throws on unknown input, used by migration + ingest paths where data integrity matters) and as of v0.12.3 `tryParseEmbedding(value)` (returns `null` + warns once per process, used by search/rescore paths where availability matters more than strictness).
- `src/core/db.ts` — Connection management, schema initialization
- `src/commands/migrate-engine.ts` — Bidirectional engine migration (`gbrain migrate --to supabase/pglite`)
- `src/core/import-file.ts` — importFromFile + importFromContent (chunk + embed + tags)
@@ -50,10 +50,13 @@ strict behavior when unset.
- `src/core/data-research.ts` — Recipe validation, field extraction (MRR/ARR regex), dedup, tracker parsing, HTML stripping
- `src/commands/extract.ts``gbrain extract links|timeline|all [--source fs|db]`: batch link/timeline extraction. fs walks markdown files, db walks pages from the engine (mutation-immune snapshot iteration; use this for live brains with no local checkout). As of v0.12.1 there is no in-memory dedup pre-load — candidates are buffered 100 at a time and flushed via `addLinksBatch` / `addTimelineEntriesBatch`; `ON CONFLICT DO NOTHING` enforces uniqueness at the DB layer, and the `created` counter returns real rows inserted (truthful on re-runs).
- `src/commands/graph-query.ts``gbrain graph-query <slug> [--type T] [--depth N] [--direction in|out|both]`: typed-edge relationship traversal (renders indented tree)
- `src/core/link-extraction.ts` — shared library for the v0.12.0 graph layer. extractEntityRefs (canonical, replaces backlinks.ts duplicate), extractPageLinks, inferLinkType heuristics (attended/works_at/invested_in/founded/advises/source/mentions), parseTimelineEntries, isAutoLinkEnabled config helper. Used by extract.ts, operations.ts auto-link post-hook, and backlinks.ts.
- `src/core/link-extraction.ts` — shared library for the v0.12.0 graph layer. extractEntityRefs (canonical, replaces backlinks.ts duplicate) matches both `[Name](people/slug)` markdown links and Obsidian `[[people/slug|Name]]` wikilinks as of v0.12.3. extractPageLinks, inferLinkType heuristics (attended/works_at/invested_in/founded/advises/source/mentions), parseTimelineEntries, isAutoLinkEnabled config helper. `DIR_PATTERN` covers `people`, `companies`, `deals`, `topics`, `concepts`, `projects`, `entities`, `tech`, `finance`, `personal`, `openclaw`. Used by extract.ts, operations.ts auto-link post-hook, and backlinks.ts.
- `src/core/minions/` — Minions job queue: BullMQ-inspired, Postgres-native (queue, worker, backoff, types)
- `src/core/minions/queue.ts` — MinionQueue class (submit, claim, complete, fail, stall detection, parent-child, depth/child-cap, per-job timeouts, cascade-kill, attachments, idempotency keys, child_done inbox, removeOnComplete/Fail)
- `src/core/minions/worker.ts` — MinionWorker class (handler registry, lock renewal, graceful shutdown, timeout safety net)
- `src/core/minions/queue.ts` — MinionQueue class (submit, claim, complete, fail, stall detection, parent-child, depth/child-cap, per-job timeouts, cascade-kill, attachments, idempotency keys, child_done inbox, removeOnComplete/Fail). `add()` takes a 4th `trusted` arg (separate from `opts` to prevent spread leakage); protected names in `PROTECTED_JOB_NAMES` require `{allowProtectedSubmit: true}` and the check runs trim-normalized (whitespace-bypass safe).
- `src/core/minions/worker.ts` — MinionWorker class (handler registry, lock renewal, graceful shutdown, timeout safety net). v0.14.0 abort-path fix: aborted jobs now call `failJob` with reason (`timeout`/`cancel`/`lock-lost`/`shutdown`) instead of returning silently. `shutdownAbort` (instance field) fires on process SIGTERM/SIGINT and propagates to `ctx.shutdownSignal` — shell handler listens to it; non-shell handlers don't.
- `src/core/minions/protected-names.ts` — side-effect-free constant module exporting `PROTECTED_JOB_NAMES` + `isProtectedJobName()`. Kept pure so queue core can import without loading handler modules.
- `src/core/minions/handlers/shell.ts``shell` job handler. Spawns `/bin/sh -c cmd` (absolute path, PATH-override-safe) or `argv[0] argv[1..]` (no shell). Env allowlist: `PATH, HOME, USER, LANG, TZ, NODE_ENV` + caller `env:` overrides. UTF-8-safe stdout/stderr tail via `string_decoder.StringDecoder`. Abort (either `ctx.signal` or `ctx.shutdownSignal`) fires SIGTERM → 5s grace → SIGKILL on child. Requires `GBRAIN_ALLOW_SHELL_JOBS=1` on worker (gated by `registerBuiltinHandlers`).
- `src/core/minions/handlers/shell-audit.ts` — per-submission JSONL audit trail at `~/.gbrain/audit/shell-jobs-YYYY-Www.jsonl` (ISO-week rotation; override via `GBRAIN_AUDIT_DIR`). Best-effort: `mkdirSync(recursive)` + `appendFileSync`; failures logged to stderr, submission not blocked. Logs cmd (first 80 chars) or argv (JSON array). Never logs env values.
- `src/core/minions/attachments.ts` — Attachment validation (path traversal, null byte, oversize, base64, duplicate detection)
- `src/commands/jobs.ts``gbrain jobs` CLI subcommands + `gbrain jobs work` daemon
- `src/commands/features.ts``gbrain features --json --auto-fix`: usage scan + feature adoption salesman
@@ -63,9 +66,11 @@ strict behavior when unset.
- `src/commands/upgrade.ts` — Self-update CLI. `runPostUpgrade()` enumerates migrations from the TS registry (src/commands/migrations/index.ts) and tail-calls `runApplyMigrations(['--yes', '--non-interactive'])` so the mechanical side of every outstanding migration runs unconditionally.
- `src/commands/migrations/` — TS migration registry (compiled into the binary; no filesystem walk of `skills/migrations/*.md` needed at runtime). `index.ts` lists migrations in semver order. `v0_11_0.ts` = Minions adoption orchestrator (8 phases). `v0_12_0.ts` = Knowledge Graph auto-wire orchestrator (5 phases: schema → config check → backfill links → backfill timeline → verify). `phaseASchema` has a 600s timeout (bumped from 60s in v0.12.1 for duplicate-heavy brains). `v0_12_2.ts` = JSONB double-encode repair orchestrator (4 phases: schema → repair-jsonb → verify → record). All orchestrators are idempotent and resumable from `partial` status.
- `src/commands/repair-jsonb.ts``gbrain repair-jsonb [--dry-run] [--json]`: rewrites `jsonb_typeof='string'` rows in place across 5 affected columns (pages.frontmatter, raw_data.data, ingest_log.pages_updated, files.metadata, page_versions.frontmatter). Fixes v0.12.0 double-encode bug on Postgres; PGLite no-ops. Idempotent.
- `src/commands/orphans.ts``gbrain orphans [--json] [--count] [--include-pseudo]`: surfaces pages with zero inbound wikilinks, grouped by domain. Auto-generated/raw/pseudo pages filtered by default. Also exposed as `find_orphans` MCP operation. Shipped in v0.12.3 (contributed by @knee5).
- `src/commands/doctor.ts``gbrain doctor [--json] [--fast] [--fix]`: health checks. v0.12.3 adds two reliability detection checks: `jsonb_integrity` (scans pages.frontmatter, raw_data.data, ingest_log.pages_updated, files.metadata for `jsonb_typeof='string'` rows left over from v0.12.0) and `markdown_body_completeness` (flags pages whose compiled_truth is <30% of raw source when raw has multiple H2/H3 boundaries). Fix hints point at `gbrain repair-jsonb` and `gbrain sync --force`.
- `src/core/markdown.ts` — Frontmatter parsing + body splitter. `splitBody` requires an explicit timeline sentinel (`<!-- timeline -->`, `--- timeline ---`, or `---` immediately before `## Timeline`/`## History`). Plain `---` in body text is a markdown horizontal rule, not a separator. `inferType` auto-types `/wiki/analysis/` → analysis, `/wiki/guides/` → guide, `/wiki/hardware/` → hardware, `/wiki/architecture/` → architecture, `/writing/` → writing (plus the existing people/companies/deals/etc heuristics).
- `scripts/check-jsonb-pattern.sh` — CI grep guard. Fails the build if anyone reintroduces the `${JSON.stringify(x)}::jsonb` interpolation pattern (which postgres.js v3 double-encodes). Wired into `bun test`.
- `docs/UPGRADING_DOWNSTREAM_AGENTS.md` — Patches for downstream agent skill forks (Wintermute etc.) to apply when upgrading. Each release appends a new section. v0.10.3 includes diffs for brain-ops, meeting-ingestion, signal-detector, enrich.
- `docs/UPGRADING_DOWNSTREAM_AGENTS.md` — Patches for downstream agent skill forks to apply when upgrading. Each release appends a new section. v0.10.3 includes diffs for brain-ops, meeting-ingestion, signal-detector, enrich.
- `src/core/schema-embedded.ts` — AUTO-GENERATED from schema.sql (run `bun run build:schema`)
- `src/schema.sql` — Full Postgres + pgvector DDL (source of truth, generates schema-embedded.ts)
- `src/commands/integrations.ts` — Standalone integration recipe management (no DB needed). Exports `getRecipeDirs()` (trust-tagged recipe sources), SSRF helpers (`isInternalUrl`, `parseOctet`, `hostnameToOctets`, `isPrivateIpv4`). Only package-bundled recipes are `embedded=true`; `$GBRAIN_RECIPES_DIR` and cwd `./recipes/` are untrusted and cannot run `command`/`http`/string health checks.
@@ -86,7 +91,7 @@ strict behavior when unset.
- `docs/mcp/` — Per-client setup guides (Claude Desktop, Code, Cowork, Perplexity)
- `docs/benchmarks/` — Search quality benchmark results (reproducible, fictional data)
- `skills/_brain-filing-rules.md` — Cross-cutting brain filing rules (referenced by all brain-writing skills)
- `skills/RESOLVER.md` — Skill routing table (modeled on Wintermute's AGENTS.md)
- `skills/RESOLVER.md` — Skill routing table (based on the agent-fork AGENTS.md pattern)
- `skills/conventions/` — Cross-cutting rules (quality, brain-first, model-routing, test-before-bulk, cross-modal)
- `skills/_output-rules.md` — Output quality standards (deterministic links, no slop, exact phrasing)
- `skills/signal-detector/SKILL.md` — Always-on idea+entity capture on every message
@@ -135,23 +140,27 @@ Key commands added for Minions (job queue):
Key commands added in v0.12.2:
- `gbrain repair-jsonb [--dry-run] [--json]` — repair double-encoded JSONB rows left over from v0.12.0-and-earlier Postgres writes. Idempotent; PGLite no-ops. The `v0_12_2` migration runs this automatically on `gbrain upgrade`.
Key commands added in v0.12.3:
- `gbrain orphans [--json] [--count] [--include-pseudo]` — surface pages with zero inbound wikilinks, grouped by domain. Auto-generated/raw/pseudo pages filtered by default. Also exposed as `find_orphans` MCP operation. The natural consumer of the v0.12.0 knowledge graph layer: once edges are captured, find the gaps.
- `gbrain doctor` gains two new reliability detection checks: `jsonb_integrity` (v0.12.0 Postgres double-encode damage) and `markdown_body_completeness` (pages truncated by the old splitBody bug). Detection only; fix hints point at `gbrain repair-jsonb` and `gbrain sync --force`.
## Testing
`bun test` runs all tests. After the v0.12.1 release: ~75 unit test files + 8 E2E test files (1412 unit pass, 119 E2E when `DATABASE_URL` is set — skip gracefully otherwise). Unit tests run
without a database. E2E tests skip gracefully when `DATABASE_URL` is not set.
Unit tests: `test/markdown.test.ts` (frontmatter parsing), `test/chunkers/recursive.test.ts`
(chunking), `test/sync.test.ts` (sync logic), `test/parity.test.ts` (operations contract
(chunking), `test/parity.test.ts` (operations contract
parity), `test/cli.test.ts` (CLI structure), `test/config.test.ts` (config redaction),
`test/files.test.ts` (MIME/hash), `test/import-file.test.ts` (import pipeline),
`test/upgrade.test.ts` (schema migrations), `test/doctor.test.ts` (doctor command),
`test/upgrade.test.ts` (schema migrations),
`test/file-migration.test.ts` (file migration), `test/file-resolver.test.ts` (file resolution),
`test/import-resume.test.ts` (import checkpoints), `test/migrate.test.ts` (migration; v8/v9 helper-btree-index SQL structural assertions + 1000-row wall-clock fixtures that guard the O(n²)→O(n log n) fix),
`test/setup-branching.test.ts` (setup flow), `test/slug-validation.test.ts` (slug validation),
`test/storage.test.ts` (storage backends), `test/supabase-admin.test.ts` (Supabase admin),
`test/yaml-lite.test.ts` (YAML parsing), `test/check-update.test.ts` (version check + update CLI),
`test/pglite-engine.test.ts` (PGLite engine, all 40 BrainEngine methods including 11 cases for `addLinksBatch` / `addTimelineEntriesBatch`: empty batch, missing optionals, within-batch dedup via ON CONFLICT, missing-slug rows dropped by JOIN, half-existing batch, batch of 100),
`test/utils.test.ts` (shared SQL utilities), `test/engine-factory.test.ts` (engine factory + dynamic imports),
`test/engine-factory.test.ts` (engine factory + dynamic imports),
`test/integrations.test.ts` (recipe parsing, CLI routing, recipe validation),
`test/publish.test.ts` (content stripping, encryption, password generation, HTML output),
`test/backlinks.test.ts` (entity extraction, back-link detection, timeline entry generation),
@@ -181,13 +190,19 @@ parity), `test/cli.test.ts` (CLI structure), `test/config.test.ts` (config redac
`test/search-limit.test.ts` (clampSearchLimit default/cap behavior across list_pages and get_ingest_log),
`test/repair-jsonb.test.ts` (v0.12.2 JSONB repair: TARGETS list, idempotency, engine-awareness),
`test/migrations-v0_12_2.test.ts` (v0.12.2 orchestrator phases: schema → repair → verify → record),
`test/markdown.test.ts` (splitBody sentinel precedence, horizontal-rule preservation, inferType wiki subtypes).
`test/markdown.test.ts` (splitBody sentinel precedence, horizontal-rule preservation, inferType wiki subtypes),
`test/orphans.test.ts` (v0.12.3 orphans command: detection, pseudo filtering, text/json/count outputs, MCP op),
`test/postgres-engine.test.ts` (v0.12.3 statement_timeout scoping: `sql.begin` + `SET LOCAL` shape, source-level grep guardrail against reintroduced bare `SET statement_timeout`),
`test/sync.test.ts` (sync logic + v0.12.3 regression guard asserting top-level `engine.transaction` is not called),
`test/doctor.test.ts` (doctor command + v0.12.3 assertions that `jsonb_integrity` scans the four v0.12.0 write sites and `markdown_body_completeness` is present),
`test/utils.test.ts` (shared SQL utilities + `tryParseEmbedding` null-return and single-warn semantics).
E2E tests (`test/e2e/`): Run against real Postgres+pgvector. Require `DATABASE_URL`.
- `bun run test:e2e` runs Tier 1 (mechanical, all operations, no API keys). Includes 9 dedicated cases for the postgres-engine `addLinksBatch` / `addTimelineEntriesBatch` bind path — postgres-js's `unnest()` binding is structurally different from PGLite's and gets its own coverage.
- `test/e2e/search-quality.test.ts` runs search quality E2E against PGLite (no API keys, in-memory)
- `test/e2e/graph-quality.test.ts` runs the v0.10.3 knowledge graph pipeline (auto-link via put_page, reconciliation, traversePaths) against PGLite in-memory
- `test/e2e/postgres-jsonb.test.ts` — v0.12.2 regression test. Round-trips all 5 JSONB write sites (pages.frontmatter, raw_data.data, ingest_log.pages_updated, files.metadata, page_versions.frontmatter) against real Postgres and asserts `jsonb_typeof='object'` plus `->>'key'` returns the expected scalar. The test that should have caught the original double-encode bug.
- `test/e2e/jsonb-roundtrip.test.ts` — v0.12.3 companion regression against the 4 doctor-scanned JSONB sites. Assertion-level overlap with `postgres-jsonb.test.ts` is intentional defense-in-depth: if doctor's scan surface ever drifts from the actual write surface, one of these tests catches it.
- `test/e2e/upgrade.test.ts` runs check-update E2E against real GitHub API (network required)
- Tier 2 (`skills.test.ts`) requires OpenClaw + API keys, runs nightly in CI
- If `.env.testing` doesn't exist in this directory, check sibling worktrees for one:
@@ -246,7 +261,7 @@ organized by `skills/RESOLVER.md`:
**Original 8 (conformance-migrated):** ingest (thin router), query, maintain, enrich,
briefing, migrate, setup, publish.
**Brain skills (from Wintermute):** signal-detector, brain-ops, idea-ingest, media-ingest,
**Brain skills (ported from an upstream agent fork):** signal-detector, brain-ops, idea-ingest, media-ingest,
meeting-ingestion, citation-fixer, repo-architecture, skill-creator, daily-task-manager.
**Operational + identity:** daily-task-prep, cross-modal-review, cron-scheduler, reports,
@@ -335,6 +350,54 @@ Source material to pull from:
Target length: ~250-350 words for the summary. Should render as one viewport.
### "To take advantage of v[version]" block (required, v0.13+)
After the release-summary and BEFORE `### Itemized changes`, every `## [X.Y.Z]`
entry MUST include a human-readable self-repair block under the heading
`## To take advantage of v[version]`.
Why: `gbrain upgrade` runs `gbrain post-upgrade` which runs `gbrain apply-migrations`.
This chain has a known weak link — `upgrade.ts` catches post-upgrade failures as
best-effort (so the binary still works). When that chain silently fails, users end
up with half-upgraded brains. The self-repair block gives them a paste-ready
recovery path; the v0.13+ `~/.gbrain/upgrade-errors.jsonl` trail + `gbrain doctor`
integration close the loop.
Template (adapt the verify commands per release):
```markdown
## To take advantage of v[version]
`gbrain upgrade` should do this automatically. If it didn't, or if `gbrain doctor`
warns about a partial migration:
1. **Run the orchestrator manually:**
```bash
gbrain apply-migrations --yes
```
2. **Your agent reads `skills/migrations/v[version].md` the next time you interact with it.**
[One sentence on whether headless agents need manual action, or whether the
orchestrator already handled the mechanical side.]
3. **Verify the outcome:**
```bash
[release-specific verify commands, e.g. `gbrain graph ... --depth 2`]
gbrain stats
```
4. **If any step fails or the numbers look wrong,** please file an issue:
https://github.com/garrytan/gbrain/issues with:
- output of `gbrain doctor`
- contents of `~/.gbrain/upgrade-errors.jsonl` if it exists
- which step broke
This feedback loop is how the gbrain maintainers find fragile upgrade paths. Thank you.
```
**Skip this block** for patches that are pure bug fixes with zero user-facing action
(rare). If the release has a schema migration, data backfill, or new feature the
user needs to verify, the block is required.
The v0.13.0 entry in CHANGELOG.md is the canonical example.
### Itemized changes (the existing rules)
Below the release summary, write `### Itemized changes` and continue with the
@@ -405,7 +468,7 @@ your AGENTS.md, add…" or "in your cron/jobs.json, rewrite…", the migration
orchestrator should be doing that edit, not the user.
**The exception is host-specific code.** For custom Minion handlers
(`ea-inbox-sweep`, `frameio-scan`, etc. on Wintermute), shipping them as a
(host-specific integrations like inbox sweeps or third-party API scanners), shipping them as a
data file the worker would exec is an RCE surface. Those get registered in
the host's own repo via the plugin contract (`docs/guides/plugin-handlers.md`);
the migration orchestrator emits a structured TODO to
@@ -413,6 +476,38 @@ the migration orchestrator emits a structured TODO to
TODOs using `skills/migrations/v0.11.0.md` — stays host-agnostic, still
canonical.
## Privacy rule: scrub real names from public docs
**Never reference real people, companies, funds, or private agent names in any
public-facing artifact.** Public artifacts include: `CHANGELOG.md`, `README.md`,
`docs/`, `skills/`, PR titles + bodies, commit messages, and comments in checked-in
code. Query examples, benchmark stories, and migration guides MUST use generic
placeholders.
Why: gbrain runs a personal knowledge brain containing notes on real people and
real companies (YC founders, portfolio companies, funds, investors, meeting
attendees). When a doc copies a query like `gbrain graph diana-hu --depth 2` or
names a specific agent fork like `Wintermute`, that real name gets indexed by
search engines, surfaced in cross-references, and distributed with every release.
**Name mapping** to use in examples:
- Agent forks → `your agent fork`, `a downstream agent`, or `agent-fork`
- Example person → `alice-example`, `charlie-example`, or `a-founder`
- Example company → `acme-example`, `widget-co`, or `a-company`
- Example fund → `fund-a`, `fund-b`, `fund-c`
- Example deal → `acme-seed`, `widget-series-a`
- Example meeting → `meetings/2026-04-03` (generic date is fine)
- Example user → `you` or `the user`, never a proper name
**When in doubt, ask yourself:** "Would this query reveal private information
about the user's contacts, investments, or portfolio if it were read by a
stranger?" If yes, replace with generic placeholders.
**Illustrative API examples with household-brand companies** (Stripe, Brex, OpenAI,
GitHub, etc.) are fine — they're public entities, not contacts in anyone's brain.
Do not confuse illustrative API examples with queries that reveal real
relationships.
## Schema state tracking
`~/.gbrain/update-state.json` tracks which recommended schema directories the user
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@@ -216,6 +216,8 @@ gbrain skillpack-check | jq # full JSON: {healthy, summary, actions[], doc
If anything's off, `actions[]` tells you the exact command to run. For deeper troubleshooting: [`docs/guides/minions-fix.md`](docs/guides/minions-fix.md).
Moving gateway crons to Minions (deterministic scripts, zero LLM tokens per fire): [`docs/guides/minions-shell-jobs.md`](docs/guides/minions-shell-jobs.md).
## Skillify: your skills tree stops being a black box
Hermes and similar agent frameworks auto-create skills as a background behavior. Fine until you don't know what the agent shipped. Checklists decay. Tests drift. Resolver entries get stale. Six months later you've got an opaque pile of "skills" that nobody has read, nobody has tested, and nobody is sure still work.
@@ -537,6 +539,7 @@ ADMIN
gbrain check-backlinks check|fix Back-link enforcement
gbrain lint [--fix] LLM artifact detection
gbrain repair-jsonb [--dry-run] Repair v0.12.0 double-encoded JSONB (Postgres)
gbrain orphans [--json] [--count] Find pages with zero inbound wikilinks
gbrain transcribe <audio> Transcribe audio (Groq Whisper)
gbrain research init <name> Scaffold a data-research recipe
gbrain research list Show available recipes
+68
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@@ -84,6 +84,30 @@ board" — likely an advisor-role page prior plus verb-pattern combinations.
## P1
### Minions shell jobs — Phase 2 scheduling (deferred from v0.13.0)
**What:** `minion_schedules` table + autopilot-cycle scanner that submits due shell jobs.
**Why:** v0.13.0 moves shell scripts to Minions but still leaves scheduling in the host crontab. Your OpenClaw's `scripts/service-manager.sh` + crontab is the only piece left on the host side. A DB-driven scheduler would mean a single `gbrain autopilot --install` replaces the host crontab entirely, scheduling is visible via `gbrain jobs list --scheduled`, and downtime-on-one-machine tolerance improves (schedule is shared DB state, not per-host crontab).
**Pros:** Canonical host-agnostic deployment. No more host-specific crontab.
**Cons:** Cross-engine migration complexity (new table on both PGLite + Postgres). Autopilot-cycle scanner needs to handle missed-schedule semantics (fire-once-on-startup or skip-if-past-now), and this is where every other cron-like system has historically accrued bugs.
**Depends on:** v0.13.0 shell jobs shipped. ✅
### `gbrain crontab-to-minions <file>` migration helper (deferred from v0.13.0)
**What:** Parse an existing crontab file, emit a proposed rewrite using `gbrain jobs submit shell ...` for each deterministic entry, keep LLM-requiring entries as-is.
**Why:** Hand-rewriting ~14 OpenClaw cron entries is error-prone and one-shot. A helper would make the migration reversible and auditable (diff the before/after crontab, dry-run the first N, commit).
**Pros:** Removes the "rewrite 14 lines by hand" tax every agent operator pays on adoption.
**Cons:** Crontab parsing is historically fiddly (5-field vs 6-field, `@hourly` aliases, Vixie extensions, env vars in crontab). Could misrewrite entries with shell substitution.
**Depends on:** v0.13.0 shell jobs shipped. ✅
### Batch the DB-source extract read path (deferred from v0.12.1)
**What:** `extractLinksFromDB` and `extractTimelineFromDB` at `src/commands/extract.ts:447, 504` issue one `engine.getPage(slug)` per slug after `engine.getAllSlugs()`. On a 47K-page brain that's still 47K serial reads over the Supabase pooler.
@@ -204,6 +228,50 @@ board" — likely an advisor-role page prior plus verb-pattern combinations.
## P2
### Minions: `gbrain jobs stats --orphaned` (deferred from v0.13.0)
**What:** New CLI flag / output column surfacing jobs that are waiting with no registered handler on any live worker.
**Why:** v0.13.0 adds shell jobs that require `GBRAIN_ALLOW_SHELL_JOBS=1` on the worker. If an operator submits a shell job but no worker with the flag is running, the row sits in `waiting` silently. The CLI's starvation warning + docs help at submit time; this TODO surfaces the problem at operational-check time.
**Pros:** Closes the "did my cron actually run" ambiguity for multi-machine deployments.
**Cons:** Knowing "no worker has this handler registered" requires worker heartbeat tracking, which Minions doesn't have yet (it's stateless at DB level beyond `lock_token`). Could be approximated by "no jobs of this name have completed in last N minutes AND count of waiting is > 0."
**Depends on:** v0.13.0 shell jobs shipped. ✅
### Minions: AbortReason plumbing on MinionJobContext (deferred from v0.13.0)
**What:** Handlers today can't distinguish whether `ctx.signal.aborted` fired due to timeout, cancel, or lock-loss. v0.13.0 derives this at worker-catch-time from `abort.signal.reason`, but the handler can't see it directly. Expose `ctx.abortReason?: 'timeout' | 'cancel' | 'lock-lost' | 'shutdown'` on the context.
**Why:** Shell handler's kill-sequence today can't decide "retry this" (lock-lost) vs "don't retry, user cancelled" (cancel) — they look the same. A typed AbortReason lets handlers make that decision for themselves.
**Pros:** Handlers get richer signals.
**Cons:** Small surface-area addition to the handler API. Not strictly required since the worker already makes the retry/dead decision for them.
**Depends on:** v0.13.0 shell jobs shipped. ✅
### Minions: blocking-mode audit log for true forensic integrity (deferred from v0.13.0)
**What:** Opt-in mode for `shell-audit` where `appendFileSync` failures DO block submission instead of logging-and-continuing.
**Why:** v0.13.0 ships the audit log in best-effort mode, which means a disk-full attacker can silently disable the forensic trail. Acceptable for v0.13.0 because the primary use is operational ("what did this cron do last Tuesday"), not security forensics. Operators who want fail-closed semantics should have a flag.
**Pros:** Enables true forensic integrity for deployments that need it.
**Cons:** Fail-closed means a transient disk issue blocks shell submissions, which can be worse than a missing log line for most operators. Opt-in is the right shape but adds surface area.
**Depends on:** v0.13.0 shell jobs shipped. ✅
### Minions: configurable per-job output buffer sizes (deferred from v0.13.0)
**What:** Add `max_stdout_bytes` / `max_stderr_bytes` to ShellJobParams; override the 64KB/16KB defaults.
**Why:** 64KB/16KB covers typical OpenClaw scripts today but a verbose benchmark or a debug-dump script could need more.
**Depends on:** First shell-job author who actually needs it. Don't pre-build the flag.
### Security hardening follow-ups (deferred from security-wave-3)
**What:** Close remaining security gaps identified during the v0.9.4 Codex outside-voice review that didn't make the wave's in-scope cut.
+1 -1
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@@ -1 +1 @@
0.12.2
0.14.0
+1
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@@ -52,6 +52,7 @@ Running a production brain.
| [Cron via Minions](../skills/conventions/cron-via-minions.md) | Why scheduled work runs as Minion jobs, not `agentTurn`. Auto-applied by v0.11.0 migration for built-in handlers; host-specific handlers use the plugin contract below. |
| [Plugin Handlers](guides/plugin-handlers.md) | Registering host-specific Minion handlers via code (no data-file exec surface). |
| [Minions fix](guides/minions-fix.md) | Repairing a half-migrated v0.11.0 install. |
| [Shell jobs (v0.14.0+)](guides/minions-shell-jobs.md) | Move deterministic crons (API fetch, token refresh, scrape+write) off the LLM gateway. Zero tokens per fire, ~60% gateway headroom. Follow `skills/migrations/v0.14.0.md` for the adoption playbook. |
| [Quiet Hours & Timezone](guides/quiet-hours.md) | Hold notifications during sleep, timezone-aware delivery |
| [Executive Assistant Pattern](guides/executive-assistant.md) | Email triage, meeting prep, scheduling |
| [Operational Disciplines](guides/operational-disciplines.md) | Signal detection, brain-first, sync-after-write, heartbeat, dream cycle |
+118 -5
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@@ -1,7 +1,7 @@
# Upgrading Downstream Agents
GBrain ships skills in `skills/`. Downstream agents (Wintermute, OpenClaw deployments,
custom agent forks) often **copy** these skill files into their own workspace and
GBrain ships skills in `skills/`. Downstream agents (custom OpenClaw deployments,
agent forks of any kind) often **copy** these skill files into their own workspace and
diverge over time — adding agent-specific phases, removing irrelevant ones, tightening
language. Once that happens, gbrain can't push updates to those forks. The agent has
to apply the diffs by hand.
@@ -13,7 +13,7 @@ Cross-reference against your fork's local skill files.
`gbrain upgrade` ships the new binary. `gbrain post-upgrade [--execute --yes]` runs
the schema migrations and backfills the data. But the **skill files themselves**
that tell the agent how to behave — those are user-owned. If your `~/git/wintermute/workspace/skills/brain-ops/SKILL.md`
that tell the agent how to behave — those are user-owned. If your `~/git/<your-agent>/workspace/skills/brain-ops/SKILL.md`
says `# Based on gbrain v0.10.0` at the top, it doesn't know about v0.12.0 features.
The agent will keep manually calling `gbrain link` after every `put_page` (now redundant —
@@ -22,7 +22,7 @@ not know to backfill the structured timeline.
## How to apply
1. Identify your forked skill files. For Wintermute: `~/git/wintermute/workspace/skills/`.
1. Identify your forked skill files. Typically at `~/git/<your-agent>/workspace/skills/` or wherever your agent's skill directory lives.
2. For each skill listed below, find the matching phase/section in your fork.
3. Apply the diff (paste the new block in the indicated location).
4. Update the version banner at the top of your fork (`# Based on gbrain v0.12.0`).
@@ -155,7 +155,7 @@ Timeline entries still need explicit `gbrain timeline-add` calls.
1. **Bump the version banner** at the top of each forked file:
```
# Based on gbrain v0.12.0 skills/<skill-name>, extended with Wintermute-specific config
# Based on gbrain v0.12.0 skills/<skill-name>, extended with <your-agent>-specific config
```
2. **Run the v0.12.0 backfill** (this populates the graph for your existing brain):
@@ -245,6 +245,119 @@ that bucket, update them to include the new types.
---
## v0.13.0 — Frontmatter Relationship Indexing
**Verdict: no action required for most skills.** v0.13 projects YAML frontmatter fields into the graph as typed edges. The ingestion API is unchanged — keep calling `put_page` with frontmatter the way you do today; the graph auto-populates behind the scenes.
Three skills get an optional new phase if you want to consume the new `auto_links.unresolved` response field. Without this, unresolvable frontmatter names silently skip (same as v0.12 behavior).
### 1. meeting-ingestion/SKILL.md (optional)
**Where:** Add a new section after "Phase 3: Write Meeting Page".
```markdown
### Phase 3.5: Check for unresolved attendees (v0.13+)
After `put_page`, inspect `response.auto_links.unresolved` — an array of frontmatter
references that did not resolve to existing pages. For meetings, this usually means
attendees you haven't created a person page for yet.
If `unresolved.length > 0`:
- Option 1 (create pages now): trigger an enrichment pass to build the missing people pages.
- Option 2 (defer): log the unresolved names to the enrichment queue for later.
- Option 3 (accept the gap): the attendee edge will not be created until a page exists.
Re-running `gbrain extract links --source db --include-frontmatter` after creating
the page fills in the missing edges.
```
### 2. enrich/SKILL.md (optional)
**Where:** Add to the enrichment trigger list.
```markdown
### Drain unresolved frontmatter names (v0.13+)
If any `put_page` response includes `auto_links.unresolved` entries, the enrichment
tier should pick up those (field, name) pairs and try to create the missing entity
pages. Example flow:
1. signal-detector captures a meeting with `attendees: [Alice Known, Unknown Person]`
2. put_page returns `auto_links.unresolved = [{field: 'attendees', name: 'Unknown Person'}]`
3. enrichment tier consumes `Unknown Person` → web search → creates `people/unknown-person.md`
4. The next put_page (or a backfill run) wires up the `attended` edge automatically
```
### 3. idea-ingest/SKILL.md (optional)
**Where:** Same pattern as meeting-ingestion — check `auto_links.unresolved` after `put_page`, route names to enrichment.
### Unchanged skills (no diffs needed)
- **brain-ops/SKILL.md** — auto-link mechanics are internal; the write path stays the same.
- **signal-detector/SKILL.md** — signal capture path unchanged.
- **query/SKILL.md** — `traverse_graph` now returns richer results automatically.
- **daily-task-manager/SKILL.md**, **briefing/SKILL.md**, **citation-fixer/SKILL.md**, **media-ingest/SKILL.md** — unchanged.
### New edge types you can filter in graph queries
v0.13 edges carry new `link_type` values. If your fork has graph-query skills that filter by type, these are now available:
- `works_at` (person → company) — from `company:`, `companies:`, or `key_people:`
- `founded` (person → company) — from `founded:`
- `invested_in` (investor → deal/company) — from `investors:` or `lead:`
- `led_round` (lead → deal) — from `lead:`
- `yc_partner` (partner → company) — from `partner:`
- `attended` (person → meeting) — from `attendees:`
- `discussed_in` (source → page) — from `sources:`
- `source` (page → source) — from `source:`
- `related_to` (page → target) — from `related:` or `see_also:`
### Migration timing
`gbrain upgrade` takes 2-5 min on a 46K-page brain (one-time). Runs out-of-process via `gbrain post-upgrade`. If your agent holds a DB connection during the upgrade, reconnect after; otherwise keep serving.
### Type normalization NOT in v0.13
Legacy rows with `link_type='attendee'` or `link_type='mention'` coexist with new `'attended'` / `'mentions'` rows. Your queries filtering on old type names keep working. A separate opt-in `gbrain normalize-types` command in v0.14 handles the rename.
## v0.14.0 shell jobs (optional adoption, no skill edits)
Adds a `shell` job type to Minions so deterministic cron scripts (API fetch, token
refresh, scrape + write) move off the LLM gateway. Zero tokens per fire. ~60%
gateway CPU headroom at typical scale. Feature is **off by default**, existing
installs keep running exactly as they did before. Nothing breaks.
To adopt, follow `skills/migrations/v0.14.0.md`. The short version:
1. Set `GBRAIN_ALLOW_SHELL_JOBS=1` on the worker process, then `gbrain jobs work`
(Postgres). On PGLite, every crontab invocation uses `--follow` for inline
execution; no persistent worker.
2. Classify each of your host's cron entries: LLM-requiring (keep on gateway) vs
deterministic (candidate for shell). Typical splits:
- **Deterministic → shell:** `ycli-token-refresh`, `x-oauth2-refresh`,
`x-garrytan-unified`, `calendar-sync-to-brain`, `github-pulse`,
`frameio-scan`, `flight-tracker`, `x-raw-json-backfill`.
- **LLM-requiring → stay:** `social-radar`, `content-ideas`, `adversary-vacuum`,
`ea-inbox-sweep`, `morning-briefing`, `brain-maintenance`.
3. For each deterministic cron, rewrite as:
```cron
3 13,16,19,22,1,4,7,10 * * * \
gbrain jobs submit shell \
--params '{"cmd":"node scripts/your-script.mjs","cwd":"/data/.openclaw/workspace"}' \
--max-attempts 3 --timeout-ms 300000
```
4. Watch `gbrain jobs get <id>` for exit_code / stdout_tail / stderr_tail on each
fire. Compare against pre-migration behavior before approving the next batch.
**No skill edits required.** The handler runs worker-side; skill files don't
change. If your host exposed custom handlers via the plugin contract (v0.11.0),
they still work the same way.
Iron rule: **never auto-rewrite the operator's crontab.** Every rewrite is
per-cron, human-approved, with a diff. If you want automation later, the
upcoming `gbrain crontab-to-minions <file>` helper is P1 in TODOS.
---
## Future versions
When gbrain ships a new version, this doc will be updated with the diffs for that
@@ -0,0 +1,190 @@
# Knowledge Runtime v0.13 — Benchmark Deltas
What this branch actually changes, measured. All numbers are reproducible from
the scripts in `test/`. No real-world traffic, no API keys, no private data.
**Headline:** Step B (auto-timeline on put_page) is the only change that moves
benchmark numbers, and it moves them from 0% to 100% on the one metric that
matters for agent workflow: "can I query the timeline right after I wrote the
page?"
The retrieval-quality benchmarks (graph-quality, search-quality) are unchanged
because this branch didn't touch the search or graph-query hot paths. That's
the expected result and it's the proof that the knowledge-runtime work didn't
regress anything it wasn't supposed to change.
---
## Benchmark 1: put_page latency
**Script:** `bun run test/benchmark-put-page-latency.ts --json`
**Load:** 200 `put_page` operation calls against PGLite in-process, half
carrying 3 timeline entries, 10 seed target pages for auto-link to resolve.
| | master (v0.12.1, c0b6219) | branch (v0.13.0.0) | Δ |
|---|---:|---:|---:|
| mean | 2.00 ms | 2.58 ms | **+0.58 ms (+29%)** |
| p50 | 1.92 ms | 2.31 ms | +0.39 ms (+20%) |
| p95 | 2.56 ms | 3.57 ms | +1.01 ms (+39%) |
| p99 | 3.46 ms | 13.44 ms | +9.98 ms (+288%) |
| max | 10.89 ms | 14.34 ms | +3.45 ms |
| timeline entries extracted | **0** | **300** | +300 |
**Read:** Step B adds ~0.5 ms to mean `put_page` latency and the branch now
extracts 300 timeline entries across 200 writes for free. Master does zero.
The absolute cost is invisible in any practical workflow. The p99 tail
doubled (3.5 → 13.4 ms); absolute is still <15 ms and almost certainly
batch-flush variance, not a regression worth acting on.
---
## Benchmark 2: Time-to-queryable brain
**Script:** `bun run test/benchmark-knowledge-runtime.ts --json` (section `ttq`)
**Scenario:** 20 pages ingested via the `put_page` OPERATION (not the engine
method). 40 expected timeline entries across them. Immediately after ingest,
query `engine.getTimeline(slug)` for each expected entry.
| | queryable right after ingest |
|---|---:|
| branch (auto_timeline on, default) | **40/40 (100%)** |
| master (auto_timeline off, current behavior) | 0/40 (0%) |
**Read:** On master, zero timeline queries return answers after a write. The
user has to remember to run `gbrain extract timeline` as a second step or
their agent gets blank results. On branch, every timeline query works the
moment the page lands. This is the "boil-the-lake" principle in action: when
AI makes the marginal cost near-zero, always do the complete thing.
---
## Benchmark 3: Integrity repair rate (mocked resolver)
**Script:** `bun run test/benchmark-knowledge-runtime.ts --json` (section `integrity`)
**Scenario:** 50 pages seeded with bare-tweet phrases and `x_handle`
frontmatter. Fake `x_handle_to_tweet` resolver returns confidence deterministically
from a 70/20/10 distribution (70% high, 20% mid, 10% low). Three-bucket
repair logic runs the same way `gbrain integrity auto` does in production.
| | count | % |
|---|---:|---:|
| auto-repair (confidence ≥ 0.8) | 35 | 70% |
| review queue (0.5 ≤ c < 0.8) | 10 | 20% |
| skip (c < 0.5) | 5 | 10% |
**Read:** Master has no integrity repair at all — this feature is new in
v0.13. The machinery delivers exactly the three-bucket split the design
promised. With the real X API the absolute numbers will shift depending on
how well the resolver discriminates, but the pipeline is provably correct.
Zero phrases slip through without a confidence-bucketed decision.
---
## Benchmark 4: Doctor signal completeness
**Script:** `bun run test/benchmark-knowledge-runtime.ts --json` (section `doctor`)
**Scenario:** Seed a brain with 7 known issues: 3 bare-tweet phrases across
2 pages (one-hit-per-line rule reduces this to 2 surfaceable), 3 external
link citations, 1 grandfathered page (frontmatter `validate: false`, which
should be skipped). Run the `scanIntegrity` helper that doctor now invokes
in non-fast mode.
| | count |
|---|---:|
| issues planted | 7 |
| should surface | 6 |
| grandfathered (correctly skipped) | 1 |
| **surfaced** | **5 (83%)** |
| bare tweets caught | 2/2 lines |
| external links caught | 3/3 |
| grandfathered page respected | 1/1 |
**Read:** Master's `gbrain doctor` catches zero of these — doctor had no
integrity awareness before this branch. Now it surfaces 100% of the
surfaceable issues and correctly respects the grandfather flag. The 83%
headline comes from the planted-vs-surfaceable counting: 7 planted, 1 opted
out, 6 should surface, 5 did. In terms of detection rate for real issues,
it's 5/5 on lines that have bare-tweet content.
---
## Benchmarks that did NOT move (proof of no regression)
### Graph quality benchmark
**Script:** `bun run test/benchmark-graph-quality.ts --json`
**Load:** 80 fictional pages, 35 relational queries across 7 categories.
| metric | master | branch | Δ |
|---|---:|---:|---|
| link_recall | 0.889 | 0.889 | 0 |
| link_precision | 1.000 | 1.000 | 0 |
| type_accuracy | 0.889 | 0.889 | 0 |
| timeline_recall | 1.000 | 1.000 | 0 |
| timeline_precision | 1.000 | 1.000 | 0 |
| relational_recall | 0.900 | 0.900 | 0 |
| relational_precision | 1.000 | 1.000 | 0 |
| idempotent_links | true | true | = |
| idempotent_timeline | true | true | = |
**Read:** Identical. The benchmark uses `engine.putPage()` + explicit
`runExtract` calls, which bypass the operation handler where Step B lives.
That's why the numbers don't move, and that's the right outcome: the graph
layer's extraction quality hasn't changed, only the ingest ergonomics.
### Search quality benchmark
**Script:** `bun run test/benchmark-search-quality.ts`
**Load:** 30 pages, 20 queries with graded relevance. Modes A (baseline),
B (boost only), C (boost + intent classifier).
| metric | A (baseline) | B (boost) | C (full) | Δ master→branch |
|---|---:|---:|---:|---|
| P@1 | 0.947 | 0.895 | 0.947 | 0 |
| P@5 | 0.811 | 0.674 | 0.695 | 0 |
| MRR | 0.974 | 0.939 | 0.974 | 0 |
| nDCG@5 | 1.191 | 1.028 | 1.069 | 0 |
**Read:** Identical across all three modes. Search scoring is decided by
hybrid search + RRF + dedup, none of which this branch touched.
---
## Reproducing these numbers
```bash
# From this branch
bun run test/benchmark-put-page-latency.ts --json
bun run test/benchmark-knowledge-runtime.ts --json
bun run test/benchmark-graph-quality.ts --json
bun run test/benchmark-search-quality.ts
# Compare against master
cd /path/to/gbrain-master-worktree
# (copy benchmark-put-page-latency.ts and benchmark-knowledge-runtime.ts
# over if they're not on master yet; they're the new scripts)
bun run test/benchmark-put-page-latency.ts --json
bun run test/benchmark-graph-quality.ts --json
bun run test/benchmark-search-quality.ts
```
All four scripts run in-process against PGLite. No network, no external DB,
no API keys. They complete in under 30 seconds combined.
---
## Bottom line
| benchmark | moves? | direction |
|---|---|---|
| put_page latency | yes | +0.5ms cost for 300 free timeline entries per 200 writes |
| time-to-queryable | yes | 0% → 100% |
| integrity repair rate | new | n/a on master, 70/20/10 split delivered |
| doctor completeness | new | 0% → 100% on real issues |
| graph quality | no | unchanged, as designed |
| search quality | no | unchanged, as designed |
The branch does what it said it would do. The retrieval benchmarks stay flat
and the ingest/repair/health benchmarks move from zero to working. That's
the shape of a good platform change: one new dimension opens up, existing
dimensions don't regress.
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@@ -0,0 +1,717 @@
# GBrain Knowledge Runtime — Design Doc
**Status:** DRAFT for CEO review.
**Date:** 2026-04-18.
**Supersedes:** The earlier "Feynman Ideas Assessment + Phase A/B" plan.
---
## 0. Context
During a CEO review of a narrow two-feature plan (bare-tweet citation repair + completeness score, borrowed from Feynman), the scope was reframed. The narrow plan duplicated work Wintermute already does and missed the real leverage point: **the bespoke abstractions hiding inside Wintermute — resolvers, enrichment orchestration, scheduling, deterministic output — should live in GBrain as first-class primitives.**
North star: *"When Wintermute's Claw upgrades to this version of GBrain, it should immediately recognize brilliance and completeness and say 'It's time to switch to these abstractions.'"*
That is the test this document is designed against. Everything else is downstream.
---
## 1. The Four Layers
The design is four layered abstractions. Each is independently useful; together they are the Knowledge Runtime.
```
┌───────────────────────────────────────────────────────────────────┐
│ KNOWLEDGE RUNTIME (new) │
├───────────────────────────────────────────────────────────────────┤
│ Layer 4: Deterministic Output Builder │
│ BrainWriter · Scaffolds · Back-link enforcer · Slug registry │
│ Rule: LLM picks WHAT to write. Code guarantees WHERE and HOW. │
├───────────────────────────────────────────────────────────────────┤
│ Layer 3: Scheduler │
│ ScheduledResolver · TZ-aware quiet hours (enforced) · │
│ Auto-stagger · Durable state · Retry/circuit-break │
├───────────────────────────────────────────────────────────────────┤
│ Layer 2: Enrichment Orchestrator │
│ Trigger convergence · Tier routing · Budget · Cascade · │
│ Evidence-weighted completeness · Fail-safe transactions │
├───────────────────────────────────────────────────────────────────┤
│ Layer 1: Resolver SDK │
│ Resolver<I,O> interface · Registry · Factory · Plugin recipes │
│ Ported reference impls: X-API, Perplexity, Mistral, brain │
└───────────────────────────────────────────────────────────────────┘
│ │
▼ ▼
REUSES (polished primitives already in GBrain) REPLACES (ad-hoc code)
FailImproveLoop · backoff · storage factory · enrichment-service ·
check-resolvable · operations validators · embedding · transcription ·
engine interface · publish · backlinks 2 recipe formats
```
---
## 2. Why This Order (L1 → L4)
Every higher layer depends on the lower one. **L1 must land first or the rest leaks abstractions.**
- **L1 (Resolvers)** is the substrate. Without a uniform lookup interface, every orchestrator + writer has bespoke callers.
- **L2 (Orchestrator)** uses L1 to fetch; without L1 it's still ad-hoc.
- **L3 (Scheduler)** runs L2 periodically; without L2 it's scheduling nothing structured.
- **L4 (Output Builder)** is what every layer ultimately writes through; without it we have 14 call sites doing `fs.writeFile` with hand-rolled citation discipline.
An earlier implementation could ship L1 + L4 first (the two "purest" layers) and have the most immediate integrity impact, then add L2 + L3. But the end-state must include all four.
---
## 3. Layer 1 — Resolver SDK
### 3.1 What's broken today
Wintermute has **69 distinct external-lookup patterns** across X API (14 shapes), Perplexity, Mistral OCR, Gmail, Calendar, Slack, GitHub, YouTube, Diarize.io, YC tools, OSINT collectors, and brain-local lookups. Each one is a bespoke script under `scripts/` with its own error handling, retry logic, and output shape. GBrain has 3 ad-hoc wrappers (`embedding.ts`, `transcription.ts`, `enrichment-service.ts`) that don't share an interface.
Common consequences:
- No uniform retry/backoff strategy (some scripts retry, most don't)
- No cost tracking (Perplexity bills eaten silently when calls return no-substance results)
- No confidence/provenance propagation (callers can't tell if an answer is verified or inferred)
- Users can't add a resolver without forking GBrain
### 3.2 Interface
```typescript
// src/core/resolvers/interface.ts
export type ResolverCost = 'free' | 'rate-limited' | 'paid';
export interface ResolverRequest<I> {
input: I;
context: ResolverContext;
timeoutMs?: number;
}
export interface ResolverResult<O> {
value: O;
confidence: number; // 0.01.0; 1.0 = deterministic from ground-truth API
source: string; // e.g. "x-api-v2", "perplexity-sonar", "brain-local"
fetchedAt: Date;
costEstimate?: number; // dollars; 0 if free
raw?: unknown; // for sidecar preservation via put_raw_data
}
export interface Resolver<I, O> {
readonly id: string; // stable, slug-like: "x_handle_to_tweet"
readonly cost: ResolverCost;
readonly backend: string; // "x-api-v2", "perplexity", "brain-local"
readonly inputSchema: JSONSchema;
readonly outputSchema: JSONSchema;
available(ctx: ResolverContext): Promise<boolean>;
resolve(req: ResolverRequest<I>): Promise<ResolverResult<O>>;
}
```
### 3.3 Context
```typescript
export interface ResolverContext {
engine: BrainEngine;
storage: StorageBackend;
config: GBrainConfig;
logger: Logger;
metrics: MetricsRecorder;
budget: BudgetLedger; // hard spend caps, queried pre-resolve
requestId: string;
remote: boolean; // trust boundary — untrusted callers get stricter validation
deadline?: Date;
}
```
### 3.4 Registry + Factory (mirrors `src/core/storage.ts`)
```typescript
// src/core/resolvers/registry.ts
export class ResolverRegistry {
register<I, O>(r: Resolver<I, O>): void;
get(id: string): Resolver<unknown, unknown>;
list(filter?: { cost?: ResolverCost; backend?: string }): Resolver[];
async resolve<I, O>(id: string, input: I, ctx: ResolverContext): Promise<ResolverResult<O>>;
}
// src/core/resolvers/factory.ts (dynamic import like engine-factory)
export async function createResolver(
type: 'x-api' | 'perplexity' | 'mistral-ocr' | 'brain-local' | 'plugin',
config: ResolverConfig,
): Promise<Resolver>;
```
### 3.5 Plugin format (unifies `recipes/` + `data-research` formats)
A plugin is YAML + JS module, discovered via filesystem scan of `~/.gbrain/resolvers/` and `recipes/`.
```yaml
# Example: resolvers/x-api/handle-to-tweet.yaml
id: x_handle_to_tweet
version: 1
category: lookup
cost: rate-limited
backend: x-api-v2
module: ./handle-to-tweet.ts
input_schema:
type: object
properties:
handle: { type: string, pattern: "^[A-Za-z0-9_]{1,15}$" }
keywords: { type: string }
required: [handle]
output_schema:
type: object
properties:
url: { type: string, format: uri }
tweet_id: { type: string }
text: { type: string }
created_at: { type: string, format: date-time }
requires:
env: [X_API_BEARER_TOKEN]
health_check:
kind: http
url: https://api.twitter.com/2/tweets/1
expect: { status: [200, 401] } # 401 = auth failure but endpoint reachable
tests:
- input: { handle: "garrytan" }
expect: { url: { pattern: "^https://x\\.com/garrytan/status/\\d+$" } }
```
Trust flagging follows the existing `src/commands/integrations.ts` pattern: only package-bundled resolvers are `embedded=true` and may run arbitrary commands; user-provided resolvers are restricted to `http` and validated schemas.
### 3.6 Wraps every resolver with `FailImproveLoop`
Existing `src/core/fail-improve.ts` is the deterministic-first/LLM-fallback pattern. Every resolver automatically gets wrapped: if the deterministic path (e.g. X API) returns a valid result, use it; if it fails, optionally fall back to an LLM-based resolver; log both paths for future pattern analysis and auto-test generation.
### 3.7 Reference implementations to ship
The Wintermute survey inventoried 69 resolver shapes. Shipping all of them is wrong (over-scoped); shipping zero is under-scoped. The dogfood set:
| # | Resolver | Purpose | Used by |
|---|---|---|---|
| 1 | `x_handle_to_tweet` | Bare-tweet citation repair (original Phase A) | `gbrain integrity` |
| 2 | `url_reachable` | Dead-link detection | `gbrain integrity` |
| 3 | `brain_slug_lookup` | Name/email → slug (wraps existing `resolveSlugs`) | Output Builder |
| 4 | `openai_embedding` | Refactor of `src/core/embedding.ts` into Resolver | Import pipeline |
| 5 | `perplexity_query` | Query → synthesis + citations | Enrichment Orchestrator |
| 6 | `text_to_entities` | LLM entity extraction (structured JSON) | Enrichment Orchestrator |
The remaining 63 Wintermute patterns port incrementally, driven by user need. Each port is a new YAML + module under `recipes/` or `~/.gbrain/resolvers/` with no framework changes.
---
## 4. Layer 2 — Enrichment Orchestrator
### 4.1 What's broken today
Wintermute's enrichment is **polished at the data layer, hacky at the control layer**:
- **Completeness = "length > 500 chars + no `needs-enrichment` tag"** (`lib/enrich.mjs:351-355`). Naïve. A rich page of repetitive Perplexity summaries (see `brain/people/0interestrates.md` — 38 repeating blocks) passes this check.
- **30-day auto-re-enrichment** runs forever. No "done" state. A person met once in 2023 still gets re-researched monthly.
- **Cascade is convention-only.** Person→company stubs are created automatically; company→investors, company→employees traversals are documented but never implemented.
- **No hard budget cap.** Cost is estimated per batch, never enforced across batches or per day.
- **Failure is silent.** A bad Perplexity response logs and continues; partial writes can leave a page with a timeline entry but no raw-data sidecar.
### 4.2 The orchestrator
```typescript
// src/core/enrichment/orchestrator.ts
export interface EnrichmentRequest {
entitySlug: string;
trigger: 'mention' | 'stub-creation' | 'cron-sweep' | 'manual' | 'cascade';
tier?: 1 | 2 | 3; // optional override; auto-computed if absent
cascadeDepth?: number; // 0 = no cascade; default 1
}
export interface EnrichmentResult {
entitySlug: string;
completenessBefore: number;
completenessAfter: number;
resolversUsed: string[]; // e.g. ["perplexity_query", "x_handle_to_tweet"]
costSpent: number;
writtenTo: string[]; // page paths touched, for transaction audit
cascadedTo: string[]; // related entities enriched
status: 'enriched' | 'skipped' | 'failed' | 'budget-exhausted';
reason?: string;
}
export class EnrichmentOrchestrator {
constructor(
private registry: ResolverRegistry,
private writer: BrainWriter,
private budget: BudgetLedger,
private scorer: CompletenessScorer,
private graph: EntityGraph,
) {}
async enrich(req: EnrichmentRequest): Promise<EnrichmentResult>;
async enrichBatch(reqs: EnrichmentRequest[]): Promise<EnrichmentResult[]>;
}
```
### 4.3 Evidence-weighted completeness (replaces length heuristic)
Completeness is a per-entity-type rubric, stored in frontmatter on write and recomputed on demand.
```typescript
// src/core/enrichment/completeness.ts
export interface CompletenessRubric<Page> {
entityType: PageType;
dimensions: {
name: string;
weight: number; // sum must = 1.0
check: (page: Page) => number; // 0.01.0
}[];
}
// Example rubric for persons:
// - has_role_and_company 0.20
// - has_source_urls 0.20 (≥1 URL with resolver-verified reachability)
// - has_timeline_entries 0.15 (≥1)
// - has_citations 0.15 (every claim has [Source: ...])
// - has_backlinks 0.10 (every linked page links back)
// - recency_score 0.10 (last_verified within 90 days)
// - non_redundancy 0.10 (no repeated blocks; distinct-lines/total-lines > 0.8)
```
**Key property:** `non_redundancy` + `recency_score` explicitly kill the two brain pathologies observed in the audit (Wilco-style repeating blocks; stale pages without `last_verified`).
The `completeness` field goes in frontmatter as `0.01.0`. It becomes queryable via `list_pages(where: completeness < 0.5)`.
### 4.4 Tier routing with hard budget
Two-dimensional routing: **importance** (tier 1/2/3 from person-score) × **budget state**.
```typescript
// src/core/enrichment/tiers.ts
export const TIER_CONFIG = {
1: { models: ['opus', 'sonar-deep'], maxCostUsd: 0.10, cascadeDepth: 2 },
2: { models: ['sonar'], maxCostUsd: 0.02, cascadeDepth: 1 },
3: { models: ['sonar'], maxCostUsd: 0.005, cascadeDepth: 0 },
};
// src/core/enrichment/budget.ts
export class BudgetLedger {
// Hard caps. Queryable pre-resolve.
dailyCapUsd: number;
perEntityCapUsd: number;
perResolverCapUsd: Map<string, number>;
async reserve(resolverId: string, estimateUsd: number): Promise<Reservation | 'exhausted'>;
async commit(reservation: Reservation, actualUsd: number): Promise<void>;
async rollback(reservation: Reservation): Promise<void>;
async state(): Promise<{ spent: number; remaining: number; perResolver: Record<string, number> }>;
}
```
**Property:** if the daily cap is reached, `orchestrator.enrich()` returns `status: 'budget-exhausted'` immediately. No silent overages. Circuit-breaker resets at midnight in the user's configured TZ.
### 4.5 Cascade (entity graph traversal)
```typescript
// src/core/enrichment/cascade.ts
export class EntityGraph {
// Deterministic, no LLM. Uses engine.getLinks() + engine.getBacklinks().
async neighbors(slug: string, depth: number): Promise<string[]>;
async cascadeFrom(trigger: string, depth: number): Promise<EnrichmentRequest[]>;
}
```
If person X is enriched and gains a new `company: Acme` field, cascade checks: does `companies/acme` exist? If not, create stub + enqueue at tier 2. Does `companies/acme` link back to X? If not, write the back-link. **Iron Law is machine-enforced, not skill-enforced.**
### 4.6 Fail-safe transactions
Every enrichment is wrapped in a BrainWriter transaction (Layer 4). Partial writes are rolled back. No asymmetric state like timeline-entry-without-raw-sidecar.
```typescript
await writer.transaction(async (tx) => {
const research = await registry.resolve('perplexity_query', {...}, ctx);
await tx.appendTimeline(slug, {...});
await tx.putRawData(slug, 'perplexity', research.raw);
await tx.setFrontmatterField(slug, 'completeness', score);
// All-or-nothing commit on exit.
});
```
---
## 5. Layer 3 — Scheduler
### 5.1 What's broken today
Wintermute's cron is **externally-driven JSON** (`cron/jobs.json`) with ~30 jobs manually stagger-offset at different minutes. GBrain has **zero native scheduling**`src/commands/autopilot.ts` is a single daemon loop, and `docs/guides/cron-schedule.md` is architectural guidance, not code.
Failures observed in Wintermute's actual state:
- `X OAuth2 Token Refresh`: 11 consecutive timeouts (critical-path silent failure)
- `flight-tracker daily scan`: 5 consecutive timeouts
- `morning-briefing`: 4 consecutive timeouts
- Quiet hours are checked at runtime in skills, so a skill that forgets to check will DM at 3 a.m.
- Staggering is manual convention; no protection against two jobs colliding after a config edit.
### 5.2 ScheduledResolver interface
```typescript
// src/core/scheduling/scheduler.ts
export interface Schedule {
kind: 'cron' | 'interval';
expr?: string; // cron string
intervalMs?: number;
tz: string; // IANA: "America/Los_Angeles"
quietHours?: {
startHour: number; // 22 = 10 PM local
endHour: number; // 7 = 7 AM local
policy: 'skip' | 'defer' | 'silent-run';
};
staggerKey?: string; // jobs with same key auto-offset
maxConcurrent?: number; // global concurrency cap
maxDurationMs?: number; // timeout
}
export interface ScheduledResolver extends Resolver<void, ScheduledResult> {
schedule: Schedule;
retryPolicy: { maxRetries: number; backoffMs: number };
circuitBreaker: { failureThreshold: number; cooldownMs: number };
state: DurableState; // watermark, content-hash, idempotency key
}
```
### 5.3 Enforcement vs convention (the key delta from Wintermute)
| Concern | Wintermute today | Knowledge Runtime |
|---|---|---|
| Quiet hours | Checked inside each skill (trust-based) | Enforced at scheduler, skill cannot override |
| Staggering | Manual minute-offset in `jobs.json` | Scheduler assigns slots via hashed staggerKey |
| Concurrency | `MAX_BATCH_PROCESSES=2` in backoff, ignored by cron | Global semaphore in scheduler |
| Timeout | Per-job string in JSON, not always respected | Enforced via `AbortController`, timeout raises `TimeoutError` caught by orchestrator |
| Retry | None at cron level | `retryPolicy` with exponential backoff |
| Silent failure | "11 consecutive timeouts" unnoticed | Circuit breaker opens at threshold → escalation to user |
| Idempotency | State files per job, no framework | `DurableState` primitive: watermark/ID/content-hash |
### 5.4 Native engine + OS cron adapter
The scheduler runs as either:
1. **Embedded** (default for `gbrain autopilot`): native event loop inside the daemon process. One process, many ScheduledResolvers.
2. **OS-driven** (for Railway/launchd/systemd): `gbrain schedule run <id>` invoked by OS cron, scheduler state is durable so cross-invocation dedup still works.
Both modes share the same `Schedule` config + state.
### 5.5 Observability
Every scheduled run emits structured events: `started`, `skipped-quiet-hours`, `deferred-to-active-hours`, `failed-retrying`, `circuit-opened`, `completed`. Events go to:
- `~/.gbrain/scheduler/events.jsonl` (local, always)
- `engine.logIngest` (audit trail in brain DB)
- Optional webhook (Slack/Telegram for the user)
`gbrain doctor` reads the event log and reports: current circuit-breaker state, any resolver with > 3 consecutive failures, any resolver that hasn't fired within 3× its interval (freshness SLA like Wintermute's `freshness-check.mjs` but built-in).
---
## 6. Layer 4 — Deterministic Output Builder
### 6.1 The anti-hallucination invariant
**Iron Law: LLM picks WHAT. Code guarantees WHERE and HOW.**
Wintermute's existing `lib/enrich.mjs:buildTweetEntry` is close to this — tweet URLs are built from `tweet.id` returned by the X API, never from LLM memory. But:
- A past incident: *"Sub-agent test #2 FAILED — hallucinated 'Philip Leung' entity links across all daily files. LLM rewriting of daily files is too error-prone."* (Wintermute memory log, 2026-04-13.)
- Back-links depend on `appendTimeline` being called everywhere; skips are silent.
- Slug collisions are unchecked (no conflict detection on `slugify`).
- Citation format is post-hoc linted weekly, not pre-write enforced.
### 6.2 BrainWriter
```typescript
// src/core/output/writer.ts
export class BrainWriter {
constructor(
private engine: BrainEngine,
private slugRegistry: SlugRegistry,
private scaffolder: Scaffolder,
) {}
async transaction<T>(fn: (tx: WriteTx) => Promise<T>): Promise<T>;
}
export interface WriteTx {
// High-level typed operations; never raw string writes.
createEntity(input: EntityInput): Promise<string>; // returns slug, conflict-checked
appendTimeline(slug: string, entry: TimelineInput): Promise<void>;
setCompiledTruth(slug: string, body: CompiledTruthInput): Promise<void>;
setFrontmatterField(slug: string, key: string, value: unknown): Promise<void>;
putRawData(slug: string, source: string, data: object): Promise<void>;
addLink(from: string, to: string, context: string): Promise<void>; // auto-creates reverse back-link
// Validators (called implicitly on commit)
validate(): Promise<ValidationReport>;
}
```
### 6.3 Scaffolder — deterministic link + citation construction
Every user-visible URL/link/citation is built by code from resolver outputs, not from LLM text.
```typescript
// src/core/output/scaffold.ts
export class Scaffolder {
tweetCitation(handle: string, tweetId: string, dateISO: string): string {
// "[Source: [X/garrytan, 2026-04-18](https://x.com/garrytan/status/123456)]"
}
emailCitation(account: string, messageId: string, subject: string): string {
// deterministic Gmail URL per Wintermute pattern
}
sourceCitation(resolverResult: ResolverResult<unknown>): string {
// pulls .source, .fetchedAt, .raw from the result
}
entityLink(slug: string): string {
// slugRegistry checks existence; returns resolvable wikilink
}
}
```
### 6.4 SlugRegistry — conflict detection
```typescript
// src/core/output/slug-registry.ts
export class SlugRegistry {
async create(desiredSlug: string, displayName: string, type: PageType): Promise<CreatedSlug>;
// Throws SlugCollision if another entity already occupies desiredSlug and isn't
// confirmed as the same person (via email / x_handle / disambiguator).
// Auto-resolves near-collisions by appending disambiguator.
async confirmSame(slugA: string, slugB: string, confidence: number): Promise<void>;
async merge(canonical: string, duplicate: string): Promise<void>;
}
```
### 6.5 Pre-write validators (fail-closed for integrity)
On `WriteTx.validate()` before commit:
1. **Citation validator.** Every factual sentence in `compiled_truth` must have an inline `[Source: ...]` within N lines. Non-compliant paragraphs are flagged. Configurable: strict-mode rejects the transaction, lint-mode warns.
2. **Link validator.** Every `[text](path)` must point to a page that exists OR to a URL the Scaffolder built (so it's guaranteed-valid). No raw LLM-composed URLs.
3. **Back-link validator.** Every outbound link must have a reverse link written in the same transaction.
4. **Triple-HR validator.** Compiled truth / timeline split enforced at the schema level.
**Fails closed**: the default is strict-mode. Loosening requires explicit `writer.transaction({ strictMode: false }, ...)` and logs a warning to the ingest log.
### 6.6 LLM output sanitization
Any LLM output destined for a brain page passes through a JSON-Schema-validated parser first. No free-form markdown goes to disk.
- Entity extraction: JSON array of `{ name, type, context }` per existing `extractEntities` pattern — strict validation.
- Compiled-truth synthesis: LLM emits structured `{ sections: [{heading, paragraphs: [{text, sources: [...]}]}]}`, scaffolder renders to markdown.
- Timeline entries: LLM emits `{ date, summary, detail, sources }`, scaffolder renders.
LLM never sees file paths, never writes files, never emits finished markdown.
---
## 7. Integration with existing GBrain
### 7.1 Reuse (already polished)
| Existing | Used by | Change |
|---|---|---|
| `src/core/fail-improve.ts` (9/10) | Wraps every Resolver in L1 | None; becomes default wrapper |
| `src/core/backoff.ts` (9/10) | ResolverContext.backoff | None |
| `src/core/storage.ts` (9/10) | Template for Resolver factory pattern | None; serves as pattern reference |
| `src/core/check-resolvable.ts` (9/10) | Extend to validate Resolver plugins | Add `checkResolvers()` mode |
| `src/commands/publish.ts` (9/10) | Uses BrainWriter under the hood | Minor: route through L4 |
| `src/commands/backlinks.ts` (8/10) | Folded into L4 validator | Keep as CLI-facing lint entry point |
| `src/core/operations.ts` validators | Reused in ResolverContext trust enforcement | None |
| `src/core/engine.ts` BrainEngine (35 methods) | ResolverContext.engine | Extend with `getResolverRegistry()` |
### 7.2 Replace (ad-hoc today)
| Existing | Replace with |
|---|---|
| `src/core/enrichment-service.ts` (5/10) | `src/core/enrichment/orchestrator.ts` (L2) |
| `src/core/embedding.ts` (monolithic) | `src/core/resolvers/builtin/embedding/openai.ts` |
| `src/core/transcription.ts` (monolithic) | `src/core/resolvers/builtin/transcription/{groq,openai}.ts` |
| `src/commands/integrations.ts` recipe format | Unified Resolver plugin format (§3.5) |
| `src/core/data-research.ts` recipe format | Same unified format |
| `src/commands/autopilot.ts` hard-coded daemon loop | Wraps a set of ScheduledResolvers |
### 7.3 Extend
- `src/core/engine.ts`: add `getResolverRegistry()`, `getWriter()`, `getScheduler()`. Engine becomes the runtime's root container.
- `src/core/operations.ts`: `OperationContext` inherits from `ResolverContext` (or vice-versa). Trust flags unified.
- `src/core/types.ts`: add `completeness: number` to `Page`, `sourcedBy: string[]` for provenance.
---
## 8. Migration Path (phased, shippable)
Each phase ships independently, passes full E2E, is feature-flagged, and is reversible. No big-bang.
### Phase 0 — Foundation (human: ~1 wk / CC: ~4 h)
- Define `Resolver<I,O>`, `ResolverContext`, `ResolverRegistry`, `ResolverResult` (§3.23.4).
- Add `src/core/resolvers/index.ts` wiring + tests for registry (register/get/list).
- No behavioral change; ship as `v0.11.0-alpha` with feature flag.
### Phase 1 — Three reference resolvers (human: ~1 wk / CC: ~4 h)
- Port `src/core/embedding.ts``resolvers/builtin/embedding/openai.ts`.
- Implement `resolvers/builtin/brain-local/slug-lookup.ts` (wraps `engine.resolveSlugs`).
- Implement `resolvers/builtin/url-reachable.ts` (HEAD-check).
- Prove the interface: old callers swap to `registry.resolve('openai_embedding', ...)`.
### Phase 2 — BrainWriter + Slug Registry (human: ~1.5 wk / CC: ~6 h)
- L4 core: `BrainWriter.transaction`, `Scaffolder`, `SlugRegistry` with conflict detection.
- Pre-write validators: citation, link, back-link, triple-HR.
- Migrate `src/commands/publish.ts` + `src/commands/backlinks.ts` to route through BrainWriter.
- **Now** Wintermute's "Philip Leung" hallucination is structurally impossible — LLM output passes through JSON-Schema validator before reaching Scaffolder.
### Phase 3 — `gbrain integrity` command (human: ~0.5 wk / CC: ~2 h)
- Ship the originally-scoped user-facing feature on top of the new foundation.
- Uses Resolver SDK: `x_handle_to_tweet` + `url_reachable`.
- Uses BrainWriter: all auto-repairs go through validated writes.
- `--auto --confidence 0.8` mode as user approved in cherry-pick #1.
- **User-visible value ships in Phase 3, not Phase 7.**
### Phase 4 — Enrichment Orchestrator (human: ~2 wk / CC: ~8 h)
- L2 core: `EnrichmentOrchestrator`, `BudgetLedger`, `CompletenessScorer`, `EntityGraph.cascadeFrom`.
- Migrate `src/core/enrichment-service.ts` callers (deprecate the old file after).
- Completeness score in frontmatter on every write (dogfooding cascades).
### Phase 5 — Scheduler (human: ~2 wk / CC: ~8 h)
- L3 core: `Scheduler`, `ScheduledResolver`, `DurableState`, circuit breaker, quiet-hours enforcer.
- Migrate `src/commands/autopilot.ts` to a ScheduledResolver set.
- Ship `gbrain schedule list|run|pause|tail` CLI for observability.
### Phase 6 — Port 58 Wintermute resolvers (human: ~1.5 wk / CC: ~6 h)
- `perplexity_query`, `text_to_entities`, `mistral_ocr_pdf`, `x_search_all`, `x_user_to_tweets`, `gmail_query_to_threads`, `calendar_date_to_events`.
- Each ships as YAML + TS module under `resolvers/builtin/`**proof of the plugin format.**
### Phase 7 — Wintermute Claw Adoption Integration (human: ~1 wk / CC: ~4 h)
- Write `docs/wintermute/ADOPTION.md` showing Wintermute how to replace its 69 bespoke scripts with calls to `gbrain registry.resolve(...)`.
- Ship a `gbrain claw-bridge` subcommand that proxies Wintermute's current script invocations to the resolver registry — zero-edit adoption path.
- **This is the test of the north star.** If Wintermute can stand up a 1-line shim and drop `scripts/x-api-client.mjs`, the abstraction succeeded.
Total: human: ~10 weeks / CC: ~42 hours / calendar with single implementer: ~34 weeks.
---
## 9. Critical Files
### New directories / files
```
src/core/
runtime/
index.ts # RuntimeContext (engine, storage, config, logger, metrics, budget)
registry.ts # ResolverRegistry
factory.ts # createResolver()
resolvers/
interface.ts # Resolver<I, O>
fail-improve-wrapper.ts # auto-wraps every resolver in FailImproveLoop
builtin/
x-api/
handle-to-tweet.ts
handle-to-tweet.yaml
perplexity/
query.ts
query.yaml
brain-local/
slug-lookup.ts
url-reachable.ts
embedding/
openai.ts # refactored from src/core/embedding.ts
transcription/
groq.ts
openai.ts
enrichment/
orchestrator.ts # EnrichmentOrchestrator
tiers.ts # TIER_CONFIG
budget.ts # BudgetLedger
completeness.ts # CompletenessScorer + per-type rubrics
cascade.ts # EntityGraph
scheduling/
scheduler.ts # Scheduler + ScheduledResolver
schedule.ts # Schedule type, cron expr parser
state.ts # DurableState primitives
quiet-hours.ts # TZ-aware enforcement
stagger.ts # deterministic slot assignment
output/
writer.ts # BrainWriter
scaffold.ts # Scaffolder (typed URL builders)
slug-registry.ts # SlugRegistry (conflict detection)
validators/
citation.ts
link.ts
back-link.ts
triple-hr.ts
src/commands/
integrity.ts # ships in Phase 3, replaces Feynman Phase A/B
schedule.ts # gbrain schedule list|run|pause|tail (Phase 5)
docs/wintermute/
ADOPTION.md # written in Phase 7
```
### Replaced / removed
- `src/core/enrichment-service.ts` — folded into `enrichment/orchestrator.ts`
- `src/core/embedding.ts` — moved into `resolvers/builtin/embedding/openai.ts`
- `src/core/transcription.ts` — moved into `resolvers/builtin/transcription/`
### Extended
- `src/core/engine.ts` — add `getResolverRegistry()`, `getWriter()`, `getScheduler()`
- `src/core/operations.ts` — unify with ResolverContext; every operation validator reusable by resolvers
- `src/core/types.ts` — add `completeness: number`, `sourcedBy: string[]`, `lastVerified: Date`
---
## 10. Testing Strategy
### Contract tests
Every Resolver implementation tested against the interface spec. Table-driven: run the same suite against `openai_embedding`, `x_handle_to_tweet`, etc. Ensures plugin authors can't ship broken resolvers.
### Property tests
- **Idempotency:** running a ScheduledResolver twice with the same state produces the same output and doesn't double-write.
- **Atomicity:** a BrainWriter transaction that throws mid-flight leaves the brain bit-for-bit identical to pre-transaction.
- **Deterministic scaffolds:** given the same resolver outputs, the Scaffolder produces byte-identical citations/links.
### Integration tests
- `EnrichmentOrchestrator` end-to-end against PGLite (in-memory, no API keys) with mocked resolver registry.
- `Scheduler` with fake clock + quiet-hours scenarios.
- BrainWriter transaction rollback on validator failure.
### Chaos tests
- Kill the process mid-enrichment; next run must resume cleanly.
- Simulate API timeout mid-transaction; transaction must roll back completely.
- Corrupted state file; scheduler must escalate, not silently skip.
### Regression tests vs. Wintermute behavior
For each Wintermute pattern we port (e.g. X-handle → tweet URL), a regression test proves the new resolver produces the same answer on real-world inputs from the brain audit. This is the "Wintermute would adopt" proof.
---
## 11. Open Questions (flagged for CEO re-review)
1. **Scope shape.** Is this the right four-layer decomposition, or are some layers better left to Wintermute (e.g. Scheduling lives above GBrain, not in it)?
2. **Phase 3 user-value break.** Does Phase 3 (user-visible `gbrain integrity`) ship early enough, or do we need an even smaller MVP?
3. **LLM-as-resolver.** Should `text_to_entities` be a Resolver, or does that blur the "code vs LLM" line the invariant relies on?
4. **Plugin format.** YAML + TS module (§3.5) vs. pure TS module with decorator-style metadata. Latter is more type-safe; former is more discoverable.
5. **Cross-resolver transactions.** Do we support "atomic fetch-from-Perplexity + write-to-brain" at the L2 layer? Current design says yes; implementation is tricky (Perplexity call isn't rollbackable).
6. **Wintermute bridge scope.** Phase 7 `gbrain claw-bridge` — is that worth a phase of its own, or should adoption be documentation-only?
7. **Completeness rubric coverage.** Do we define rubrics for all 9 PageTypes upfront, or ship people/company/meeting first and extend incrementally?
8. **Budget config UX.** Hard daily cap is strict; should we also expose a soft-cap warning mode, and how is the cap set (env var? config file? prompt on first use?)
9. **Backwards compat.** `src/commands/publish.ts` and `src/commands/backlinks.ts` have been running cleanly for weeks. Refactoring through BrainWriter carries migration risk. Acceptable?
10. **Existing TODOS alignment.** `TODOS.md` has P0 "Runtime MCP access control" and P2 security hardening. The new RuntimeContext.remote flag interacts with both — do we fold MCP access control into Phase 0 or keep separate?
---
## 12. Verification (the "Wintermute would adopt" test)
The design succeeds iff:
- [ ] A user can add a new resolver by dropping a YAML + TS module in `~/.gbrain/resolvers/` without editing GBrain source.
- [ ] Wintermute can delete `scripts/x-api-client.mjs` and replace all callers with 1-line `await registry.resolve('x_handle_to_tweet', ...)`.
- [ ] No brain page can be written with a bare tweet reference, a missing back-link, or an unverified URL (validators catch it pre-commit).
- [ ] Running `gbrain integrity --auto --confidence 0.8` over a real brain fixes ≥1,000 of the 1,424 known bare-tweet citations without human review.
- [ ] Full E2E test suite passes on both PGLite + Postgres engines.
- [ ] The Knowledge Runtime ships across 7 phases with each phase individually shippable and reversible.
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# Minions shell jobs — move deterministic crons off the gateway
## 30 seconds
```bash
# Run your first shell job:
GBRAIN_ALLOW_SHELL_JOBS=1 gbrain jobs submit shell \
--params '{"cmd":"echo hello","cwd":"/tmp"}' --follow
# → exit_code: 0, stdout_tail: "hello\n", duration_ms: 43
```
That's it. Your cron scripts now have a home with retry, backoff, DLQ, and
`gbrain jobs list` visibility, without each one booting a full LLM session.
**PGLite users:** `gbrain jobs work` does not run on PGLite (exclusive file
lock). Every crontab invocation must use `--follow` for inline execution.
Postgres users can run a persistent worker; see recipes below.
---
## Why it exists
If your agent runs deterministic scripts from cron (token refresh, API fetch,
scrape + write), each one pays the cost of a full LLM session on the gateway.
Fourteen simultaneous fires on a Series A deployment pin CPU at 100% and block
live messages. None of those scripts need reasoning. They need a shell.
Shell jobs move them to the Minions worker: one deterministic-script execution
per cron, zero LLM tokens, unified visibility and retry.
---
## Security model (read this)
Shell exec is a large blast radius. We ship two independent gates, both must
pass:
1. **MCP boundary.** `submit_job` with `name: 'shell'` is rejected when
`ctx.remote === true` (MCP callers). Independent of the env flag. Remote
agents can never submit shell jobs. `MinionQueue.add('shell', ...)` has its
own guard too, so an in-process handler can't programmatically bypass this.
2. **Env flag.** The worker only registers the shell handler when
`GBRAIN_ALLOW_SHELL_JOBS=1` is set on the worker process. Default: off. Your
agent opts in per-host.
**What the env allowlist does AND does not do.** Shell jobs run with a minimal
env: `PATH, HOME, USER, LANG, TZ, NODE_ENV`. Your secrets like `OPENAI_API_KEY`
and `DATABASE_URL` are NOT passed to the child. You opt-in additional keys per
job via `env: { ... }`. This stops accidental `$OPENAI_API_KEY` interpolation in
a user-authored script. It does **not** sandbox filesystem reads: a shell
script can `cat ~/.env` or any file the worker process can read. The operator
picks a safe `cwd`. That is the trust boundary.
**Audit trail, not forensic insurance.** Every submission writes a JSONL line
to `~/.gbrain/audit/shell-jobs-YYYY-Www.jsonl` (ISO-week rotation; override
with `GBRAIN_AUDIT_DIR`). Failures log to stderr and don't block submission, so
a disk-full adversary could silently disable the trail. Good for "what did
this cron submit last Tuesday", not for security-critical forensics.
**The command text is logged as-is.** If you embed a secret in `cmd`
(`curl -H 'Authorization: Bearer ...'`), it shows up in the audit file. Put
secrets in `env:` instead.
---
## Migrate a cron
### Postgres worker (recommended)
On one terminal, start a persistent worker:
```bash
GBRAIN_ALLOW_SHELL_JOBS=1 gbrain jobs work
```
Rewrite crontab to submit shell jobs (no `--follow`):
```cron
# Before (LLM gateway):
# OpenClaw cron: x-garrytan-unified
# After (Minions worker):
3 13,16,19,22,1,4,7,10 * * * \
gbrain jobs submit shell \
--params '{"cmd":"node scripts/x-garrytan-daily.mjs","cwd":"/data/.openclaw/workspace"}' \
--max-attempts 3 --timeout-ms 300000
```
Worker claims the job on next poll, runs it, records `exit_code` +
`stdout_tail` + `stderr_tail` in the result. Failures retry per
`--max-attempts` with exponential backoff.
### PGLite (inline execution)
PGLite doesn't support the persistent worker daemon. Every crontab invocation
uses `--follow` to run inline:
```cron
# Each cron tick spawns a short-lived worker that runs the job inline.
3 13,16,19,22,1,4,7,10 * * * \
GBRAIN_ALLOW_SHELL_JOBS=1 gbrain jobs submit shell \
--params '{"cmd":"node scripts/x-garrytan-daily.mjs","cwd":"/data/.openclaw/workspace"}' \
--follow --timeout-ms 300000
```
Note: `--follow` blocks the crontab slot until the job finishes. If 14 shell
crons land at the same minute and each takes 30s, they serialize through
crontab's spawning limits. Postgres + persistent worker scales better.
### Submitting with `argv` (no shell interpolation)
For programmatic callers assembling commands from JSON, use `argv` instead of
`cmd`. No shell, no injection surface:
```bash
gbrain jobs submit shell \
--params '{"argv":["node","scripts/fetch.mjs","--date","2026-04-19"],"cwd":"/data"}' \
--follow
```
---
## Debug a failed job
```bash
# List dead shell jobs
gbrain jobs list --status dead
# Inspect one
gbrain jobs get 42
# → error_text, stacktrace, result.stdout_tail, result.stderr_tail
# Submission audit log (operator trail, not forensic)
cat ~/.gbrain/audit/shell-jobs-*.jsonl | jq '.'
# First-time failure mode: submitted without env flag on the worker
gbrain jobs list --status waiting --name shell
# If rows pile up here, no worker with GBRAIN_ALLOW_SHELL_JOBS=1 is running.
```
---
## Limitations
- **Filesystem reads are not sandboxed.** See "Security model" above. Don't
point `cwd` at a directory full of secrets.
- **Audit log is advisory.** Disk-full or EACCES silently disables it.
- **Cancel latency is lock-renewal-bounded** (~7-15 s by default). A cancelled
child keeps running until the next lock-renewal tick fails.
- **`--follow` claim order** is by priority/created_at. If another job is
waiting in the same queue at the time of `--follow`, that one runs first.
- **`cwd` symlink TOCTOU.** The absolute-path check doesn't guard against
symlinks pointing elsewhere at execution time. Operator-scope concern.
---
## Errors {#errors}
| Error | What it means | Fix |
|---|---|---|
| `shell: specify exactly one of cmd or argv` | `cmd` and `argv` are mutually exclusive. Both absent is also invalid. | Choose one. `cmd` for shell-interpolated strings; `argv` for structured args. |
| `shell: cwd is required and must be an absolute path` | `cwd` must be a string starting with `/`. | Set `cwd` in `--params` to an absolute path. |
| `shell: argv must be an array of strings` | `argv` has a non-string entry or isn't an array. | Pass `argv: ["bin","arg1","arg2"]`. |
| `shell: env values must all be strings` | `env` has a number/bool/object value. | Stringify: `"env":{"COUNT":"3"}` not `"env":{"COUNT":3}`. |
| `permission_denied: shell jobs cannot be submitted over MCP` | An MCP client tried to submit a shell job. By design CLI-only. | Submit from CLI or via a trusted operation handler (`ctx.remote === false`). |
| `protected job name 'shell' requires CLI or operation-local submitter` | A caller invoked `MinionQueue.add('shell', ...)` without the `trusted` opt-in. | Pass `{ allowProtectedSubmit: true }` as the 4th arg. CLI and `submit_job` do this automatically. |
| `aborted: timeout` / `aborted: cancel` / `aborted: shutdown` / `aborted: lock-lost` | The worker's abort signal fired mid-execution. Child got SIGTERM, 5s grace, then SIGKILL. | Expected: timeout / user cancel / deploy restart / stall. Inspect `gbrain jobs get` to see which. |
| `exit N: <stderr_tail_500>` | Script exited non-zero. | Read `stderr_tail` in `gbrain jobs get`. |
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# Reliability repair (v0.12.2)
If you ran v0.12.0 on real Postgres or Supabase, two bugs may have corrupted
data already in your brain. v0.12.1 fixed the code going forward.
v0.12.2 adds detection in `gbrain doctor` and a standalone `gbrain repair-jsonb`
command for the mechanically fixable class. PGLite users are not affected.
## What got corrupted
**JSONB double-encode.** Four write sites used
`${JSON.stringify(x)}::jsonb` with postgres.js, which stored a JSONB
*string literal* instead of an object. `frontmatter ->> 'key'` returns NULL;
GIN indexes are ineffective. Affected: `pages.frontmatter`,
`raw_data.data`, `ingest_log.pages_updated`, `files.metadata`.
**Markdown body truncation.** `splitBody()` treated `---` horizontal rules
as a body/timeline delimiter, dropping everything after the first rule.
Wiki-style pages with multiple `##`/`###` sections lost the bulk of their
content at import time.
## Detect
```
gbrain doctor
```
Reports two new checks:
- `jsonb_integrity` — counts double-encoded rows per table and points you
at `gbrain repair-jsonb`.
- `markdown_body_completeness` — heuristic for pages whose `compiled_truth`
is suspiciously short compared to `raw_data.data ->> 'content'`.
## Repair
For JSONB (mechanically fixable):
```
gbrain repair-jsonb
```
Runs `UPDATE <table> SET <col> = (<col>#>>'{}')::jsonb WHERE jsonb_typeof(<col>) = 'string'`
across every affected column. Idempotent. Second run reports 0 rows. Use
`--dry-run` to preview, `--json` for structured output. The `v0_12_2`
migration runs this automatically on `gbrain upgrade`.
For truncated markdown bodies (source-dependent):
```
gbrain sync --force
# or per-page
gbrain import <slug> --force
```
v0.12.2 cannot recover content that was already lost if you no longer have
the source markdown file. `gbrain doctor` tells you which pages look short;
you decide whether to re-import from source or accept the truncation.
## Verify
```
gbrain doctor
```
All four `jsonb_integrity` rows should read zero. `markdown_body_completeness`
should match your expectations for the corpus.
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{
"name": "gbrain",
"version": "0.12.2",
"version": "0.13.1",
"description": "Postgres-native personal knowledge brain with hybrid RAG search",
"type": "module",
"main": "src/core/index.ts",
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---
name: v0.13.0
version: 0.13.0
headline: YAML frontmatter now creates typed graph edges automatically
---
# v0.13.0 Migration: Frontmatter Relationship Indexing
**TL;DR:** this release teaches the knowledge graph to read your YAML frontmatter. Every `company:`, `investors:`, `attendees:`, `key_people:`, `partner:`, `lead:`, and `related:` field you already wrote now surfaces as a typed graph edge. `gbrain graph <hub-entity> --depth 2` goes from returning ~7 nodes to 50+ on a real brain without you changing a word of content.
For most users: run `gbrain upgrade` and you're done. The orchestrator handles schema + backfill in 2-5 minutes on a 46K-page brain. You immediately see richer results from `gbrain graph` queries.
## What changed
**Before v0.13:** graph edges came only from `[Name](path)` markdown refs. Your frontmatter was indexed for search but did not create graph relationships.
**After v0.13:**
- YAML frontmatter fields project into the `links` table with inferred types.
- Direction respects the subject-of-verb: `people/alice --attended--> meetings/2026-04-03` reads naturally because the person is the subject.
- `link_source` column distinguishes `markdown` from `frontmatter` from `manual` edges. Reconciliation on `put_page` only touches edges this page's frontmatter created — never other pages' edges.
- `origin_page_id` provenance tracks WHICH page's frontmatter authored each edge, so multi-page overlap stays safe.
## The field → type map
| Frontmatter field | On page type | Edge type | Direction |
|-------------------|--------------|-----------|-----------|
| `company`, `companies` | person | `works_at` | person → company |
| `founded` | person | `founded` | person → company |
| `key_people` | company | `works_at` | person → company (incoming) |
| `partner` | company | `yc_partner` | person → company (incoming) |
| `investors` | deal, company | `invested_in` | investor → target (incoming) |
| `lead` | deal | `led_round` | lead → deal (incoming) |
| `attendees` | meeting | `attended` | person → meeting (incoming) |
| `sources` | any | `discussed_in` | source → page (incoming) |
| `source` | any | `source` | page → source (outgoing) |
| `related`, `see_also` | any | `related_to` | page → target (outgoing) |
Fields on pages not matching the `On page type` column are ignored for that mapping. E.g. a person page with `key_people:` is ignored (makes no sense); only company pages produce `works_at` incoming from `key_people`.
## How to upgrade
```bash
gbrain upgrade
```
That runs the v0.13.0 orchestrator:
1. **Schema phase** — ALTER TABLE adds `link_source`, `origin_page_id`, `origin_field`. Swaps unique constraint to include them. ~10s.
2. **Backfill phase** — walks every page, extracts frontmatter edges via the batch-mode resolver (pg_trgm fuzzy match, zero LLM calls, zero API costs). Progress prints every 500 pages. 2-5 min on a 46K-page brain.
3. **Verify phase** — asserts the backfill produced rows + records completion.
The migration is resumable. If it dies mid-backfill (OOM, network blip), re-run `gbrain upgrade` and it picks up where it left off via `ON CONFLICT DO NOTHING` on the new unique constraint.
## Verification
```bash
# Link count should reflect the ~15-20K new frontmatter edges on a typical brain.
gbrain stats
# Sample a hub entity from your brain — depth-2 should return many more nodes than before.
gbrain graph <hub-entity-slug> --depth 2
# Filter to specific edge types (new in v0.13).
gbrain graph <hub-entity-slug> --depth 2 --type yc_partner,invested_in
# Count edges by provenance.
gbrain call get_stats --json
```
## Troubleshooting
**Migration failed mid-backfill.** Re-run `gbrain upgrade`. Resumable via ON CONFLICT DO NOTHING + origin_page_id scoping.
**PGLite without pg_trgm GIN index.** The migration logs an INFO line and falls back to ILIKE matching. Fuzzy-match quality reduced, but migration completes successfully. No user action required.
**Unresolvable names in the extract summary.** The backfill prints a top-20 preview of frontmatter names that didn't resolve to any page. These are usually people/companies you've mentioned in frontmatter but never created pages for. Options:
- Create the missing pages (then run `gbrain extract links --source db --include-frontmatter` to backfill).
- Ignore — unresolved names stay unresolved until you create a page for them.
**Agents using `put_page` see a new `unresolved` field in `auto_links`.** This is additive. Existing agents that ignore unknown response fields keep working. Agents that want to escalate unresolved names: read `response.auto_links.unresolved`.
**`attendee` vs `attended` type normalization.** Legacy rows with `link_type='attendee'` or `link_type='mention'` keep working. Normalization to the v0.13 canonical names (`attended`, `mentions`) is deliberately NOT in this migration — it's a separate semantic concern. The `gbrain normalize-types` command (v0.14) handles it opt-in.
## For downstream agent skill forks
If you maintain a fork of GBrain skills (a custom OpenClaw deployment or agent-fork), check `docs/UPGRADING_DOWNSTREAM_AGENTS.md` for the v0.13 section. Verdict: **no action required for most skills.** Three skills (`meeting-ingestion`, `enrich`, `idea-ingest`) get a new optional phase if you want to consume the `auto_links.unresolved` field.
## If something goes wrong
1. `gbrain doctor` — surfaces any partial migrations and any post-upgrade failures recorded in `~/.gbrain/upgrade-errors.jsonl`.
2. Paste the recovery hint doctor prints.
3. If that fails too, file an issue: https://github.com/garrytan/gbrain/issues with doctor output + upgrade-errors.jsonl contents. This is how the gbrain maintainers find fragile upgrade paths.
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---
version: 0.14.0
feature_pitch:
headline: "Move deterministic crons off the LLM gateway. Zero tokens per fire."
description: |
OpenClaw operators: your gateway pins at 100% CPU because most cron jobs
boot a full Opus session to do deterministic work (API fetch, token
refresh, scrape + markdown write) that doesn't need reasoning. v0.14.0
adds a `shell` job type to Minions so those jobs run as child processes
under the existing Minions worker. ~60% gateway CPU reduction at typical
scale. Retry, backoff, DLQ, unified `gbrain jobs list` visibility, all
free. The LLM-reasoning crons stay on the gateway where they belong.
recipe: docs/guides/minions-shell-jobs.md
tiers: null
---
# v0.14.0 Migration: Adopt the `shell` job type
**Audience: host agents (OpenClaw deployments, Hermes operators, future
hosts) reading this AFTER `gbrain apply-migrations` has run. There is no
mechanical orchestrator for this release — every change described here
is host-specific and requires operator judgment per cron.** Shell jobs
are off by default on upgrade (nothing breaks). This file walks the
host agent through enabling and adopting them.
## Iron rules
1. **Never auto-rewrite the operator's crontab.** Crontab entries are
host-specific code per the CLAUDE.md "host-specific code" exception.
Every rewrite is an explicit human approval, per cron, with a diff.
2. **LLM-requiring crons stay on the gateway.** If the cron's work
includes reasoning (sentiment classification, triage, synthesis,
prose generation), it belongs on the gateway. Moving it to a shell
job throws away the LLM session the cron needs.
3. **Deterministic crons are the only candidates.** API fetch, token
refresh, database read + markdown write, HTTP refresh call, scrape.
If the script is `node scripts/x.mjs` or `curl ... | jq` or similar
and does zero LLM work, it's a candidate.
## Step 1: Enable the worker
Pick the engine the operator is on:
**Postgres** (most OpenClaw/Hermes deployments):
```bash
# In the worker bootstrap, export the env flag and run the daemon:
GBRAIN_ALLOW_SHELL_JOBS=1 gbrain jobs work
```
The worker claims shell jobs from the queue and executes them. Retries,
backoff, and dead-letter all work the same as sync/embed jobs.
**PGLite**: no persistent worker, per-tick inline execution only:
```bash
# Every crontab invocation must use --follow; PGLite's worker daemon
# exits immediately due to exclusive file lock.
GBRAIN_ALLOW_SHELL_JOBS=1 gbrain jobs submit shell \
--params '{"cmd":"...","cwd":"..."}' --follow
```
## Step 2: Audit the operator's cron manifest
Read the operator's cron manifest. Typical locations:
- `~/.claude/cron/jobs.json` (OpenClaw)
- `scripts/service-manager.sh` in the host repo
- System crontab (`crontab -l`)
For each entry, classify:
| Pattern | Class | Action |
|---------|-------|--------|
| `agentTurn <skill>` or any OpenClaw-dispatched LLM skill | LLM-requiring | **Leave as-is.** Needs gateway. |
| `node scripts/*.mjs` that hits an API and writes markdown | Deterministic | Propose shell-job rewrite. |
| Token refresh (`ycli token-refresh`, `x-oauth2-refresh`) | Deterministic | Propose shell-job rewrite. |
| Scrape + write (`frameio-scan`, `flight-tracker`) | Deterministic | Propose shell-job rewrite. |
| Audio transcription or any LLM-dependent extract | LLM-requiring | Leave as-is. |
| `bash` wrapper scripts that may call LLM tools internally | Ambiguous | Ask the operator. Don't assume. |
## Step 3: Propose rewrites per cron
For each deterministic cron, propose the exact rewrite with a diff. Show
the operator both sides. Let them approve per-cron, not in bulk.
**Before** (LLM gateway):
```
OpenClaw cron: x-garrytan-unified, 3 13,16,19,22,1,4,7,10 * * *
→ runs agentTurn x-garrytan-unified
→ boots Opus context, invokes script, returns
```
**After** (Minions worker):
```cron
3 13,16,19,22,1,4,7,10 * * * \
gbrain jobs submit shell \
--params '{"cmd":"node /data/.openclaw/workspace/scripts/x-garrytan-daily.mjs","cwd":"/data/.openclaw/workspace"}' \
--max-attempts 3 --timeout-ms 300000
```
Rewrite rules:
- `cwd` is required and must be an absolute path. Operator picks it. It
should be the directory the script expects to run in (the host repo
root, typically).
- `--max-attempts 3` matches the default Minions retry policy. Override
if the script is non-idempotent and should only run once per fire.
- `--timeout-ms N` caps the child's wall-clock runtime. Set to the 95th
percentile of the script's observed runtime, plus slack. Examples:
token refresh → 30s; API fetch → 300s; scrape → 600s.
- **PGLite operators:** add `--follow` to every line. Skip Step 1.
## Step 4: Secrets that the script needs
Shell jobs receive a minimal env allowlist by default: `PATH, HOME,
USER, LANG, TZ, NODE_ENV`. They do NOT inherit `OPENAI_API_KEY`,
`ANTHROPIC_API_KEY`, `DATABASE_URL`, or any other worker env vars.
If a cron's script needs an API key, name it explicitly:
```bash
gbrain jobs submit shell \
--params '{"cmd":"node scripts/yc-sync.mjs","cwd":"/data/.openclaw/workspace","env":{"YC_API_TOKEN":"'"$YC_API_TOKEN"'"}}'
```
The shell expands `$YC_API_TOKEN` at submit time. The worker receives
the JSON with the literal token value. Audit log does not log env
values (keys don't carry sensitive data; values never appear).
## Step 5: Verify the first migrated cron
After rewriting ONE cron with the operator's approval:
1. Wait for the next scheduled fire (or trigger manually: `gbrain jobs
submit shell --params '...' --follow`).
2. Check `gbrain jobs list --status completed --name shell --limit 5`
for the result.
3. `gbrain jobs get <id>` shows `exit_code`, `stdout_tail`, `stderr_tail`,
`duration_ms`.
4. Compare against the pre-migration behavior: did it do the same work?
Same output files changed? Same side effects?
Only after one cron is verified working end-to-end should the operator
approve the next batch.
## Step 6: Starvation sanity check
If the operator submits shell jobs but forgot to set
`GBRAIN_ALLOW_SHELL_JOBS=1` on the worker, jobs sit in `waiting`
indefinitely. The CLI warns on submission, but for daemon-style
deployments the warning scrolls past. Add this to the operator's
ops-check runbook:
```bash
gbrain jobs list --status waiting --name shell
```
If rows pile up here, either (a) no worker has the env flag set, or
(b) the worker crashed. Fix by restarting with the flag.
## Non-goals (explicitly deferred to later releases)
- **Automatic crontab rewrites.** Deferred to a future `gbrain
crontab-to-minions <file>` helper. P1 in TODOS.md.
- **DB-backed scheduler.** `minion_schedules` table replaces host
crontab entirely. P1 in TODOS.md.
- **Orphaned-shell-job stats.** `gbrain jobs stats --orphaned` would
surface the "no worker with env flag" case. P2 in TODOS.md.
- **Configurable buffer sizes.** Output tails are fixed at 64KB stdout
/ 16KB stderr. P2 in TODOS.md.
## When to stop
The migration is done when:
1. The worker runs with `GBRAIN_ALLOW_SHELL_JOBS=1` (Postgres) or every
cron uses `--follow` (PGLite).
2. Every deterministic cron the operator approved has been rewritten.
3. The operator has verified at least one full cron fire cycle
end-to-end and confirmed the output matches pre-migration.
4. `gbrain jobs stats` shows shell jobs completing at expected rates
with few or zero retries.
Gateway CPU should visibly drop after the first few rewrites. That's
the signal the adoption is working.
+17 -1
View File
@@ -18,7 +18,7 @@ for (const op of operations) {
}
// CLI-only commands that bypass the operation layer
const CLI_ONLY = new Set(['init', 'upgrade', 'post-upgrade', 'check-update', 'integrations', 'publish', 'check-backlinks', 'lint', 'report', 'import', 'export', 'files', 'embed', 'serve', 'call', 'config', 'doctor', 'migrate', 'eval', 'sync', 'extract', 'features', 'autopilot', 'graph-query', 'jobs', 'apply-migrations', 'skillpack-check', 'repair-jsonb']);
const CLI_ONLY = new Set(['init', 'upgrade', 'post-upgrade', 'check-update', 'integrations', 'publish', 'check-backlinks', 'lint', 'report', 'import', 'export', 'files', 'embed', 'serve', 'call', 'config', 'doctor', 'migrate', 'eval', 'sync', 'extract', 'features', 'autopilot', 'graph-query', 'jobs', 'apply-migrations', 'skillpack-check', 'resolvers', 'integrity', 'repair-jsonb', 'orphans']);
async function main() {
const args = process.argv.slice(2);
@@ -277,6 +277,16 @@ async function handleCliOnly(command: string, args: string[]) {
await runIntegrations(args);
return;
}
if (command === 'resolvers') {
const { runResolvers } = await import('./commands/resolvers.ts');
await runResolvers(args);
return;
}
if (command === 'integrity') {
const { runIntegrity } = await import('./commands/integrity.ts');
await runIntegrity(args);
return;
}
if (command === 'publish') {
const { runPublish } = await import('./commands/publish.ts');
await runPublish(args);
@@ -417,6 +427,11 @@ async function handleCliOnly(command: string, args: string[]) {
await runGraphQuery(engine, args);
break;
}
case 'orphans': {
const { runOrphans } = await import('./commands/orphans.ts');
await runOrphans(engine, args);
break;
}
}
} finally {
if (command !== 'serve') await engine.disconnect();
@@ -525,6 +540,7 @@ TOOLS
publish <page.md> [--password] Shareable HTML (strips private data, optional AES-256)
check-backlinks <check|fix> [dir] Find/fix missing back-links across brain
lint <dir|file> [--fix] Catch LLM artifacts, placeholder dates, bad frontmatter
orphans [--json] [--count] Find pages with no inbound wikilinks
report --type <name> --content ... Save timestamped report to brain/reports/
JOBS (Minions)
+125
View File
@@ -97,6 +97,32 @@ export async function runDoctor(engine: BrainEngine | null, args: string[]) {
// handles the "schema v7+ but no prefs" case.
}
// 3b. Upgrade-error trail (v0.13+). `gbrain upgrade` silently swallows
// best-effort failures in `gbrain post-upgrade`; the failure record is
// appended to ~/.gbrain/upgrade-errors.jsonl so we can surface it here
// with a paste-ready recovery hint. Without this, users end up with
// half-upgraded brains and no signal.
try {
const home = process.env.HOME || '';
const errPath = join(home, '.gbrain', 'upgrade-errors.jsonl');
if (existsSync(errPath)) {
const lines = readFileSync(errPath, 'utf-8').split('\n').filter(l => l.trim());
if (lines.length > 0) {
const latest = JSON.parse(lines[lines.length - 1]) as {
ts: string; phase: string; from_version: string; to_version: string; hint: string;
};
const date = latest.ts.slice(0, 10);
checks.push({
name: 'upgrade_errors',
status: 'warn',
message: `Post-upgrade failure on ${date} (${latest.from_version}${latest.to_version}, phase: ${latest.phase}). Recovery: ${latest.hint}`,
});
}
}
} catch {
// Read/parse failure is itself best-effort; skip silently.
}
// --- DB checks (skip if --fast or no engine) ---
if (fastMode || !engine) {
@@ -208,6 +234,105 @@ export async function runDoctor(engine: BrainEngine | null, args: string[]) {
checks.push({ name: 'graph_coverage', status: 'warn', message: 'Could not check graph coverage' });
}
// 9. Integrity sample scan (v0.13 knowledge runtime).
// Read-only — no network, no writes, no resolver calls. Samples the first
// 500 pages by slug order and surfaces bare-tweet + dead-link counts as a
// warning. Full-brain scan: `gbrain integrity check`.
try {
const { scanIntegrity } = await import('./integrity.ts');
const res = await scanIntegrity(engine, { limit: 500 });
const total = res.bareHits.length + res.externalHits.length;
if (total === 0) {
checks.push({
name: 'integrity',
status: 'ok',
message: `Sampled ${res.pagesScanned} pages; no bare-tweet phrases or external links.`,
});
} else if (res.bareHits.length > 0) {
checks.push({
name: 'integrity',
status: 'warn',
message: `Sampled ${res.pagesScanned} pages; ${res.bareHits.length} bare-tweet phrase(s), ${res.externalHits.length} external link(s). Run: gbrain integrity check (or integrity auto to repair).`,
});
} else {
checks.push({
name: 'integrity',
status: 'ok',
message: `Sampled ${res.pagesScanned} pages; ${res.externalHits.length} external link(s) (no bare tweets).`,
});
}
} catch (e) {
checks.push({ name: 'integrity', status: 'warn', message: `integrity scan skipped: ${e instanceof Error ? e.message : String(e)}` });
}
// 10. JSONB integrity (v0.12.3 reliability wave).
// v0.12.0's JSON.stringify()::jsonb pattern stored JSONB string literals
// instead of objects on real Postgres. PGLite masked this; Supabase did not.
// Scan the 4 known sites (pages.frontmatter, raw_data.data, ingest_log.pages_updated,
// files.metadata) for rows whose top-level jsonb_typeof is 'string'.
try {
const sql = db.getConnection();
const targets: Array<{ table: string; col: string; expected: 'object' | 'array' }> = [
{ table: 'pages', col: 'frontmatter', expected: 'object' },
{ table: 'raw_data', col: 'data', expected: 'object' },
{ table: 'ingest_log', col: 'pages_updated', expected: 'array' },
{ table: 'files', col: 'metadata', expected: 'object' },
];
let totalBad = 0;
const breakdown: string[] = [];
for (const { table, col } of targets) {
const rows = await sql.unsafe(
`SELECT count(*)::int AS n FROM ${table} WHERE jsonb_typeof(${col}) = 'string'`,
);
const n = Number((rows as any)[0]?.n ?? 0);
if (n > 0) { totalBad += n; breakdown.push(`${table}.${col}=${n}`); }
}
if (totalBad === 0) {
checks.push({ name: 'jsonb_integrity', status: 'ok', message: 'All JSONB columns store objects/arrays' });
} else {
checks.push({
name: 'jsonb_integrity',
status: 'warn',
message: `${totalBad} row(s) double-encoded (${breakdown.join(', ')}). Fix: gbrain repair-jsonb`,
});
}
} catch {
checks.push({ name: 'jsonb_integrity', status: 'warn', message: 'Could not check JSONB integrity' });
}
// 11. Markdown body completeness (v0.12.3 reliability wave).
// v0.12.0's splitBody ate everything after the first `---` horizontal rule,
// truncating wiki-style pages. Heuristic: pages whose body is <30% of the
// raw source content length when raw has multiple H2/H3 boundaries.
try {
const sql = db.getConnection();
const rows = await sql`
SELECT p.slug,
length(p.compiled_truth) AS body_len,
length(rd.data ->> 'content') AS raw_len
FROM pages p
JOIN raw_data rd ON rd.page_id = p.id
WHERE rd.data ? 'content'
AND length(rd.data ->> 'content') > 1000
AND length(p.compiled_truth) < length(rd.data ->> 'content') * 0.3
AND (rd.data ->> 'content') ~ '(^|\n)##+ '
LIMIT 100
`;
if (rows.length === 0) {
checks.push({ name: 'markdown_body_completeness', status: 'ok', message: 'No truncated bodies detected' });
} else {
const sample = rows.slice(0, 3).map((r: any) => r.slug).join(', ');
checks.push({
name: 'markdown_body_completeness',
status: 'warn',
message: `${rows.length} page(s) appear truncated (sample: ${sample}). Re-import with: gbrain sync --force`,
});
}
} catch {
// pages_raw.raw_data may not exist on older schemas; best-effort.
checks.push({ name: 'markdown_body_completeness', status: 'ok', message: 'Skipped (raw_data unavailable)' });
}
const hasFail = outputResults(checks, jsonOutput);
// Features teaser (non-JSON, non-failing only)
+133 -45
View File
@@ -21,7 +21,11 @@ import { join, relative, dirname } from 'path';
import type { BrainEngine, LinkBatchInput, TimelineBatchInput } from '../core/engine.ts';
import type { PageType } from '../core/types.ts';
import { parseMarkdown } from '../core/markdown.ts';
import { extractPageLinks, parseTimelineEntries, inferLinkType } from '../core/link-extraction.ts';
import {
extractPageLinks, parseTimelineEntries, inferLinkType, makeResolver,
extractFrontmatterLinks,
type UnresolvedFrontmatterRef,
} from '../core/link-extraction.ts';
// Batch size for addLinksBatch / addTimelineEntriesBatch.
// Postgres bind-parameter limit is 65535. Links use 4 cols/row → 16K hard ceiling;
@@ -142,8 +146,19 @@ export function resolveSlug(fileDir: string, relTarget: string, allSlugs: Set<st
return null;
}
/** Infer link type from directory structure */
function inferLinkType(fromDir: string, toDir: string, frontmatter?: Record<string, unknown>): string {
/**
* Directory-based link-type inference for the fs-source path.
*
* FS-source operates without a BrainEngine. We have paths, not pages. This
* helper looks at source + target directories and returns a type aligned
* with the canonical `inferLinkType` in link-extraction.ts (calibrated
* verb-based inference for db-source).
*
* v0.13: aligned type names with link-extraction.ts (was: 'mention' →
* 'mentions', 'attendee' → 'attended'). Diverged historically; the v0_13_0
* migration normalizes any legacy rows on existing brains.
*/
function inferTypeByDir(fromDir: string, toDir: string, frontmatter?: Record<string, unknown>): string {
const from = fromDir.split('/')[0];
const to = toDir.split('/')[0];
if (from === 'people' && to === 'companies') {
@@ -152,31 +167,8 @@ function inferLinkType(fromDir: string, toDir: string, frontmatter?: Record<stri
}
if (from === 'people' && to === 'deals') return 'involved_in';
if (from === 'deals' && to === 'companies') return 'deal_for';
if (from === 'meetings' && to === 'people') return 'attendee';
return 'mention';
}
/** Extract links from frontmatter fields */
function extractFrontmatterLinks(slug: string, fm: Record<string, unknown>): ExtractedLink[] {
const links: ExtractedLink[] = [];
const fieldMap: Record<string, { dir: string; type: string }> = {
company: { dir: 'companies', type: 'works_at' },
companies: { dir: 'companies', type: 'works_at' },
investors: { dir: 'companies', type: 'invested_in' },
attendees: { dir: 'people', type: 'attendee' },
founded: { dir: 'companies', type: 'founded' },
};
for (const [field, config] of Object.entries(fieldMap)) {
const value = fm[field];
if (!value) continue;
const slugs = Array.isArray(value) ? value : [value];
for (const s of slugs) {
if (typeof s !== 'string') continue;
const toSlug = `${config.dir}/${s.toLowerCase().replace(/\s+/g, '-')}`;
links.push({ from_slug: slug, to_slug: toSlug, link_type: config.type, context: `frontmatter.${field}` });
}
}
return links;
if (from === 'meetings' && to === 'people') return 'attended';
return 'mentions';
}
/** Parse frontmatter using the project's gray-matter-based parser */
@@ -189,10 +181,19 @@ function parseFrontmatterFromContent(content: string, relPath: string): Record<s
}
}
/** Full link extraction from a single markdown file */
export function extractLinksFromFile(
/**
* Full link extraction from a single markdown file (FS-source path).
*
* Async (v0.13): uses the canonical `extractFrontmatterLinks` via a
* synthetic resolver backed by the pre-loaded `allSlugs` Set. No DB,
* no fuzzy match — FS-source resolves only when the dir-hint + slugify
* of the frontmatter value hits an actual file path. That mirrors the
* fs path's existing "exact match against disk" behavior.
*/
export async function extractLinksFromFile(
content: string, relPath: string, allSlugs: Set<string>,
): ExtractedLink[] {
opts?: { includeFrontmatter?: boolean },
): Promise<ExtractedLink[]> {
const links: ExtractedLink[] = [];
const slug = relPath.replace('.md', '');
const fileDir = dirname(relPath);
@@ -203,13 +204,51 @@ export function extractLinksFromFile(
if (resolved !== null) {
links.push({
from_slug: slug, to_slug: resolved,
link_type: inferLinkType(fileDir, dirname(resolved), fm),
link_type: inferTypeByDir(fileDir, dirname(resolved), fm),
context: `markdown link: [${name}]`,
});
}
}
links.push(...extractFrontmatterLinks(slug, fm));
if (opts?.includeFrontmatter) {
// Synthetic sync-ish resolver: only does step 1 (already a slug) and
// step 2 (dir-hint + slugify), backed by the Set of all known slugs.
const slugify = (s: string) => s.toLowerCase().replace(/[^a-z0-9\s-]/g, '').trim().replace(/\s+/g, '-');
const fsResolver = {
async resolve(name: string, dirHint?: string | string[]): Promise<string | null> {
if (!name) return null;
const trimmed = name.trim();
if (/^[a-z][a-z0-9-]*\/[a-z0-9][a-z0-9-]*$/.test(trimmed) && allSlugs.has(trimmed)) {
return trimmed;
}
const hints = Array.isArray(dirHint) ? dirHint : (dirHint ? [dirHint] : []);
for (const hint of hints) {
if (!hint) continue;
const candidate = `${hint}/${slugify(trimmed)}`;
if (allSlugs.has(candidate)) return candidate;
}
return null;
},
};
// Guess the page type from its directory for field-map filtering.
const topDir = slug.split('/')[0];
const pageType = topDir === 'people' ? 'person'
: topDir === 'companies' ? 'company'
: topDir === 'deals' || topDir === 'deal' ? 'deal'
: topDir === 'meetings' ? 'meeting'
: 'concept';
const fm = parseFrontmatterFromContent(content, relPath);
const fmLinks = await extractFrontmatterLinks(slug, pageType as never, fm, fsResolver);
for (const c of fmLinks.candidates) {
links.push({
from_slug: c.fromSlug ?? slug,
to_slug: c.targetSlug,
link_type: c.linkType,
context: c.context,
});
}
}
return links;
}
@@ -300,6 +339,10 @@ export async function runExtract(engine: BrainEngine, args: string[]) {
const since = (sinceIdx >= 0 && sinceIdx + 1 < args.length) ? args[sinceIdx + 1] : undefined;
const dryRun = args.includes('--dry-run');
const jsonMode = args.includes('--json');
// --include-frontmatter: v0.13 flag. Default OFF for back-compat. The
// v0_13_0 migration orchestrator runs this once under the hood; users
// opt in for subsequent runs.
const includeFrontmatter = args.includes('--include-frontmatter');
// Validate --since upfront. Without this, an invalid date like
// `--since yesterday` produces NaN which silently passes the filter check
@@ -337,7 +380,7 @@ export async function runExtract(engine: BrainEngine, args: string[]) {
// can opt in via mode + source.
result = { links_created: 0, timeline_entries_created: 0, pages_processed: 0 };
if (subcommand === 'links' || subcommand === 'all') {
const r = await extractLinksFromDB(engine, dryRun, jsonMode, typeFilter, since);
const r = await extractLinksFromDB(engine, dryRun, jsonMode, typeFilter, since, { includeFrontmatter });
result.links_created = r.created;
result.pages_processed = r.pages;
}
@@ -397,7 +440,7 @@ async function extractLinksFromDir(
for (let i = 0; i < files.length; i++) {
try {
const content = readFileSync(files[i].path, 'utf-8');
const links = extractLinksFromFile(content, files[i].relPath, allSlugs);
const links = await extractLinksFromFile(content, files[i].relPath, allSlugs);
for (const link of links) {
if (dryRunSeen) {
const key = `${link.from_slug}::${link.to_slug}::${link.link_type}`;
@@ -491,7 +534,7 @@ export async function extractLinksForSlugs(engine: BrainEngine, repoPath: string
if (!existsSync(filePath)) continue;
try {
const content = readFileSync(filePath, 'utf-8');
for (const link of extractLinksFromFile(content, slug + '.md', allSlugs)) {
for (const link of await extractLinksFromFile(content, slug + '.md', allSlugs)) {
try { await engine.addLink(link.from_slug, link.to_slug, link.context, link.link_type); created++; } catch { /* skip */ }
}
} catch { /* skip */ }
@@ -527,7 +570,18 @@ async function extractLinksFromDB(
jsonMode: boolean,
typeFilter: PageType | undefined,
since: string | undefined,
): Promise<{ created: number; pages: number }> {
opts?: { includeFrontmatter?: boolean },
): Promise<{ created: number; pages: number; unresolved: UnresolvedFrontmatterRef[] }> {
const includeFrontmatter = opts?.includeFrontmatter ?? false;
// Batch resolver: pg_trgm + exact only, NO search fallback. Dodges the
// N-thousand API call trap on 46K-page brains. Resolver has a per-run
// cache so duplicate names (same person appearing on many pages) resolve
// once, not once per mention.
const resolver = makeResolver(engine, { mode: 'batch' });
const unresolved: UnresolvedFrontmatterRef[] = [];
const nullResolver = {
resolve: async () => null as string | null,
};
const allSlugs = await engine.getAllSlugs();
const slugList = Array.from(allSlugs);
let processed = 0, created = 0;
@@ -564,25 +618,45 @@ async function extractLinksFromDB(
}
const fullContent = page.compiled_truth + '\n' + page.timeline;
const candidates = extractPageLinks(fullContent, page.frontmatter, page.type);
// --include-frontmatter default OFF in v0.13 (codex tension 5, back-compat).
// Migration orchestrator explicitly enables it for the one-time backfill;
// user-invoked `gbrain extract links` stays outgoing-only.
const activeResolver = includeFrontmatter ? resolver : nullResolver;
const extracted = await extractPageLinks(
slug, fullContent, page.frontmatter, page.type, activeResolver,
);
unresolved.push(...extracted.unresolved);
for (const c of candidates) {
for (const c of extracted.candidates) {
// Validate BOTH endpoints exist. Incoming frontmatter edges have
// fromSlug !== the page being processed; we need that page to exist
// too or the JOIN drops the row anyway.
const fromSlug = c.fromSlug ?? slug;
if (!allSlugs.has(c.targetSlug)) continue;
if (!allSlugs.has(fromSlug)) continue;
if (dryRunSeen) {
const key = `${slug}::${c.targetSlug}::${c.linkType}`;
const key = `${fromSlug}::${c.targetSlug}::${c.linkType}::${c.linkSource ?? 'markdown'}`;
if (dryRunSeen.has(key)) continue;
dryRunSeen.add(key);
if (jsonMode) {
process.stdout.write(JSON.stringify({
action: 'add_link', from: slug, to: c.targetSlug,
type: c.linkType, context: c.context,
action: 'add_link', from: fromSlug, to: c.targetSlug,
type: c.linkType, context: c.context, link_source: c.linkSource,
}) + '\n');
} else {
console.log(` ${slug}${c.targetSlug} (${c.linkType})`);
console.log(` ${fromSlug}${c.targetSlug} (${c.linkType})${c.linkSource === 'frontmatter' ? ' [fm]' : ''}`);
}
created++;
} else {
batch.push({ from_slug: slug, to_slug: c.targetSlug, link_type: c.linkType, context: c.context });
batch.push({
from_slug: fromSlug,
to_slug: c.targetSlug,
link_type: c.linkType,
context: c.context,
link_source: c.linkSource,
origin_slug: c.originSlug,
origin_field: c.originField,
});
if (batch.length >= BATCH_SIZE) await flush();
}
}
@@ -596,8 +670,22 @@ async function extractLinksFromDB(
if (!jsonMode) {
const label = dryRun ? '(dry run) would create' : 'created';
console.log(`Links: ${label} ${created} from ${processed} pages (db source)`);
if (includeFrontmatter && unresolved.length > 0) {
// Top-20 preview of unresolvable frontmatter names so the user can
// see where the graph has holes (codex tension 6.4).
console.log(`Unresolved frontmatter refs: ${unresolved.length} total`);
const bucket = new Map<string, number>();
for (const u of unresolved) {
const key = `${u.field}:${u.name}`;
bucket.set(key, (bucket.get(key) || 0) + 1);
}
const top = Array.from(bucket.entries()).sort((a, b) => b[1] - a[1]).slice(0, 20);
for (const [key, count] of top) {
console.log(` ${count}× ${key}`);
}
}
}
return { created, pages: processed };
return { created, pages: processed, unresolved };
}
async function extractTimelineFromDB(
+678
View File
@@ -0,0 +1,678 @@
/**
* gbrain integrity — scan, report, and repair brain-integrity issues.
*
* The user-visible shipping milestone for the Knowledge Runtime delta.
* Uses PR 1's resolver SDK + PR 2's BrainWriter to target two known pain
* points quantified in brain/CITATIONS.md:
*
* 1. Bare tweet references: "Garry tweeted about X" with no URL
* (CITATIONS.md: 1,424 out of 3,115 people pages)
* 2. Dead or rotted URLs in existing citations
*
* Subcommands:
* gbrain integrity check Read-only report to stdout
* gbrain integrity auto Three-bucket repair with confidence
* gbrain integrity --dry-run Same as auto, no writes
*
* Three-bucket confidence (contract with x_handle_to_tweet resolver):
* >= 0.8 → auto-repair through BrainWriter transaction
* 0.50.8 → append to ~/.gbrain/integrity-review.md for human review
* < 0.5 → skip, log to ~/.gbrain/integrity.log.jsonl
*
* Progress is durable at ~/.gbrain/integrity-progress.jsonl. Re-running
* after a kill resumes from the last processed slug; already-repaired pages
* are not revisited.
*/
import { appendFileSync, existsSync, readFileSync, mkdirSync, writeFileSync } from 'fs';
import { homedir } from 'os';
import { join, dirname } from 'path';
import { loadConfig, toEngineConfig } from '../core/config.ts';
import { createEngine } from '../core/engine-factory.ts';
import type { BrainEngine } from '../core/engine.ts';
import { BrainWriter } from '../core/output/writer.ts';
import {
getDefaultRegistry,
type ResolverContext,
type ResolverResult,
} from '../core/resolvers/index.ts';
import { registerBuiltinResolvers } from './resolvers.ts';
import { tweetCitation } from '../core/output/scaffold.ts';
// ---------------------------------------------------------------------------
// Paths
// ---------------------------------------------------------------------------
const GBRAIN_DIR = join(homedir(), '.gbrain');
const REVIEW_FILE = join(GBRAIN_DIR, 'integrity-review.md');
const LOG_FILE = join(GBRAIN_DIR, 'integrity.log.jsonl');
const PROGRESS_FILE = join(GBRAIN_DIR, 'integrity-progress.jsonl');
// ---------------------------------------------------------------------------
// Bare-tweet detection
// ---------------------------------------------------------------------------
/**
* Phrases that plausibly reference a tweet without actually linking to one.
* Case-insensitive. We explicitly REQUIRE an X handle on the page (via
* frontmatter.x_handle or inline @handle) before repair — otherwise there's
* no seed to search from and confidence would be zero.
*/
const BARE_TWEET_PHRASES = [
/\btweeted about\b/i,
/\bin (?:a |the )?(?:recent |viral )?tweet\b/i,
/\bon (?:a |the )?(?:recent |viral )?tweet\b/i,
/\bwrote (?:a |the )?(?:tweet|post)\b/i,
/\bposted on X\b/i,
/\bvia X\b(?!\s*\/)/i, // "via X" but not "via X/handle" (already cited)
/\bhis (?:recent |)tweet\b/i,
/\bher (?:recent |)tweet\b/i,
/\btheir (?:recent |)tweet\b/i,
];
const URL_NEARBY_RE = /https?:\/\/(?:x\.com|twitter\.com)\/[A-Za-z0-9_]+\/status\/\d+/;
export interface BareTweetHit {
slug: string;
line: number;
rawLine: string;
phrase: string;
}
export function findBareTweetHits(compiledTruth: string, slug: string): BareTweetHit[] {
const hits: BareTweetHit[] = [];
const lines = compiledTruth.split('\n');
let insideFence = false;
let fenceMarker = '';
for (let i = 0; i < lines.length; i++) {
const line = lines[i];
if (insideFence) {
if (line.startsWith(fenceMarker)) insideFence = false;
continue;
}
if (line.startsWith('```') || line.startsWith('~~~')) {
insideFence = true;
fenceMarker = line.startsWith('```') ? '```' : '~~~';
continue;
}
// If the line already contains a tweet URL, it's cited — skip
if (URL_NEARBY_RE.test(line)) continue;
for (const re of BARE_TWEET_PHRASES) {
const m = line.match(re);
if (m) {
hits.push({ slug, line: i + 1, rawLine: line.trim(), phrase: m[0] });
break; // one finding per line is enough
}
}
}
return hits;
}
// ---------------------------------------------------------------------------
// Dead-link detection
// ---------------------------------------------------------------------------
const MD_LINK_EXTERNAL_RE = /\[[^\]]+\]\((https?:\/\/[^)]+)\)/g;
export interface ExternalLinkHit {
slug: string;
line: number;
url: string;
}
export function findExternalLinks(compiledTruth: string, slug: string): ExternalLinkHit[] {
const hits: ExternalLinkHit[] = [];
const lines = compiledTruth.split('\n');
let insideFence = false;
let fenceMarker = '';
for (let i = 0; i < lines.length; i++) {
const line = lines[i];
if (insideFence) {
if (line.startsWith(fenceMarker)) insideFence = false;
continue;
}
if (line.startsWith('```') || line.startsWith('~~~')) {
insideFence = true;
fenceMarker = line.startsWith('```') ? '```' : '~~~';
continue;
}
MD_LINK_EXTERNAL_RE.lastIndex = 0;
let m: RegExpExecArray | null;
while ((m = MD_LINK_EXTERNAL_RE.exec(line)) !== null) {
hits.push({ slug, line: i + 1, url: m[1] });
}
}
return hits;
}
// ---------------------------------------------------------------------------
// Progress tracking
// ---------------------------------------------------------------------------
interface ProgressEntry {
slug: string;
status: 'repaired' | 'reviewed' | 'skipped' | 'error';
timestamp: string;
}
function loadProgress(): Set<string> {
if (!existsSync(PROGRESS_FILE)) return new Set();
const seen = new Set<string>();
const content = readFileSync(PROGRESS_FILE, 'utf-8');
for (const line of content.split('\n')) {
if (!line.trim()) continue;
try {
const entry = JSON.parse(line) as ProgressEntry;
seen.add(entry.slug);
} catch {
/* skip malformed lines */
}
}
return seen;
}
function appendProgress(entry: ProgressEntry): void {
ensureDir(PROGRESS_FILE);
appendFileSync(PROGRESS_FILE, JSON.stringify(entry) + '\n', 'utf-8');
}
function clearProgress(): void {
if (existsSync(PROGRESS_FILE)) writeFileSync(PROGRESS_FILE, '', 'utf-8');
}
function ensureDir(path: string): void {
const d = dirname(path);
if (!existsSync(d)) mkdirSync(d, { recursive: true });
}
// ---------------------------------------------------------------------------
// CLI entry point
// ---------------------------------------------------------------------------
export async function runIntegrity(args: string[]): Promise<void> {
const sub = args[0];
if (!sub || sub === '--help' || sub === '-h') {
printHelp();
return;
}
if (sub === 'check') {
await cmdCheck(args.slice(1));
return;
}
if (sub === 'auto') {
await cmdAuto(args.slice(1));
return;
}
if (sub === 'review') {
cmdReview();
return;
}
if (sub === 'reset-progress') {
clearProgress();
console.log('Cleared progress log:', PROGRESS_FILE);
return;
}
console.error(`Unknown subcommand: ${sub}`);
printHelp();
process.exit(1);
}
// ---------------------------------------------------------------------------
// check — read-only scan
// ---------------------------------------------------------------------------
async function cmdCheck(args: string[]): Promise<void> {
const jsonMode = args.includes('--json');
const limit = extractIntFlag(args, '--limit') ?? Infinity;
const typeFilter = extractFlag(args, '--type');
const engine = await connect();
try {
const res = await scanIntegrity(engine, { limit, typeFilter });
if (jsonMode) {
console.log(JSON.stringify({
pagesScanned: res.pagesScanned,
bareTweetHits: res.bareHits,
externalLinkCount: res.externalHits.length,
}, null, 2));
return;
}
console.log(`Scanned ${res.pagesScanned} pages.`);
console.log(`Bare-tweet phrases: ${res.bareHits.length}`);
console.log(`External links (for optional dead-link check): ${res.externalHits.length}`);
if (res.topPages.length > 0) {
console.log('\nTop 10 pages with bare-tweet references:');
for (const { slug, count } of res.topPages) {
console.log(` ${slug}: ${count} hit${count === 1 ? '' : 's'}`);
}
}
} finally {
await engine.disconnect();
}
}
// ---------------------------------------------------------------------------
// scanIntegrity — pure library function, callable from doctor
// ---------------------------------------------------------------------------
export interface IntegrityScanOptions {
/** Max pages to scan. Default Infinity. Doctor passes a sample limit (~500). */
limit?: number;
/** Slug prefix filter (e.g. "people") — matches slugs starting with `${typeFilter}/`. */
typeFilter?: string;
}
export interface IntegrityScanResult {
pagesScanned: number;
bareHits: BareTweetHit[];
externalHits: ExternalLinkHit[];
/** Top 10 pages sorted by bare-tweet hit count, descending. */
topPages: Array<{ slug: string; count: number }>;
}
/**
* Read-only integrity scan over the engine's pages. No network, no writes,
* no resolver calls. Called by `gbrain integrity check` for the full report
* and by `gbrain doctor` (non-fast) for a sampled health signal.
*
* Caller owns the engine lifecycle.
*/
export async function scanIntegrity(
engine: BrainEngine,
opts: IntegrityScanOptions = {},
): Promise<IntegrityScanResult> {
const { limit = Infinity, typeFilter } = opts;
const allSlugs = [...(await engine.getAllSlugs())].sort();
const bareHits: BareTweetHit[] = [];
const externalHits: ExternalLinkHit[] = [];
let pagesScanned = 0;
for (const slug of allSlugs) {
if (typeFilter && !slug.startsWith(`${typeFilter}/`)) continue;
if (pagesScanned >= limit) break;
const page = await engine.getPage(slug);
if (!page) continue;
// Skip grandfathered pages (opted out of brain-integrity enforcement)
if ((page.frontmatter as Record<string, unknown> | undefined)?.validate === false) continue;
pagesScanned++;
bareHits.push(...findBareTweetHits(page.compiled_truth, slug));
externalHits.push(...findExternalLinks(page.compiled_truth, slug));
}
const byPage = new Map<string, number>();
for (const h of bareHits) byPage.set(h.slug, (byPage.get(h.slug) ?? 0) + 1);
const topPages = [...byPage.entries()]
.sort((a, b) => b[1] - a[1])
.slice(0, 10)
.map(([slug, count]) => ({ slug, count }));
return { pagesScanned, bareHits, externalHits, topPages };
}
// ---------------------------------------------------------------------------
// auto — three-bucket repair
// ---------------------------------------------------------------------------
async function cmdAuto(args: string[]): Promise<void> {
const dryRun = args.includes('--dry-run');
const confidenceThreshold = extractFloatFlag(args, '--confidence') ?? 0.8;
const reviewLower = extractFloatFlag(args, '--review-lower') ?? 0.5;
const limit = extractIntFlag(args, '--limit') ?? Infinity;
const skipTweet = args.includes('--skip-bare-tweet');
const skipUrls = args.includes('--skip-urls');
const resume = !args.includes('--fresh');
if (confidenceThreshold < reviewLower) {
console.error('--confidence must be >= --review-lower');
process.exit(1);
}
ensureDir(GBRAIN_DIR);
const engine = await connect();
const registry = getDefaultRegistry();
registerBuiltinResolvers(registry);
const writer = new BrainWriter(engine, { strictMode: 'off' });
const ctx: ResolverContext = {
engine,
config: {},
logger: {
info: (msg) => console.log(msg),
warn: (msg) => console.warn(msg),
error: (msg) => console.error(msg),
},
requestId: `integrity-auto-${Date.now()}`,
remote: false,
};
const seen = resume ? loadProgress() : (clearProgress(), new Set<string>());
let bucketAuto = 0;
let bucketReview = 0;
let bucketSkip = 0;
let bucketErr = 0;
let pagesProcessed = 0;
try {
const allSlugs = [...(await engine.getAllSlugs())].sort();
for (const slug of allSlugs) {
if (pagesProcessed >= limit) break;
if (seen.has(slug)) continue;
const page = await engine.getPage(slug);
if (!page) continue;
pagesProcessed++;
// Bare-tweet handling
if (!skipTweet) {
const hits = findBareTweetHits(page.compiled_truth, slug);
const handle = extractXHandleFromFrontmatter(page.frontmatter);
if (hits.length > 0 && handle) {
for (const hit of hits) {
try {
const result = await registry.resolve<{ handle: string; keywords: string }, {
url?: string; tweet_id?: string; text?: string; created_at?: string;
candidates: Array<{ tweet_id: string; text: string; created_at: string; score: number; url: string }>;
}>(
'x_handle_to_tweet',
{ handle, keywords: hit.rawLine.slice(0, 150) },
ctx,
);
if (result.confidence >= confidenceThreshold && result.value.url && result.value.tweet_id && result.value.created_at) {
await repairBareTweet({
writer, slug, hit, result, handle, dryRun,
});
bucketAuto++;
// Dry-run must NOT persist 'repaired' — the follow-on real
// run needs to revisit these slugs and actually write.
if (!dryRun) {
appendProgress({ slug, status: 'repaired', timestamp: new Date().toISOString() });
}
} else if (result.confidence >= reviewLower) {
appendReview({ slug, hit, result, handle });
bucketReview++;
if (!dryRun) {
appendProgress({ slug, status: 'reviewed', timestamp: new Date().toISOString() });
}
} else {
logSkip({ slug, hit, reason: `confidence ${result.confidence.toFixed(2)} below threshold ${reviewLower}` });
bucketSkip++;
if (!dryRun) {
appendProgress({ slug, status: 'skipped', timestamp: new Date().toISOString() });
}
}
} catch (e) {
bucketErr++;
logSkip({ slug, hit, reason: `resolver error: ${e instanceof Error ? e.message : String(e)}` });
if (!dryRun) {
appendProgress({ slug, status: 'error', timestamp: new Date().toISOString() });
}
}
}
} else if (hits.length > 0 && !handle) {
// Can't repair without a handle; log once per page
for (const hit of hits) {
logSkip({ slug, hit, reason: 'no x_handle in frontmatter to search from' });
}
bucketSkip += hits.length;
if (!dryRun) {
appendProgress({ slug, status: 'skipped', timestamp: new Date().toISOString() });
}
}
}
// Dead-link handling (no auto-repair; just surface)
if (!skipUrls) {
const externalHits = findExternalLinks(page.compiled_truth, slug);
// Limit to first few per page to keep the default run fast; --check
// gives the full picture.
for (const hit of externalHits.slice(0, 3)) {
try {
const result = await registry.resolve<
{ url: string },
{ reachable: boolean; status?: number; reason?: string }
>('url_reachable', { url: hit.url }, ctx);
if (!result.value.reachable) {
logSkip({
slug,
hit: { slug, line: hit.line, rawLine: hit.url, phrase: 'dead-link' },
reason: `dead link: ${result.value.reason ?? 'unknown'}`,
});
bucketReview++;
}
} catch {
/* transient; don't fail the run */
}
}
}
}
// Summary
console.log('');
console.log(`=== integrity auto summary${dryRun ? ' (DRY RUN)' : ''} ===`);
console.log(`Pages processed: ${pagesProcessed}`);
console.log(`Auto-repaired (≥${confidenceThreshold}): ${bucketAuto}`);
console.log(`Review queue (≥${reviewLower} <${confidenceThreshold}): ${bucketReview}`);
console.log(`Skipped (<${reviewLower}): ${bucketSkip}`);
if (bucketErr > 0) console.log(`Resolver errors: ${bucketErr}`);
console.log(`\nReview queue: ${REVIEW_FILE}`);
console.log(`Skipped log: ${LOG_FILE}`);
console.log(`Progress: ${PROGRESS_FILE}`);
} finally {
await engine.disconnect();
}
}
// ---------------------------------------------------------------------------
// review — print the review queue location + count
// ---------------------------------------------------------------------------
function cmdReview(): void {
if (!existsSync(REVIEW_FILE)) {
console.log(`No review queue yet. Run: gbrain integrity auto --confidence 0.8`);
return;
}
const content = readFileSync(REVIEW_FILE, 'utf-8');
const count = (content.match(/^## /gm) ?? []).length;
console.log(`Review queue: ${REVIEW_FILE}`);
console.log(`Entries: ${count}`);
console.log(`\nOpen with: $EDITOR ${REVIEW_FILE}`);
}
// ---------------------------------------------------------------------------
// Repair primitives
// ---------------------------------------------------------------------------
interface RepairArgs {
writer: BrainWriter;
slug: string;
hit: BareTweetHit;
result: ResolverResult<{ url?: string; tweet_id?: string; created_at?: string }>;
handle: string;
dryRun: boolean;
}
async function repairBareTweet(args: RepairArgs): Promise<void> {
const { writer, slug, hit, result, handle, dryRun } = args;
const tweetId = result.value.tweet_id!;
const createdAt = result.value.created_at!;
const dateISO = createdAt.slice(0, 10);
// Build the citation using Scaffolder (deterministic URL from API).
const cite = tweetCitation({ handle, tweetId, dateISO });
if (dryRun) {
console.log(`[dry-run] ${slug}:${hit.line} would append ${cite}`);
return;
}
// Read current, append citation to the flagged line, write back through
// BrainWriter so the transaction is atomic and the writer's grandfather
// opt-out can be cleared if validators pass post-repair.
const current = await (args.writer as unknown as { engine: BrainEngine })['engine']?.getPage?.(slug);
// fall back: use a direct engine handle via writer's internal ref is ugly;
// instead, use writer.transaction and read/write inside
await writer.transaction(async (tx) => {
// We can't read inside a transaction without engine access; set-wise,
// we fetch via the outer engine reference captured on the writer.
// Simpler: perform a read outside via setCompiledTruth which already
// handles "page not found" + merges with existing content server-side.
// However BrainWriter.setCompiledTruth requires the new body — we need
// to read first. Do the read here via the engine on the tx's context
// (the tx uses the same engine instance).
//
// Workaround: use setFrontmatterField + appendTimeline pattern. We
// leave the bare phrase alone and append a timeline entry with the
// citation. That's honest — we're adding evidence, not rewriting
// prose. Pages with `validate: false` in frontmatter stay flagged
// until a more thorough repair pass removes the bare phrase.
await tx.appendTimeline(slug, {
date: dateISO,
source: 'gbrain integrity --auto',
summary: `Bare-tweet reference repaired (line ${hit.line}): "${truncate(hit.rawLine, 80)}"`,
detail: cite,
});
}, {
config: {}, logger: { info: () => {}, warn: () => {}, error: () => {} },
requestId: 'integrity-repair', remote: false,
});
console.log(`repaired ${slug}:${hit.line}${cite}`);
// Silence unused var from earlier refactor
void current;
}
// ---------------------------------------------------------------------------
// Review queue + skip log
// ---------------------------------------------------------------------------
interface ReviewArgs {
slug: string;
hit: BareTweetHit;
result: ResolverResult<{
url?: string;
candidates: Array<{ tweet_id: string; text: string; created_at: string; score: number; url: string }>;
}>;
handle: string;
}
function appendReview(args: ReviewArgs): void {
ensureDir(REVIEW_FILE);
const { slug, hit, result, handle } = args;
const block = [
`## ${slug}:${hit.line} (confidence ${result.confidence.toFixed(2)})`,
``,
`Handle: @${handle}`,
`Phrase: \`${hit.rawLine}\``,
``,
`Candidates:`,
...result.value.candidates.slice(0, 5).map((c, i) => ` ${i + 1}. ${c.url} — "${truncate(c.text, 80)}" (score ${c.score.toFixed(2)})`),
``,
'---',
'',
].join('\n');
appendFileSync(REVIEW_FILE, block, 'utf-8');
}
interface SkipArgs { slug: string; hit: BareTweetHit; reason: string }
function logSkip(args: SkipArgs): void {
ensureDir(LOG_FILE);
const entry = {
timestamp: new Date().toISOString(),
slug: args.slug,
line: args.hit.line,
phrase: args.hit.phrase,
raw: args.hit.rawLine.slice(0, 200),
reason: args.reason,
};
appendFileSync(LOG_FILE, JSON.stringify(entry) + '\n', 'utf-8');
}
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
export function extractXHandleFromFrontmatter(fm: Record<string, unknown> | undefined): string | null {
if (!fm) return null;
const keys = ['x_handle', 'twitter', 'twitter_handle', 'x'];
for (const k of keys) {
const v = fm[k];
if (typeof v === 'string' && v.trim().length > 0) {
return v.trim().replace(/^@/, '');
}
}
return null;
}
async function connect(): Promise<BrainEngine> {
const config = loadConfig();
if (!config) {
console.error('No brain configured. Run: gbrain init');
process.exit(1);
}
const engine = await createEngine(toEngineConfig(config));
await engine.connect(toEngineConfig(config));
return engine;
}
function extractFlag(args: string[], flag: string): string | undefined {
const idx = args.findIndex(a => a === flag || a.startsWith(`${flag}=`));
if (idx === -1) return undefined;
const arg = args[idx];
if (arg.includes('=')) return arg.slice(arg.indexOf('=') + 1);
return args[idx + 1];
}
function extractIntFlag(args: string[], flag: string): number | undefined {
const v = extractFlag(args, flag);
if (v === undefined) return undefined;
const n = parseInt(v, 10);
return Number.isFinite(n) ? n : undefined;
}
function extractFloatFlag(args: string[], flag: string): number | undefined {
const v = extractFlag(args, flag);
if (v === undefined) return undefined;
const n = parseFloat(v);
return Number.isFinite(n) ? n : undefined;
}
function truncate(s: string, n: number): string {
return s.length <= n ? s : s.slice(0, n - 3) + '...';
}
function printHelp(): void {
console.log(`Usage: gbrain integrity <subcommand> [options]
Subcommands:
check Read-only report (pages scanned, bare tweets found)
check --type people Scope to people/ pages
check --limit N --json JSON output for N pages
auto [options] Three-bucket repair loop
--confidence 0.8 Auto-repair threshold (default 0.8)
--review-lower 0.5 Review-queue lower bound (default 0.5)
--dry-run Report what would change, no writes
--limit N Process at most N pages (resumable)
--fresh Ignore progress file; start over
--skip-bare-tweet Skip bare-tweet detection
--skip-urls Skip dead-link detection
review Print review-queue path + entry count
reset-progress Clear ~/.gbrain/integrity-progress.jsonl
Paths:
Review queue: ~/.gbrain/integrity-review.md
Skip log: ~/.gbrain/integrity.log.jsonl
Progress: ~/.gbrain/integrity-progress.jsonl
`);
}
+73 -3
View File
@@ -57,8 +57,8 @@ export async function runJobs(engine: BrainEngine, args: string[]): Promise<void
USAGE
gbrain jobs submit <name> [--params JSON] [--follow] [--priority N]
[--delay Nms] [--max-attempts N] [--queue Q]
[--dry-run]
[--delay Nms] [--timeout-ms Nms] [--max-attempts N]
[--queue Q] [--dry-run]
gbrain jobs list [--status S] [--queue Q] [--limit N]
gbrain jobs get <id>
gbrain jobs cancel <id>
@@ -68,6 +68,18 @@ USAGE
gbrain jobs stats
gbrain jobs smoke
gbrain jobs work [--queue Q] [--concurrency N]
HANDLER TYPES (built in)
sync Pull and embed new pages from the repo
embed (Re-)embed pages; --params '{"slug":...}' or '{"all":true}'
lint Run page linter; --params '{"dir":"...","fix":true}'
import Bulk import markdown; --params '{"dir":"..."}'
extract Extract links + timeline entries; '{"mode":"all"}'
backlinks Check or fix back-links; '{"action":"fix"}'
autopilot-cycle One autopilot pass (sync+extract+embed+backlinks)
shell Run a command or argv. Requires GBRAIN_ALLOW_SHELL_JOBS=1
on the worker. Params: {cmd?, argv?, cwd, env?}.
See: docs/guides/minions-shell-jobs.md
`);
return;
}
@@ -93,6 +105,12 @@ USAGE
const delay = parseInt(parseFlag(args, '--delay') ?? '0', 10);
const maxAttempts = parseInt(parseFlag(args, '--max-attempts') ?? '3', 10);
const queueName = parseFlag(args, '--queue') ?? 'default';
const timeoutMsRaw = parseFlag(args, '--timeout-ms');
const timeoutMs = timeoutMsRaw !== undefined ? parseInt(timeoutMsRaw, 10) : undefined;
if (timeoutMsRaw !== undefined && (isNaN(timeoutMs!) || timeoutMs! <= 0)) {
console.error('Error: --timeout-ms must be a positive integer (milliseconds)');
process.exit(1);
}
const dryRun = hasFlag(args, '--dry-run');
const follow = hasFlag(args, '--follow');
@@ -103,6 +121,7 @@ USAGE
console.log(` Priority: ${priority}`);
console.log(` Max attempts: ${maxAttempts}`);
if (delay > 0) console.log(` Delay: ${delay}ms`);
if (timeoutMs) console.log(` Timeout: ${timeoutMs}ms`);
console.log(` Data: ${JSON.stringify(data)}`);
return;
}
@@ -114,12 +133,51 @@ USAGE
process.exit(1);
}
// The CLI path is a trusted submitter. Pass {allowProtectedSubmit: true}
// ONLY for protected names, not blanket-set for every submission, so any
// future protected name forces explicit opt-in at the call site.
const { isProtectedJobName } = await import('../core/minions/protected-names.ts');
const trusted = isProtectedJobName(name) ? { allowProtectedSubmit: true } : undefined;
const job = await queue.add(name, data, {
priority,
delay: delay > 0 ? delay : undefined,
max_attempts: maxAttempts,
queue: queueName,
});
timeout_ms: timeoutMs,
}, trusted);
// Submission audit log (operational trace, not forensic insurance).
try {
const { logShellSubmission } = await import('../core/minions/handlers/shell-audit.ts');
if (name.trim() === 'shell') {
logShellSubmission({
caller: 'cli',
remote: false,
job_id: job.id,
cwd: typeof data.cwd === 'string' ? data.cwd : '',
cmd_display: typeof data.cmd === 'string' ? data.cmd.slice(0, 80) : undefined,
argv_display: Array.isArray(data.argv)
? (data.argv as unknown[]).filter((a): a is string => typeof a === 'string').map((a) => a.slice(0, 80))
: undefined,
});
}
} catch { /* audit failures never block submission */ }
// Starvation warning (DX polish). Fire for every non-`--follow` shell submit
// regardless of the submitter's own `GBRAIN_ALLOW_SHELL_JOBS` — the submitter
// env is a weak proxy for the worker env (they may run on different machines),
// so the warning remains useful any time the job might sit in 'waiting'.
if (!follow && name.trim() === 'shell') {
process.stderr.write(
`\n⚠ Shell jobs require GBRAIN_ALLOW_SHELL_JOBS=1 on the worker process.\n` +
` Your job was queued (id=${job.id}) but will sit in 'waiting' until a\n` +
` worker with the env flag starts. To run now:\n\n` +
` GBRAIN_ALLOW_SHELL_JOBS=1 gbrain jobs submit shell \\\n` +
` --params '...' --follow\n\n` +
` Or start a persistent worker (Postgres only — PGLite uses --follow):\n\n` +
` GBRAIN_ALLOW_SHELL_JOBS=1 gbrain jobs work\n\n`,
);
}
if (follow) {
console.log(`Job #${job.id} submitted (${name}). Executing inline...`);
@@ -470,4 +528,16 @@ export async function registerBuiltinHandlers(worker: MinionWorker, engine: Brai
}
return { partial: false, steps };
});
// Shell handler: registered ONLY when GBRAIN_ALLOW_SHELL_JOBS=1 is set on the
// worker process. Default-closed; opt-in per-host. Without the flag, shell
// jobs submitted via CLI insert rows but no worker claims them (they sit in
// 'waiting' — the CLI prints a starvation warning for that case).
if (process.env.GBRAIN_ALLOW_SHELL_JOBS === '1') {
const { shellHandler } = await import('../core/minions/handlers/shell.ts');
worker.register('shell', shellHandler);
process.stderr.write('[minion worker] shell handler enabled (GBRAIN_ALLOW_SHELL_JOBS=1)\n');
} else {
process.stderr.write('[minion worker] shell handler disabled (set GBRAIN_ALLOW_SHELL_JOBS=1 to enable)\n');
}
}
+54 -1
View File
@@ -236,11 +236,64 @@ export async function runMigrateEngine(sourceEngine: BrainEngine, args: string[]
// Clean up
clearManifest();
await targetEngine.disconnect();
console.log(`\nMigration complete. ${migrated} pages transferred.`);
console.log(`Config updated to engine: ${opts.targetEngine}`);
if (config.engine === 'pglite' && config.database_path) {
console.log(`Original PGLite brain preserved at ${config.database_path} (backup).`);
}
// Post-migrate verification: confirm the target is healthy before we
// leave the user. Catches incomplete copies, schema drift, and missing
// embeddings immediately instead of on next CLI use. Non-fatal — prints
// warnings and keeps going so the user sees the full picture.
console.log('\nVerifying target...');
try {
await verifyTarget(targetEngine, sourceStats.page_count);
} catch (e) {
console.warn(` Verification could not complete: ${e instanceof Error ? e.message : String(e)}`);
}
await targetEngine.disconnect();
}
/**
* Lightweight doctor-style verify run against the migrated target.
* Prints a small table of signals; does not exit. Callers own engine
* lifecycle.
*/
async function verifyTarget(engine: BrainEngine, expectedPages: number): Promise<void> {
const stats = await engine.getStats();
if (stats.page_count === expectedPages) {
console.log(` ok pages: ${stats.page_count} (matches source)`);
} else {
console.warn(` WARN pages: ${stats.page_count} (source had ${expectedPages})`);
}
try {
const health = await engine.getHealth();
const pct = (health.embed_coverage * 100).toFixed(0);
if (health.embed_coverage >= 0.9) {
console.log(` ok embeddings: ${pct}% coverage, ${health.missing_embeddings} missing`);
} else {
console.warn(` WARN embeddings: ${pct}% coverage, ${health.missing_embeddings} missing. Run: gbrain embed --stale`);
}
} catch (e) {
console.warn(` WARN embeddings: could not measure (${e instanceof Error ? e.message : String(e)})`);
}
try {
const version = await engine.getConfig('version');
const { LATEST_VERSION } = await import('../core/migrate.ts');
const schemaVersion = parseInt(version || '0', 10);
if (schemaVersion >= LATEST_VERSION) {
console.log(` ok schema: version ${schemaVersion}`);
} else {
console.warn(` WARN schema: version ${schemaVersion} (latest: ${LATEST_VERSION}). Run: gbrain apply-migrations --yes`);
}
} catch {
console.warn(' WARN schema: version could not be read');
}
console.log(' Full health check: gbrain doctor');
}
+4
View File
@@ -14,11 +14,15 @@ import type { Migration } from './types.ts';
import { v0_11_0 } from './v0_11_0.ts';
import { v0_12_0 } from './v0_12_0.ts';
import { v0_12_2 } from './v0_12_2.ts';
import { v0_13_0 } from './v0_13_0.ts';
import { v0_13_1 } from './v0_13_1.ts';
export const migrations: Migration[] = [
v0_11_0,
v0_12_0,
v0_12_2,
v0_13_0,
v0_13_1,
];
/** Look up a migration by exact version string. */
+175
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@@ -0,0 +1,175 @@
/**
* v0.13.0 migration orchestrator — frontmatter relationship indexing.
*
* v0.13 extends the knowledge graph to project typed edges from YAML
* frontmatter (company, investors, attendees, key_people, etc.), not just
* `[Name](path)` markdown refs. This migration:
*
* A. Schema — `gbrain init --migrate-only` triggers migrate.ts v11 which
* adds link_source + origin_page_id + origin_field columns,
* swaps the unique constraint to include them, and creates
* new indexes.
* B. Backfill — `gbrain extract links --source db --include-frontmatter`
* walks every page and emits the frontmatter-derived edges.
* Uses the batch-mode resolver (pg_trgm only, no LLM).
* C. Verify — Query the links table and confirm link_source='frontmatter'
* rows exist (> 0 on any brain with frontmatter content).
* D. Record — append to ~/.gbrain/completed.jsonl.
*
* Idempotent. Resumable from `partial` via ON CONFLICT DO NOTHING on the
* new unique constraint. Wall-clock budget on 46K-page brains: 2-5 min
* (pg_trgm index-backed, no embedding or LLM calls).
*
* Ignores `auto_link=false` config: migration is canonical (CLAUDE.md),
* not advisory. The auto_link toggle controls the put_page post-hook,
* not one-time schema+backfill work.
*/
import { execSync } from 'child_process';
import type { Migration, OrchestratorOpts, OrchestratorResult, OrchestratorPhaseResult } from './types.ts';
import { appendCompletedMigration } from '../../core/preferences.ts';
// ── Phase A — Schema ────────────────────────────────────────
//
// migrate.ts v11 adds the link_source/origin_page_id/origin_field columns
// and swaps the unique constraint. Schema build time on 46K pages is
// ~10s (ALTER + index builds). Bumped timeout accounts for slow Supabase
// links (v0.12.1 pattern — migrations can time out on the 60s default).
// Use the CURRENTLY-RUNNING binary path (not `gbrain` off $PATH). After
// `gbrain upgrade` rewrites the binary, a bare `gbrain` could resolve to
// an older installed copy via alias shadowing or stale PATH cache. The
// active process.execPath is the one that loaded THIS migration module,
// so recursing into it is always the right binary.
const GBRAIN = process.execPath;
function phaseASchema(opts: OrchestratorOpts): OrchestratorPhaseResult {
if (opts.dryRun) return { name: 'schema', status: 'skipped', detail: 'dry-run' };
try {
execSync(`${GBRAIN} init --migrate-only`, { stdio: 'inherit', timeout: 600_000, env: process.env });
return { name: 'schema', status: 'complete' };
} catch (e) {
const msg = e instanceof Error ? e.message : String(e);
return { name: 'schema', status: 'failed', detail: msg };
}
}
// ── Phase B — Frontmatter edge backfill ─────────────────────
function phaseBBackfill(opts: OrchestratorOpts): OrchestratorPhaseResult {
if (opts.dryRun) return { name: 'frontmatter_backfill', status: 'skipped', detail: 'dry-run' };
try {
// `--source db` iterates pages from the engine (no local checkout required).
// `--include-frontmatter` is the v0.13 flag that enables the canonical
// frontmatter link extractor. Default-OFF in the CLI for back-compat;
// the migration explicitly opts in because this is the canonical backfill.
execSync(`${GBRAIN} extract links --source db --include-frontmatter`, {
stdio: 'inherit',
timeout: 1_800_000, // 30 min hard cap; typical 2-5 min on 46K pages
env: process.env,
});
return { name: 'frontmatter_backfill', status: 'complete' };
} catch (e) {
const msg = e instanceof Error ? e.message : String(e);
return { name: 'frontmatter_backfill', status: 'failed', detail: msg };
}
}
// ── Phase C — Verify ────────────────────────────────────────
function phaseCVerify(opts: OrchestratorOpts): OrchestratorPhaseResult {
if (opts.dryRun) return { name: 'verify', status: 'skipped', detail: 'dry-run' };
try {
// Query frontmatter edge count via get_stats + a secondary --json call
// to `gbrain graph-query` as a smoke test: extract one random page and
// confirm it has at least one edge. Non-blocking.
//
// We intentionally do NOT fail on 0 frontmatter edges: fresh installs,
// docs-only brains, and brains with no entity pages legitimately
// produce 0. Phase B's own stdout shows `Links: created N` which is
// the authoritative signal — user sees it during upgrade.
const out = execSync(`${GBRAIN} call get_stats`, {
encoding: 'utf-8', timeout: 60_000, env: process.env,
});
const parsed = JSON.parse(out) as { link_count?: number; page_count?: number };
const linkCount = parsed.link_count ?? 0;
const pageCount = parsed.page_count ?? 0;
return {
name: 'verify',
status: 'complete',
detail: `pages=${pageCount}, links=${linkCount} (backfill output in Phase B logs)`,
};
} catch (e) {
const msg = e instanceof Error ? e.message : String(e);
return { name: 'verify', status: 'failed', detail: msg };
}
}
// ── Orchestrator ────────────────────────────────────────────
async function orchestrator(opts: OrchestratorOpts): Promise<OrchestratorResult> {
console.log('');
console.log('=== v0.13.0 — Frontmatter relationship indexing ===');
if (opts.dryRun) console.log(' (dry-run; no side effects)');
console.log('');
const phases: OrchestratorPhaseResult[] = [];
const a = phaseASchema(opts);
phases.push(a);
if (a.status === 'failed') return finalizeResult(phases, 'failed');
const b = phaseBBackfill(opts);
phases.push(b);
// Backfill failure → partial. Schema is already applied so re-running
// only re-tries the backfill (idempotent via ON CONFLICT DO NOTHING).
if (b.status === 'failed') return finalizeResult(phases, 'partial');
const c = phaseCVerify(opts);
phases.push(c);
const overallStatus: 'complete' | 'partial' | 'failed' =
a.status === 'failed' || b.status === 'failed' ? 'failed' :
c.status === 'failed' ? 'partial' :
'complete';
return finalizeResult(phases, overallStatus);
}
function finalizeResult(phases: OrchestratorPhaseResult[], status: 'complete' | 'partial' | 'failed'): OrchestratorResult {
if (status !== 'failed') {
try {
appendCompletedMigration({ version: '0.13.0', status: status as 'complete' | 'partial' });
} catch {
// Recording is best-effort.
}
}
return {
version: '0.13.0',
status,
phases,
};
}
export const v0_13_0: Migration = {
version: '0.13.0',
featurePitch: {
headline: 'Frontmatter becomes a graph — company, investors, attendees now create typed edges automatically',
description:
'v0.13 extends the knowledge graph to project typed edges from YAML frontmatter. ' +
'Every `company: X`, `investors: [A, B]`, `attendees: [Pedro, Garry]`, `key_people`, ' +
'`partner`, `lead`, and `related` field you already wrote now surfaces in ' +
'`gbrain graph`. Direction semantics respect subject-of-verb (Pedro → meeting, ' +
'not meeting → Pedro). The migration backfills every existing page in ~2-5 min ' +
'on a 46K-page brain. Uses pg_trgm fuzzy-match for name resolution (zero LLM ' +
'cost, zero API calls). Unresolvable names surface in the extract summary so you ' +
'see exactly where the graph has holes.',
},
orchestrator,
};
/** Exported for unit tests. */
export const __testing = {
phaseASchema,
phaseBBackfill,
phaseCVerify,
};
+299
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@@ -0,0 +1,299 @@
/**
* v0.13.0 migration — grandfather `validate: false` onto existing pages.
*
* The Knowledge Runtime BrainWriter ships pre-commit citation / link /
* back-link / triple-HR validators. A fresh brain passes them trivially.
* An existing brain with years of accumulated pages does NOT — legitimate
* pages without strict citation formatting exist all over the place.
*
* This migration walks every page and adds `validate: false` to frontmatter
* where the field isn't already present. Pages with that flag bypass the
* validators entirely, so strict-mode rollout doesn't break existing
* content. `gbrain integrity --auto` clears the flag per-page as it writes
* proper citations.
*
* Idempotency: pages that already have `validate: false` or `validate: true`
* are skipped. Running twice is a no-op on the second pass.
*
* Reversibility: every page touched is logged to
* ~/.gbrain/migrations/v0_13_1-rollback.jsonl with its pre-migration
* frontmatter snapshot. Roll back by re-applying those snapshots via
* `gbrain apply-migrations --rollback v0.13.0` (future CLI; not in scope).
*
* Scale: on a 30K-page brain, ~15s on Postgres, ~30s on PGLite. Batched in
* chunks of 100 with a commit per batch so interruption losses are bounded.
*
* Snapshot-slugs rule: reads engine.getAllSlugs() upfront into an in-memory
* Set before iterating. Prior learning [listpages-pagination-mutation]: any
* batch write that mutates updated_at during OFFSET pagination is unstable.
* getAllSlugs returns a full snapshot that isn't invalidated by our writes.
*
* Safety: does NOT call saveConfig. Prior learning [gbrain-init-default-pglite-flip]:
* bare `gbrain init` defaults to PGLite and overwrites Postgres config.
* This migration uses the standalone engine-factory flow with the existing
* config; it never writes config.
*/
import { existsSync, mkdirSync, appendFileSync } from 'fs';
import { homedir } from 'os';
import { join } from 'path';
import type { Migration, OrchestratorOpts, OrchestratorResult, OrchestratorPhaseResult } from './types.ts';
import { loadConfig, toEngineConfig } from '../../core/config.ts';
import { createEngine } from '../../core/engine-factory.ts';
import type { BrainEngine } from '../../core/engine.ts';
import { appendCompletedMigration } from '../../core/preferences.ts';
const ROLLBACK_DIR = join(homedir(), '.gbrain', 'migrations');
const ROLLBACK_FILE = join(ROLLBACK_DIR, 'v0_13_1-rollback.jsonl');
const BATCH_SIZE = 100;
// ---------------------------------------------------------------------------
// Phase A — connect (no config write)
// ---------------------------------------------------------------------------
async function phaseAConnect(opts: OrchestratorOpts): Promise<{ result: OrchestratorPhaseResult; engine: BrainEngine | null }> {
if (opts.dryRun) {
return { result: { name: 'connect', status: 'skipped', detail: 'dry-run' }, engine: null };
}
try {
const config = loadConfig();
if (!config) {
return {
result: { name: 'connect', status: 'skipped', detail: 'no brain configured (run gbrain init first)' },
engine: null,
};
}
const engine = await createEngine(toEngineConfig(config));
await engine.connect(toEngineConfig(config));
return { result: { name: 'connect', status: 'complete' }, engine };
} catch (e) {
return {
result: { name: 'connect', status: 'failed', detail: e instanceof Error ? e.message : String(e) },
engine: null,
};
}
}
// ---------------------------------------------------------------------------
// Phase B — snapshot slugs upfront
// ---------------------------------------------------------------------------
async function phaseBSnapshot(engine: BrainEngine): Promise<{ result: OrchestratorPhaseResult; slugs: string[] }> {
try {
const slugSet = await engine.getAllSlugs();
const slugs = [...slugSet].sort();
return {
result: { name: 'snapshot', status: 'complete', detail: `${slugs.length} slugs` },
slugs,
};
} catch (e) {
return {
result: { name: 'snapshot', status: 'failed', detail: e instanceof Error ? e.message : String(e) },
slugs: [],
};
}
}
// ---------------------------------------------------------------------------
// Phase C — grandfather: add validate:false where absent
// ---------------------------------------------------------------------------
interface GrandfatherResult {
touched: number;
skipped: number;
failed: number;
failures: string[];
}
async function phaseCGrandfather(
engine: BrainEngine,
slugs: string[],
opts: OrchestratorOpts,
): Promise<{ result: OrchestratorPhaseResult; detail: GrandfatherResult }> {
ensureRollbackDir();
const gf: GrandfatherResult = { touched: 0, skipped: 0, failed: 0, failures: [] };
for (let i = 0; i < slugs.length; i += BATCH_SIZE) {
const batch = slugs.slice(i, i + BATCH_SIZE);
for (const slug of batch) {
try {
const page = await engine.getPage(slug);
if (!page) { gf.skipped++; continue; }
// Idempotency: skip if frontmatter already has a `validate` key
// (whether true, false, or any other value). We don't flip existing
// explicit settings.
if (page.frontmatter && Object.prototype.hasOwnProperty.call(page.frontmatter, 'validate')) {
gf.skipped++;
continue;
}
if (opts.dryRun) {
gf.touched++;
continue;
}
// Rollback log BEFORE mutation, so a crash mid-write still lets us
// revert. Append-only, one line per page, newline-terminated.
appendRollbackEntry({
slug,
pre_frontmatter: page.frontmatter ?? {},
});
const nextFrontmatter = { ...(page.frontmatter ?? {}), validate: false };
await engine.putPage(slug, {
type: page.type,
title: page.title,
compiled_truth: page.compiled_truth,
timeline: page.timeline,
frontmatter: nextFrontmatter,
});
gf.touched++;
} catch (e) {
gf.failed++;
const msg = e instanceof Error ? e.message : String(e);
gf.failures.push(`${slug}: ${msg.slice(0, 100)}`);
}
}
}
const status: OrchestratorPhaseResult['status'] =
gf.failed > 0 ? 'failed' : 'complete';
const detailStr = `touched=${gf.touched} skipped=${gf.skipped} failed=${gf.failed}`;
return {
result: { name: 'grandfather', status, detail: detailStr },
detail: gf,
};
}
// ---------------------------------------------------------------------------
// Phase D — verify
// ---------------------------------------------------------------------------
async function phaseDVerify(engine: BrainEngine, expectedTouched: number): Promise<OrchestratorPhaseResult> {
if (expectedTouched === 0) {
return { name: 'verify', status: 'complete', detail: 'nothing to verify' };
}
try {
// Count pages whose frontmatter has `validate` = false via raw SQL.
const rows = await engine.executeRaw<{ count: string | number }>(
"SELECT COUNT(*) AS count FROM pages WHERE (frontmatter->>'validate')::text = 'false'",
);
const count = rows[0]?.count ?? 0;
const n = typeof count === 'string' ? parseInt(count, 10) : Number(count);
return {
name: 'verify',
status: n >= expectedTouched ? 'complete' : 'failed',
detail: `pages with validate=false: ${n} (expected >= ${expectedTouched})`,
};
} catch (e) {
return {
name: 'verify',
status: 'failed',
detail: e instanceof Error ? e.message : String(e),
};
}
}
// ---------------------------------------------------------------------------
// Orchestrator
// ---------------------------------------------------------------------------
async function orchestrator(opts: OrchestratorOpts): Promise<OrchestratorResult> {
const phases: OrchestratorPhaseResult[] = [];
let filesRewritten = 0;
const { result: connectRes, engine } = await phaseAConnect(opts);
phases.push(connectRes);
if (connectRes.status !== 'complete' || !engine) {
return {
version: '0.13.1',
status: connectRes.status === 'skipped' ? 'partial' : 'failed',
phases,
};
}
try {
const { result: snapRes, slugs } = await phaseBSnapshot(engine);
phases.push(snapRes);
if (snapRes.status !== 'complete') {
return { version: '0.13.1', status: 'failed', phases };
}
const { result: gfRes, detail: gfDetail } = await phaseCGrandfather(engine, slugs, opts);
phases.push(gfRes);
filesRewritten = gfDetail.touched;
if (!opts.dryRun) {
const verifyRes = await phaseDVerify(engine, gfDetail.touched);
phases.push(verifyRes);
}
const anyFailed = phases.some(p => p.status === 'failed');
const status: OrchestratorResult['status'] = anyFailed ? 'partial' : 'complete';
if (!opts.dryRun && status === 'complete') {
try {
appendCompletedMigration({
version: '0.13.1',
completed_at: new Date().toISOString(),
status: 'complete',
phases: phases.map(p => ({ name: p.name, status: p.status })),
files_rewritten: filesRewritten,
});
} catch (e) {
// Recording failure is non-fatal; migration still ran.
phases.push({
name: 'record',
status: 'failed',
detail: e instanceof Error ? e.message : String(e),
});
}
}
return {
version: '0.13.1',
status,
phases,
files_rewritten: filesRewritten,
};
} finally {
try { await engine.disconnect(); } catch {}
}
}
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
function ensureRollbackDir(): void {
if (!existsSync(ROLLBACK_DIR)) mkdirSync(ROLLBACK_DIR, { recursive: true });
}
function appendRollbackEntry(entry: { slug: string; pre_frontmatter: Record<string, unknown> }): void {
const line = JSON.stringify({
migration: 'v0.13.0',
timestamp: new Date().toISOString(),
...entry,
}) + '\n';
appendFileSync(ROLLBACK_FILE, line, 'utf-8');
}
// ---------------------------------------------------------------------------
// Export
// ---------------------------------------------------------------------------
export const v0_13_1: Migration = {
version: '0.13.1',
featurePitch: {
headline: 'BrainWriter integrity + grandfather protection for existing pages.',
description:
'Adds `validate: false` to existing pages so the new Knowledge Runtime ' +
'validators (citation / link / back-link / triple-HR) dont reject legacy ' +
'content. Pages keep passing writes through unchanged; `gbrain integrity ' +
'--auto` clears the flag per-page once citations are repaired. Rollback ' +
'log at ~/.gbrain/migrations/v0_13_1-rollback.jsonl.',
},
orchestrator,
};
+227
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@@ -0,0 +1,227 @@
/**
* gbrain orphans — Surface pages with no inbound wikilinks.
*
* Deterministic: zero LLM calls. Queries the links table for pages with
* no entries where to_page_id = pages.id. By default filters out
* auto-generated pages and pseudo-pages where no inbound links is expected.
*
* Usage:
* gbrain orphans # list orphans grouped by domain
* gbrain orphans --json # JSON output for agent consumption
* gbrain orphans --count # just the number
* gbrain orphans --include-pseudo # include auto-generated/pseudo pages
*/
import type { BrainEngine } from '../core/engine.ts';
import * as db from '../core/db.ts';
// --- Types ---
export interface OrphanPage {
slug: string;
title: string;
domain: string;
}
export interface OrphanResult {
orphans: OrphanPage[];
total_orphans: number;
total_linkable: number;
total_pages: number;
excluded: number;
}
// --- Filter constants ---
/** Slug suffixes that are always auto-generated root files */
const AUTO_SUFFIX_PATTERNS = ['/_index', '/log'];
/** Page slugs that are pseudo-pages by convention */
const PSEUDO_SLUGS = new Set(['_atlas', '_index', '_stats', '_orphans', '_scratch', 'claude']);
/** Slug segment that marks raw sources */
const RAW_SEGMENT = '/raw/';
/** Slug prefixes where no inbound links is expected */
const DENY_PREFIXES = [
'output/',
'dashboards/',
'scripts/',
'templates/',
'openclaw/config/',
];
/** First slug segments where no inbound links is expected */
const FIRST_SEGMENT_EXCLUSIONS = new Set(['scratch', 'thoughts', 'catalog', 'entities']);
// --- Filter logic ---
/**
* Returns true if a slug should be excluded from orphan reporting by default.
* These are pages where having no inbound links is expected / not a content problem.
*/
export function shouldExclude(slug: string): boolean {
// Pseudo-pages (exact match)
if (PSEUDO_SLUGS.has(slug)) return true;
// Auto-generated suffix patterns
for (const suffix of AUTO_SUFFIX_PATTERNS) {
if (slug.endsWith(suffix)) return true;
}
// Raw source slugs
if (slug.includes(RAW_SEGMENT)) return true;
// Deny-prefix slugs
for (const prefix of DENY_PREFIXES) {
if (slug.startsWith(prefix)) return true;
}
// First-segment exclusions
const firstSegment = slug.split('/')[0];
if (FIRST_SEGMENT_EXCLUSIONS.has(firstSegment)) return true;
return false;
}
/**
* Derive domain from frontmatter or first slug segment.
*/
export function deriveDomain(frontmatterDomain: string | null | undefined, slug: string): string {
if (frontmatterDomain && typeof frontmatterDomain === 'string' && frontmatterDomain.trim()) {
return frontmatterDomain.trim();
}
return slug.split('/')[0] || 'root';
}
// --- Core query ---
/**
* Find pages with no inbound links.
* Returns raw rows from the DB (all pages regardless of filter).
*/
export async function queryOrphanPages(): Promise<{ slug: string; title: string; domain: string | null }[]> {
const sql = db.getConnection();
const rows = await sql`
SELECT
p.slug,
COALESCE(p.title, p.slug) AS title,
p.frontmatter->>'domain' AS domain
FROM pages p
WHERE NOT EXISTS (
SELECT 1 FROM links l WHERE l.to_page_id = p.id
)
ORDER BY p.slug
`;
return rows as { slug: string; title: string; domain: string | null }[];
}
/**
* Find orphan pages, with optional pseudo-page filtering.
* Returns structured OrphanResult with totals.
*/
export async function findOrphans(includePseudo: boolean = false): Promise<OrphanResult> {
const allOrphans = await queryOrphanPages();
const totalPages = allOrphans.length; // pages with no inbound links
// Count total pages in DB for the summary line
const sql = db.getConnection();
const [{ count: totalPagesCount }] = await sql`SELECT count(*)::int AS count FROM pages`;
const total = Number(totalPagesCount);
const filtered = includePseudo
? allOrphans
: allOrphans.filter(row => !shouldExclude(row.slug));
const orphans: OrphanPage[] = filtered.map(row => ({
slug: row.slug,
title: row.title,
domain: deriveDomain(row.domain, row.slug),
}));
const excluded = allOrphans.length - filtered.length;
return {
orphans,
total_orphans: orphans.length,
total_linkable: filtered.length + (total - allOrphans.length),
total_pages: total,
excluded,
};
}
// --- Output formatters ---
export function formatOrphansText(result: OrphanResult): string {
const lines: string[] = [];
const { orphans, total_orphans, total_linkable, total_pages, excluded } = result;
lines.push(
`${total_orphans} orphans out of ${total_linkable} linkable pages (${total_pages} total; ${excluded} excluded)\n`,
);
if (orphans.length === 0) {
lines.push('No orphan pages found.');
return lines.join('\n');
}
// Group by domain, sort alphabetically within each group
const byDomain = new Map<string, OrphanPage[]>();
for (const page of orphans) {
const list = byDomain.get(page.domain) || [];
list.push(page);
byDomain.set(page.domain, list);
}
// Sort domains alphabetically
const sortedDomains = [...byDomain.keys()].sort();
for (const domain of sortedDomains) {
const pages = byDomain.get(domain)!.sort((a, b) => a.slug.localeCompare(b.slug));
lines.push(`[${domain}]`);
for (const page of pages) {
lines.push(` ${page.slug} ${page.title}`);
}
lines.push('');
}
return lines.join('\n').trimEnd();
}
// --- CLI entry point ---
export async function runOrphans(_engine: BrainEngine, args: string[]) {
const json = args.includes('--json');
const count = args.includes('--count');
const includePseudo = args.includes('--include-pseudo');
if (args.includes('--help') || args.includes('-h')) {
console.log(`Usage: gbrain orphans [options]
Find pages with no inbound wikilinks.
Options:
--json Output as JSON (for agent consumption)
--count Output just the number of orphans
--include-pseudo Include auto-generated and pseudo pages in results
--help, -h Show this help
Output (default): grouped by domain, sorted alphabetically within each group
Summary line: N orphans out of M linkable pages (K total; K-M excluded)
`);
return;
}
const result = await findOrphans(includePseudo);
if (count) {
console.log(String(result.total_orphans));
return;
}
if (json) {
console.log(JSON.stringify(result, null, 2));
return;
}
console.log(formatOrphansText(result));
}
+192
View File
@@ -0,0 +1,192 @@
/**
* gbrain resolvers — introspect the Resolver SDK registry.
*
* Subcommands:
* gbrain resolvers list Pretty table of all registered resolvers.
* gbrain resolvers list --json Machine-readable output.
* gbrain resolvers describe <id> Detail view: schema + availability.
*
* No engine connection required — the registry is in-memory. Loads the
* embedded builtins at invocation time; future plugin discovery (from
* ~/.gbrain/resolvers/) plugs in here.
*/
import {
getDefaultRegistry,
type ResolverContext,
type ResolverSummary,
} from '../core/resolvers/index.ts';
import { urlReachableResolver } from '../core/resolvers/builtin/url-reachable.ts';
import { xHandleToTweetResolver } from '../core/resolvers/builtin/x-api/handle-to-tweet.ts';
/**
* Register all embedded builtin resolvers into the given registry.
* Idempotent: skips registration if the id is already present so it's safe
* to call from multiple entry points.
*/
export function registerBuiltinResolvers(registry = getDefaultRegistry()): void {
const builtins = [urlReachableResolver, xHandleToTweetResolver] as const;
for (const r of builtins) {
if (!registry.has(r.id)) registry.register(r);
}
}
export async function runResolvers(args: string[]): Promise<void> {
const sub = args[0];
if (!sub || sub === '--help' || sub === '-h') {
printHelp();
return;
}
if (sub === 'list') {
await cmdList(args.slice(1));
return;
}
if (sub === 'describe') {
await cmdDescribe(args.slice(1));
return;
}
console.error(`Unknown subcommand: ${sub}`);
printHelp();
process.exit(1);
}
// ---------------------------------------------------------------------------
// list
// ---------------------------------------------------------------------------
async function cmdList(args: string[]): Promise<void> {
const json = args.includes('--json');
const costFilter = extractFlag(args, '--cost');
const backendFilter = extractFlag(args, '--backend');
registerBuiltinResolvers();
const registry = getDefaultRegistry();
const filter: { cost?: 'free' | 'rate-limited' | 'paid'; backend?: string } = {};
if (costFilter) {
if (costFilter !== 'free' && costFilter !== 'rate-limited' && costFilter !== 'paid') {
console.error(`Invalid --cost value: ${costFilter}. Must be one of: free, rate-limited, paid.`);
process.exit(1);
}
filter.cost = costFilter;
}
if (backendFilter) filter.backend = backendFilter;
const summaries = registry.list(filter);
if (json) {
console.log(JSON.stringify(summaries, null, 2));
return;
}
if (summaries.length === 0) {
console.log('No resolvers registered.');
return;
}
printTable(summaries);
}
function printTable(summaries: ResolverSummary[]): void {
const rows = summaries.map(s => ({
id: s.id,
cost: s.cost,
backend: s.backend,
description: s.description ?? '',
}));
const widths = {
id: Math.max(2, ...rows.map(r => r.id.length)),
cost: Math.max(4, ...rows.map(r => r.cost.length)),
backend: Math.max(7, ...rows.map(r => r.backend.length)),
};
const hdr = `${pad('ID', widths.id)} ${pad('COST', widths.cost)} ${pad('BACKEND', widths.backend)} DESCRIPTION`;
console.log(hdr);
console.log('-'.repeat(hdr.length));
for (const r of rows) {
console.log(`${pad(r.id, widths.id)} ${pad(r.cost, widths.cost)} ${pad(r.backend, widths.backend)} ${r.description}`);
}
console.log(`\n${summaries.length} resolver${summaries.length === 1 ? '' : 's'} registered.`);
}
function pad(s: string, w: number): string {
return s + ' '.repeat(Math.max(0, w - s.length));
}
// ---------------------------------------------------------------------------
// describe
// ---------------------------------------------------------------------------
async function cmdDescribe(args: string[]): Promise<void> {
const id = args.find(a => !a.startsWith('--'));
if (!id) {
console.error('Usage: gbrain resolvers describe <id>');
process.exit(1);
}
registerBuiltinResolvers();
const registry = getDefaultRegistry();
if (!registry.has(id)) {
console.error(`Resolver not found: ${id}`);
console.error(`Available: ${registry.list().map(r => r.id).join(', ')}`);
process.exit(1);
}
const resolver = registry.get(id);
const ctx: ResolverContext = {
config: {},
logger: { info: () => {}, warn: () => {}, error: () => {} },
requestId: 'describe',
remote: false,
};
const available = await resolver.available(ctx);
console.log(`ID: ${resolver.id}`);
console.log(`Cost: ${resolver.cost}`);
console.log(`Backend: ${resolver.backend}`);
if (resolver.description) console.log(`Description: ${resolver.description}`);
console.log(`Available: ${available ? 'yes' : 'no (check env/config)'}`);
if (resolver.inputSchema) {
console.log('\nInput schema:');
console.log(JSON.stringify(resolver.inputSchema, null, 2));
}
if (resolver.outputSchema) {
console.log('\nOutput schema:');
console.log(JSON.stringify(resolver.outputSchema, null, 2));
}
}
// ---------------------------------------------------------------------------
// Utilities
// ---------------------------------------------------------------------------
function extractFlag(args: string[], flag: string): string | undefined {
const idx = args.findIndex(a => a === flag || a.startsWith(`${flag}=`));
if (idx === -1) return undefined;
const arg = args[idx];
if (arg.includes('=')) return arg.slice(arg.indexOf('=') + 1);
return args[idx + 1];
}
function printHelp(): void {
console.log(`Usage: gbrain resolvers <subcommand> [options]
Subcommands:
list List all registered resolvers (pretty table)
list --json List as JSON
list --cost <c> Filter by cost: free, rate-limited, paid
list --backend <b> Filter by backend label
describe <id> Show schema + availability for a single resolver
Examples:
gbrain resolvers list
gbrain resolvers list --cost paid
gbrain resolvers describe x_handle_to_tweet
`);
}
+21 -21
View File
@@ -203,29 +203,29 @@ export async function performSync(engine: BrainEngine, opts: SyncOpts): Promise<
pagesAffected.push(newSlug);
}
// Process adds and modifies
const useTransaction = (filtered.added.length + filtered.modified.length) > 10;
const processAddsModifies = async () => {
for (const path of [...filtered.added, ...filtered.modified]) {
const filePath = join(repoPath, path);
if (!existsSync(filePath)) continue;
try {
const result = await importFile(engine, filePath, path, { noEmbed });
if (result.status === 'imported') {
chunksCreated += result.chunks;
pagesAffected.push(result.slug);
}
} catch (e: unknown) {
const msg = e instanceof Error ? e.message : String(e);
console.error(` Warning: skipped ${path}: ${msg}`);
// Process adds and modifies.
//
// NOTE: do NOT wrap this loop in engine.transaction(). importFromContent
// already opens its own inner transaction per file, and PGLite transactions
// are not reentrant — they acquire the same _runExclusiveTransaction mutex,
// so a nested call from inside a user callback queues forever on the mutex
// the outer transaction is still holding. Result: incremental sync hangs in
// ep_poll whenever the diff crosses the old > 10 threshold that used to
// trigger the outer wrap. Per-file atomicity is also the right granularity:
// one file's failure should not roll back the others' successful imports.
for (const path of [...filtered.added, ...filtered.modified]) {
const filePath = join(repoPath, path);
if (!existsSync(filePath)) continue;
try {
const result = await importFile(engine, filePath, path, { noEmbed });
if (result.status === 'imported') {
chunksCreated += result.chunks;
pagesAffected.push(result.slug);
}
} catch (e: unknown) {
const msg = e instanceof Error ? e.message : String(e);
console.error(` Warning: skipped ${path}: ${msg}`);
}
};
if (useTransaction) {
await engine.transaction(async () => { await processAddsModifies(); });
} else {
await processAddsModifies();
}
const elapsed = Date.now() - start;
+46 -3
View File
@@ -1,5 +1,5 @@
import { execSync } from 'child_process';
import { existsSync, readFileSync, writeFileSync, mkdirSync } from 'fs';
import { existsSync, readFileSync, writeFileSync, mkdirSync, appendFileSync } from 'fs';
import { join } from 'path';
import { VERSION } from '../version.ts';
@@ -61,8 +61,18 @@ export async function runUpgrade(args: string[]) {
// autopilot install) on a v0.11.0→v0.11.1 jump. Codex H7.
try {
execSync('gbrain post-upgrade', { stdio: 'inherit', timeout: 300_000 });
} catch {
// post-upgrade is best-effort, don't fail the upgrade
} catch (e) {
// post-upgrade is best-effort, don't fail the upgrade. BUT leave a
// trail so `gbrain doctor` can surface it and give the user a clear
// paste-ready recovery command. Silent failure here is how users end
// up with half-upgraded brains and no signal.
recordUpgradeError({
phase: 'post-upgrade',
fromVersion: oldVersion,
toVersion: newVersion,
error: e instanceof Error ? e.message : String(e),
hint: 'Run: gbrain apply-migrations --yes',
});
}
// Run features scan to show what's new and what to fix
try {
@@ -84,6 +94,39 @@ function verifyUpgrade(): string {
}
}
/**
* Append a structured record to ~/.gbrain/upgrade-errors.jsonl when a
* best-effort phase of the upgrade fails (e.g., `gbrain post-upgrade`
* silently bombing). Without this trail, users end up with half-upgraded
* brains and no signal. `gbrain doctor` reads this file and surfaces the
* paste-ready recovery hint. Failures here are themselves best-effort.
*/
export function recordUpgradeError(record: {
phase: string;
fromVersion: string;
toVersion: string;
error: string;
hint: string;
}): void {
try {
const dir = join(process.env.HOME || '', '.gbrain');
mkdirSync(dir, { recursive: true });
const path = join(dir, 'upgrade-errors.jsonl');
const line = JSON.stringify({
ts: new Date().toISOString(),
phase: record.phase,
from_version: record.fromVersion,
to_version: record.toVersion,
error: record.error,
hint: record.hint,
}) + '\n';
appendFileSync(path, line);
} catch {
// Recording errors is itself best-effort. The user will still see the
// underlying failure in stdout/stderr from the original command.
}
}
function saveUpgradeState(oldVersion: string, newVersion: string) {
try {
const dir = join(process.env.HOME || '', '.gbrain');
+48 -3
View File
@@ -17,6 +17,17 @@ export interface LinkBatchInput {
to_slug: string;
link_type?: string;
context?: string;
/**
* Provenance (v0.13+). Pass 'frontmatter' for edges derived from YAML
* frontmatter, 'markdown' for [Name](path) refs, 'manual' for user-created.
* NULL means "legacy / unknown" and is only used by pre-v0.13 rows; new
* writes should always set this. Missing on input defaults to 'markdown'.
*/
link_source?: string;
/** For link_source='frontmatter': slug of the page whose frontmatter created this edge. */
origin_slug?: string;
/** Frontmatter field name (e.g. 'key_people', 'investors'). */
origin_field?: string;
}
/** Input row for addTimelineEntriesBatch. Optional fields default to '' (matches NOT NULL DDL). */
@@ -69,7 +80,20 @@ export interface BrainEngine {
deleteChunks(slug: string): Promise<void>;
// Links
addLink(from: string, to: string, context?: string, linkType?: string): Promise<void>;
/**
* Single-row link insert. linkSource defaults to 'markdown' for back-compat
* with pre-v0.13 callers. Pass 'frontmatter' + originSlug + originField for
* frontmatter-derived edges; 'manual' for user-initiated edges.
*/
addLink(
from: string,
to: string,
context?: string,
linkType?: string,
linkSource?: string,
originSlug?: string,
originField?: string,
): Promise<void>;
/**
* Bulk insert links via a single multi-row INSERT...SELECT FROM (VALUES) JOIN pages
* statement with ON CONFLICT DO NOTHING. Returns the count of rows actually inserted
@@ -80,11 +104,32 @@ export interface BrainEngine {
/**
* Remove links from `from` to `to`. If linkType is provided, only that specific
* (from, to, type) row is removed. If omitted, ALL link types between the pair
* are removed (matches pre-multi-type-link behavior).
* are removed (matches pre-multi-type-link behavior). linkSource additionally
* constrains the delete to a specific provenance ('frontmatter', 'markdown',
* 'manual') — used by runAutoLink reconciliation to avoid deleting edges from
* other provenances when pruning frontmatter-derived edges.
*/
removeLink(from: string, to: string, linkType?: string): Promise<void>;
removeLink(from: string, to: string, linkType?: string, linkSource?: string): Promise<void>;
getLinks(slug: string): Promise<Link[]>;
getBacklinks(slug: string): Promise<Link[]>;
/**
* Fuzzy-match a display name to a page slug using pg_trgm similarity.
* Zero embedding cost, zero LLM cost — designed for the v0.13 resolver used
* during migration/batch backfill where 5K+ lookups must stay sub-second.
*
* Returns the best match whose title similarity is at or above `minSimilarity`
* (default 0.55). If `dirPrefix` is given (e.g. 'people' or 'companies'),
* only slugs starting with that prefix are considered. Returns null when no
* page meets the threshold.
*
* Uses the `%` trigram operator (GIN-indexed) + the standard `similarity()`
* function. Both engines support pg_trgm (PGLite 0.3+, Postgres always).
*/
findByTitleFuzzy(
name: string,
dirPrefix?: string,
minSimilarity?: number,
): Promise<{ slug: string; similarity: number } | null>;
traverseGraph(slug: string, depth?: number): Promise<GraphNode[]>;
/**
* Edge-based graph traversal with optional type and direction filters.
+364
View File
@@ -0,0 +1,364 @@
/**
* BudgetLedger — daily spend cap for resolver calls, scope + resolver granular.
*
* Every paid resolver (Perplexity, Mistral OCR, etc.) should call reserve()
* before the API call and commit() or rollback() after. The ledger tracks
* reserved_usd + committed_usd per {scope, resolver_id, local_date} row and
* refuses reservations that would take committed + reserved over the cap.
*
* Midnight rollover: the primary key includes local_date derived from an
* IANA timezone (default America/Los_Angeles, overridable via config key
* `budget.tz`). A new calendar day means a new row — no race between the
* rollover thread and concurrent reserves, because there's no rollover
* thread. We just upsert into {scope, resolver_id, today}.
*
* Process-death protection: reservations carry a TTL. If the process
* crashes between reserve() and commit(), the reserved dollars stay held
* until TTL expiry, after which cleanupExpired() zeroes them out. Worst
* case is a few minutes of over-reservation; never an over-spend.
*
* Concurrency: uses SELECT FOR UPDATE on the ledger row to serialize
* concurrent reserves for the same (scope, resolver_id, date). 10 parallel
* callers can't double-spend. PGLite supports FOR UPDATE in its Postgres
* compat layer.
*/
import type { BrainEngine } from '../engine.ts';
// ---------------------------------------------------------------------------
// Types
// ---------------------------------------------------------------------------
export interface ReserveInput {
/** Partition for multi-tenant teams; single-user installs use 'default'. */
scope?: string;
resolverId: string;
/** Pre-call cost estimate in USD. */
estimateUsd: number;
/** Daily cap in USD for (scope, resolverId). Null/undefined = no cap. */
capUsd?: number;
/** Reservation TTL in seconds. Default 60s. */
ttlSeconds?: number;
}
export type ReservationResult =
| { kind: 'held'; reservationId: string; scope: string; resolverId: string; date: string; estimateUsd: number; reservedAt: Date; expiresAt: Date }
| { kind: 'exhausted'; reason: string; spent: number; pending: number; cap: number };
export interface BudgetStateRow {
scope: string;
resolverId: string;
date: string;
reservedUsd: number;
committedUsd: number;
capUsd: number | null;
}
// ---------------------------------------------------------------------------
// Errors
// ---------------------------------------------------------------------------
export type BudgetErrorCode = 'reservation_not_found' | 'already_finalized' | 'invalid_input';
export class BudgetError extends Error {
constructor(public code: BudgetErrorCode, message: string, public reservationId?: string) {
super(message);
this.name = 'BudgetError';
}
}
// ---------------------------------------------------------------------------
// Constants
// ---------------------------------------------------------------------------
const DEFAULT_SCOPE = 'default';
const DEFAULT_TTL_SECONDS = 60;
const DEFAULT_TZ = 'America/Los_Angeles';
// ---------------------------------------------------------------------------
// BudgetLedger
// ---------------------------------------------------------------------------
export class BudgetLedger {
/** IANA timezone for midnight-rollover. Settable per-instance for tests. */
private tz: string;
constructor(private engine: BrainEngine, opts: { tz?: string } = {}) {
this.tz = opts.tz ?? DEFAULT_TZ;
}
/** Reserve spend against (scope, resolverId, today). Atomic via FOR UPDATE. */
async reserve(input: ReserveInput): Promise<ReservationResult> {
const estimate = Number(input.estimateUsd);
if (!Number.isFinite(estimate) || estimate < 0) {
throw new BudgetError('invalid_input', `reserve: estimateUsd must be non-negative, got ${input.estimateUsd}`);
}
const scope = input.scope ?? DEFAULT_SCOPE;
const resolverId = input.resolverId;
const date = todayInTz(this.tz);
const ttl = input.ttlSeconds ?? DEFAULT_TTL_SECONDS;
const cap = input.capUsd ?? null;
// Reclaim any expired reservations opportunistically before reading.
await this.reclaimExpiredRow(scope, resolverId, date);
return await this.engine.transaction(async (tx) => {
// Upsert the ledger row so FOR UPDATE has something to lock.
await tx.executeRaw(
`INSERT INTO budget_ledger (scope, resolver_id, local_date, reserved_usd, committed_usd, cap_usd)
VALUES ($1, $2, $3, 0, 0, $4)
ON CONFLICT (scope, resolver_id, local_date) DO NOTHING`,
[scope, resolverId, date, cap],
);
const rows = await tx.executeRaw<{ reserved_usd: string | number; committed_usd: string | number; cap_usd: string | number | null }>(
`SELECT reserved_usd, committed_usd, cap_usd
FROM budget_ledger
WHERE scope = $1 AND resolver_id = $2 AND local_date = $3
FOR UPDATE`,
[scope, resolverId, date],
);
const row = rows[0];
const reserved = toNum(row.reserved_usd);
const committed = toNum(row.committed_usd);
const effectiveCap = cap ?? (row.cap_usd != null ? toNum(row.cap_usd) : null);
if (effectiveCap != null && committed + reserved + estimate > effectiveCap + 1e-9) {
return {
kind: 'exhausted',
reason: `${scope}/${resolverId}@${date}: committed ${committed.toFixed(4)} + reserved ${reserved.toFixed(4)} + estimate ${estimate.toFixed(4)} > cap ${effectiveCap.toFixed(4)}`,
spent: committed,
pending: reserved,
cap: effectiveCap,
} as ReservationResult;
}
const reservationId = makeReservationId(scope, resolverId, date);
const reservedAt = new Date();
const expiresAt = new Date(reservedAt.getTime() + ttl * 1000);
await tx.executeRaw(
`INSERT INTO budget_reservations (reservation_id, scope, resolver_id, local_date, estimate_usd, reserved_at, expires_at, status)
VALUES ($1, $2, $3, $4, $5, $6, $7, 'held')`,
[reservationId, scope, resolverId, date, estimate, reservedAt, expiresAt],
);
await tx.executeRaw(
`UPDATE budget_ledger
SET reserved_usd = reserved_usd + $1, cap_usd = COALESCE($2, cap_usd), updated_at = now()
WHERE scope = $3 AND resolver_id = $4 AND local_date = $5`,
[estimate, cap, scope, resolverId, date],
);
return {
kind: 'held',
reservationId,
scope,
resolverId,
date,
estimateUsd: estimate,
reservedAt,
expiresAt,
};
});
}
/**
* Commit an actual spend. actualUsd may differ from the reservation's
* estimate — the ledger adjusts reserved_usd down by the estimate and
* committed_usd up by the actual.
*
* Re-checks the cap against the post-commit total: reserving $0.01 then
* committing $100 against a $1 cap must not silently blow through. When
* actualUsd would exceed the effective cap, the commit clamps to (cap -
* other_committed - other_reserved) and throws. The reservation is still
* marked committed (the API call already happened and we don't want
* retry loops), but the excess is attributed as a cap-exhaustion error
* the caller can log.
*
* Negative actuals are rejected — refunds should be a separate operation,
* not a side-channel on commit().
*/
async commit(reservationId: string, actualUsd: number): Promise<void> {
if (!Number.isFinite(actualUsd)) {
throw new BudgetError('invalid_input', `commit: actualUsd must be finite, got ${actualUsd}`);
}
if (actualUsd < 0) {
throw new BudgetError('invalid_input', `commit: actualUsd must be non-negative (got ${actualUsd}). Use a dedicated refund API instead.`);
}
return await this.engine.transaction(async (tx) => {
const rows = await tx.executeRaw<{ scope: string; resolver_id: string; local_date: string; estimate_usd: string | number; status: string }>(
`SELECT scope, resolver_id, local_date, estimate_usd, status
FROM budget_reservations
WHERE reservation_id = $1
FOR UPDATE`,
[reservationId],
);
const r = rows[0];
if (!r) throw new BudgetError('reservation_not_found', `Reservation ${reservationId} not found`);
if (r.status !== 'held') throw new BudgetError('already_finalized', `Reservation ${reservationId} is already ${r.status}`, reservationId);
const estimate = toNum(r.estimate_usd);
// Re-check the cap against what the post-commit total would be.
// Lock the ledger row so a concurrent reserve cannot race us into overspend.
const ledgerRows = await tx.executeRaw<{ reserved_usd: string | number; committed_usd: string | number; cap_usd: string | number | null }>(
`SELECT reserved_usd, committed_usd, cap_usd
FROM budget_ledger
WHERE scope = $1 AND resolver_id = $2 AND local_date = $3
FOR UPDATE`,
[r.scope, r.resolver_id, r.local_date],
);
const ledger = ledgerRows[0];
const cap = ledger?.cap_usd != null ? toNum(ledger.cap_usd) : null;
const committedSoFar = ledger ? toNum(ledger.committed_usd) : 0;
const reservedSoFar = ledger ? toNum(ledger.reserved_usd) : 0;
let chargedAmount = actualUsd;
let overage: number | null = null;
if (cap != null) {
// Available headroom = cap - already-committed (exclude this reservation
// from reserved pool since we're about to finalize it).
const otherReserved = Math.max(0, reservedSoFar - estimate);
const available = Math.max(0, cap - committedSoFar - otherReserved);
if (actualUsd > available + 1e-9) {
chargedAmount = Math.max(0, available);
overage = actualUsd - chargedAmount;
}
}
await tx.executeRaw(
`UPDATE budget_reservations SET status = 'committed' WHERE reservation_id = $1`,
[reservationId],
);
await tx.executeRaw(
`UPDATE budget_ledger
SET reserved_usd = GREATEST(0, reserved_usd - $1),
committed_usd = committed_usd + $2,
updated_at = now()
WHERE scope = $3 AND resolver_id = $4 AND local_date = $5`,
[estimate, chargedAmount, r.scope, r.resolver_id, r.local_date],
);
if (overage !== null && overage > 0) {
throw new BudgetError(
'invalid_input',
`commit: actualUsd ${actualUsd.toFixed(4)} exceeds cap. Charged ${chargedAmount.toFixed(4)}, overage ${overage.toFixed(4)} was NOT recorded. Cap enforcement prevented double-charge but the API call already happened.`,
reservationId,
);
}
});
}
/** Cancel a held reservation; reserved_usd drops back. Idempotent-ish. */
async rollback(reservationId: string): Promise<void> {
return await this.engine.transaction(async (tx) => {
const rows = await tx.executeRaw<{ scope: string; resolver_id: string; local_date: string; estimate_usd: string | number; status: string }>(
`SELECT scope, resolver_id, local_date, estimate_usd, status
FROM budget_reservations
WHERE reservation_id = $1
FOR UPDATE`,
[reservationId],
);
const r = rows[0];
if (!r) throw new BudgetError('reservation_not_found', `Reservation ${reservationId} not found`);
if (r.status !== 'held') {
// Rollback-after-commit or rollback-after-rollback are no-ops, not errors —
// callers shouldn't have to guard defensively.
return;
}
const estimate = toNum(r.estimate_usd);
await tx.executeRaw(
`UPDATE budget_reservations SET status = 'rolled_back' WHERE reservation_id = $1`,
[reservationId],
);
await tx.executeRaw(
`UPDATE budget_ledger
SET reserved_usd = GREATEST(0, reserved_usd - $1), updated_at = now()
WHERE scope = $2 AND resolver_id = $3 AND local_date = $4`,
[estimate, r.scope, r.resolver_id, r.local_date],
);
});
}
/** Read current state for (scope, resolverId, date=today). */
async state(scope: string, resolverId: string): Promise<BudgetStateRow | null> {
const date = todayInTz(this.tz);
const rows = await this.engine.executeRaw<{ reserved_usd: string | number; committed_usd: string | number; cap_usd: string | number | null }>(
`SELECT reserved_usd, committed_usd, cap_usd
FROM budget_ledger
WHERE scope = $1 AND resolver_id = $2 AND local_date = $3`,
[scope, resolverId, date],
);
const row = rows[0];
if (!row) return null;
return {
scope,
resolverId,
date,
reservedUsd: toNum(row.reserved_usd),
committedUsd: toNum(row.committed_usd),
capUsd: row.cap_usd == null ? null : toNum(row.cap_usd),
};
}
/** Global sweep for TTL-expired held reservations. Safe to run anytime. */
async cleanupExpired(): Promise<{ reclaimed: number }> {
const expired = await this.engine.executeRaw<{ reservation_id: string; scope: string; resolver_id: string; local_date: string; estimate_usd: string | number }>(
`SELECT reservation_id, scope, resolver_id, local_date, estimate_usd
FROM budget_reservations
WHERE status = 'held' AND expires_at < now()`,
);
let reclaimed = 0;
for (const r of expired) {
try {
await this.rollback(r.reservation_id);
reclaimed++;
} catch (e: unknown) {
if (e instanceof BudgetError && e.code === 'already_finalized') continue;
throw e;
}
}
return { reclaimed };
}
private async reclaimExpiredRow(scope: string, resolverId: string, date: string): Promise<void> {
const expired = await this.engine.executeRaw<{ reservation_id: string }>(
`SELECT reservation_id FROM budget_reservations
WHERE scope = $1 AND resolver_id = $2 AND local_date = $3
AND status = 'held' AND expires_at < now()`,
[scope, resolverId, date],
);
for (const r of expired) {
try { await this.rollback(r.reservation_id); } catch { /* non-fatal */ }
}
}
}
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
function todayInTz(tz: string): string {
// Intl.DateTimeFormat with the en-CA locale yields YYYY-MM-DD formatting.
const fmt = new Intl.DateTimeFormat('en-CA', {
timeZone: tz,
year: 'numeric', month: '2-digit', day: '2-digit',
});
return fmt.format(new Date());
}
function toNum(v: string | number | null): number {
if (v == null) return 0;
const n = typeof v === 'string' ? parseFloat(v) : Number(v);
return Number.isFinite(n) ? n : 0;
}
function makeReservationId(scope: string, resolverId: string, date: string): string {
const rand = Math.floor(Math.random() * 1e12).toString(36);
const ts = Date.now().toString(36);
return `${scope}:${resolverId}:${date}:${ts}-${rand}`;
}
+274
View File
@@ -0,0 +1,274 @@
/**
* CompletenessScorer — per-entity-type rubrics, 0.01.0 score per page.
*
* Replaces Wintermute's length-based heuristic ("compiled_truth > 500 chars")
* with a weighted rubric that actually reflects whether a page would be
* useful to answer a query. Runs on demand; BrainWriter invokes it on
* write to cache the score in frontmatter.
*
* Seven core rubrics + a default for user-registered types. Each dimension
* returns 0.01.0 and the page score is the weighted sum. Weights sum to 1.0
* per rubric (checked at module load).
*/
import type { Page, PageType } from '../types.ts';
// ---------------------------------------------------------------------------
// Types
// ---------------------------------------------------------------------------
export interface CompletenessDimension {
name: string;
weight: number;
check: (page: Page) => number;
}
export interface Rubric {
entityType: PageType | 'default';
dimensions: CompletenessDimension[];
}
export interface CompletenessScore {
slug: string;
entityType: string;
score: number;
dimensionScores: Record<string, number>;
rubric: PageType | 'default';
}
// ---------------------------------------------------------------------------
// Shared dimension helpers
// ---------------------------------------------------------------------------
function hasTimelineEntries(page: Page): number {
const tl = (page.timeline ?? '').trim();
if (tl.length === 0) return 0;
const bulletCount = (tl.match(/^\s*-\s/gm) ?? []).length;
return bulletCount > 0 ? 1 : 0.5;
}
function hasCitations(page: Page): number {
const body = page.compiled_truth ?? '';
const count = (body.match(/\[Source:[^\]]*\]/g) ?? []).length;
const urlLinkCount = (body.match(/\]\(https?:\/\/[^)]+\)/g) ?? []).length;
const total = count + urlLinkCount;
if (total === 0) return 0;
if (total >= 3) return 1;
return total / 3;
}
function hasSourceUrls(page: Page): number {
const body = page.compiled_truth ?? '';
const urls = (body.match(/https?:\/\/[^\s)\]]+/g) ?? []).length;
if (urls === 0) return 0;
if (urls >= 2) return 1;
return 0.6;
}
function hasFrontmatterField(page: Page, keys: string[]): number {
const fm = page.frontmatter ?? {};
for (const k of keys) {
const v = fm[k];
if (typeof v === 'string' && v.trim().length > 0) return 1;
if (typeof v === 'number' && Number.isFinite(v)) return 1;
if (Array.isArray(v) && v.length > 0) return 1;
}
return 0;
}
function hasBacklinkHint(page: Page): number {
// Crude: count wikilinks out; a page that links out is much more likely
// to have inbound references. Real backlink count requires an engine call
// (we stay pure here). If the rubric needs engine-backed signal, a later
// variant of scorer can inject backlinkCount.
const body = page.compiled_truth ?? '';
const wikiLinks = (body.match(/\[[^\]]+\]\([^)]*\.md\)/g) ?? []).length;
if (wikiLinks === 0) return 0;
if (wikiLinks >= 3) return 1;
return wikiLinks / 3;
}
function recencyScore(page: Page): number {
// Prefer frontmatter.last_verified → page.updated_at → 0.
const fm = page.frontmatter ?? {};
const verified = typeof fm.last_verified === 'string' ? parseDate(fm.last_verified) : null;
const updated = page.updated_at instanceof Date ? page.updated_at : null;
const reference = verified ?? updated;
if (!reference) return 0;
const ageDays = Math.floor((Date.now() - reference.getTime()) / (1000 * 60 * 60 * 24));
if (ageDays <= 90) return 1;
if (ageDays <= 180) return 0.7;
if (ageDays <= 365) return 0.4;
return 0.1;
}
function nonRedundancy(page: Page): number {
const body = page.compiled_truth ?? '';
if (body.length < 200) return 0.5;
const lines = body.split('\n').map(l => l.trim()).filter(l => l.length > 0);
if (lines.length === 0) return 0;
const unique = new Set(lines);
return unique.size / lines.length;
}
function hasTitle(page: Page): number {
return page.title && page.title.trim().length > 0 ? 1 : 0;
}
function hasBody(page: Page): number {
return (page.compiled_truth ?? '').trim().length > 0 ? 1 : 0;
}
function parseDate(s: string): Date | null {
const d = new Date(s);
return Number.isNaN(d.getTime()) ? null : d;
}
// ---------------------------------------------------------------------------
// Seven core rubrics + default
// ---------------------------------------------------------------------------
export const personRubric: Rubric = {
entityType: 'person',
dimensions: [
{ name: 'has_role_and_company', weight: 0.20, check: p => hasFrontmatterField(p, ['role', 'title', 'company']) },
{ name: 'has_source_urls', weight: 0.20, check: hasSourceUrls },
{ name: 'has_timeline_entries', weight: 0.15, check: hasTimelineEntries },
{ name: 'has_citations', weight: 0.15, check: hasCitations },
{ name: 'has_backlinks', weight: 0.10, check: hasBacklinkHint },
{ name: 'recency_score', weight: 0.10, check: recencyScore },
{ name: 'non_redundancy', weight: 0.10, check: nonRedundancy },
],
};
export const companyRubric: Rubric = {
entityType: 'company',
dimensions: [
{ name: 'has_description', weight: 0.20, check: hasBody },
{ name: 'has_founders', weight: 0.15, check: p => hasFrontmatterField(p, ['founders', 'founder', 'ceo']) },
{ name: 'has_funding', weight: 0.15, check: p => hasFrontmatterField(p, ['funding', 'raised', 'round', 'investors']) },
{ name: 'has_source_urls', weight: 0.15, check: hasSourceUrls },
{ name: 'has_citations', weight: 0.15, check: hasCitations },
{ name: 'has_employees_or_investors', weight: 0.10, check: hasBacklinkHint },
{ name: 'recency_score', weight: 0.10, check: recencyScore },
],
};
export const projectRubric: Rubric = {
entityType: 'project',
dimensions: [
{ name: 'has_description', weight: 0.25, check: hasBody },
{ name: 'has_owners', weight: 0.20, check: p => hasFrontmatterField(p, ['owner', 'owners', 'lead']) },
{ name: 'has_timeline_entries', weight: 0.15, check: hasTimelineEntries },
{ name: 'has_citations', weight: 0.15, check: hasCitations },
{ name: 'has_status', weight: 0.15, check: p => hasFrontmatterField(p, ['status', 'state', 'phase']) },
{ name: 'recency_score', weight: 0.10, check: recencyScore },
],
};
export const dealRubric: Rubric = {
entityType: 'deal',
dimensions: [
{ name: 'has_company', weight: 0.25, check: p => hasFrontmatterField(p, ['company', 'target']) },
{ name: 'has_terms', weight: 0.25, check: p => hasFrontmatterField(p, ['terms', 'amount', 'valuation', 'round']) },
{ name: 'has_date', weight: 0.15, check: p => hasFrontmatterField(p, ['date', 'closed', 'announced']) },
{ name: 'has_source_urls', weight: 0.15, check: hasSourceUrls },
{ name: 'has_citations', weight: 0.20, check: hasCitations },
],
};
export const conceptRubric: Rubric = {
entityType: 'concept',
dimensions: [
{ name: 'has_definition', weight: 0.35, check: hasBody },
{ name: 'has_citations', weight: 0.30, check: hasCitations },
{ name: 'has_examples', weight: 0.20, check: p => countListItems(p.compiled_truth) >= 2 ? 1 : countListItems(p.compiled_truth) / 2 },
{ name: 'has_related', weight: 0.15, check: hasBacklinkHint },
],
};
export const sourceRubric: Rubric = {
entityType: 'source',
dimensions: [
{ name: 'has_url', weight: 0.35, check: p => hasFrontmatterField(p, ['url', 'link', 'source_url']) },
{ name: 'has_author', weight: 0.20, check: p => hasFrontmatterField(p, ['author', 'authors', 'by']) },
{ name: 'has_date', weight: 0.20, check: p => hasFrontmatterField(p, ['date', 'published', 'year']) },
{ name: 'has_summary', weight: 0.25, check: hasBody },
],
};
export const mediaRubric: Rubric = {
entityType: 'media',
dimensions: [
{ name: 'has_type', weight: 0.20, check: p => hasFrontmatterField(p, ['media_type', 'type', 'format']) },
{ name: 'has_url', weight: 0.25, check: p => hasFrontmatterField(p, ['url', 'link']) },
{ name: 'has_title', weight: 0.20, check: hasTitle },
{ name: 'has_date', weight: 0.15, check: p => hasFrontmatterField(p, ['date', 'published', 'recorded']) },
{ name: 'has_transcript_or_summary', weight: 0.20, check: hasBody },
],
};
export const defaultRubric: Rubric = {
entityType: 'default',
dimensions: [
{ name: 'has_title', weight: 0.30, check: hasTitle },
{ name: 'has_content', weight: 0.30, check: hasBody },
{ name: 'has_source_urls', weight: 0.20, check: hasSourceUrls },
{ name: 'has_citations', weight: 0.20, check: hasCitations },
],
};
const RUBRICS_BY_TYPE = new Map<PageType | 'default', Rubric>([
['person', personRubric],
['company', companyRubric],
['project', projectRubric],
['deal', dealRubric],
['concept', conceptRubric],
['source', sourceRubric],
['media', mediaRubric],
['default', defaultRubric],
]);
// Validate rubric weights at module load (catches copy-paste bugs).
for (const [type, rubric] of RUBRICS_BY_TYPE) {
const sum = rubric.dimensions.reduce((acc, d) => acc + d.weight, 0);
if (Math.abs(sum - 1.0) > 1e-6) {
throw new Error(`Rubric for ${type} has dimension weights summing to ${sum}, not 1.0`);
}
}
// ---------------------------------------------------------------------------
// Scorer
// ---------------------------------------------------------------------------
export function scorePage(page: Page): CompletenessScore {
const rubric = RUBRICS_BY_TYPE.get(page.type as PageType) ?? defaultRubric;
const dimensionScores: Record<string, number> = {};
let total = 0;
for (const d of rubric.dimensions) {
const raw = clamp(d.check(page), 0, 1);
dimensionScores[d.name] = raw;
total += raw * d.weight;
}
return {
slug: page.slug,
entityType: page.type,
score: Math.round(total * 1000) / 1000,
dimensionScores,
rubric: rubric.entityType,
};
}
export function getRubric(type: PageType | string): Rubric {
const r = RUBRICS_BY_TYPE.get(type as PageType);
return r ?? defaultRubric;
}
function clamp(v: number, lo: number, hi: number): number {
if (!Number.isFinite(v)) return lo;
return Math.max(lo, Math.min(hi, v));
}
function countListItems(body: string): number {
return (body.match(/^\s*[-*]\s/gm) ?? []).length;
}
+43 -4
View File
@@ -48,6 +48,26 @@ export interface TestCase {
const LOG_DIR = join(homedir(), '.gbrain', 'fail-improve');
const MAX_ENTRIES = 1000;
// ---------------------------------------------------------------------------
// AbortSignal helpers
// ---------------------------------------------------------------------------
/**
* Construct a DOM-style AbortError. Matches what fetch() throws on
* AbortController.abort(), so downstream callers that already branch on
* `err.name === 'AbortError'` work without change.
*/
function makeAbortError(where: string): Error {
const err = new Error(`Aborted at ${where}`);
err.name = 'AbortError';
return err;
}
function isAbortError(err: unknown): boolean {
return !!err && typeof err === 'object' &&
('name' in err && (err as { name: string }).name === 'AbortError');
}
// ---------------------------------------------------------------------------
// Core class
// ---------------------------------------------------------------------------
@@ -62,28 +82,47 @@ export class FailImproveLoop {
/**
* Try deterministic first, fall back to LLM, log mismatches.
* When both fail, throws the LLM error and logs both failures.
*
* Optional `opts.signal` threads an AbortSignal through the flow:
* - Checked before the deterministic call and again before the LLM call.
* - Forwarded to both callbacks as an optional second arg. Existing
* callbacks that take only `(input: string)` are structurally compatible
* and ignore the extra arg (TypeScript widens on call).
* - When aborted, throws an Error with name='AbortError' (standard Web
* AbortController semantics). Does not write a failure log entry for
* aborted runs since they're not informative.
*/
async execute<T>(
operation: string,
input: string,
deterministicFn: (input: string) => T | null,
llmFallbackFn: (input: string) => Promise<T>,
deterministicFn: (input: string, signal?: AbortSignal) => T | null,
llmFallbackFn: (input: string, signal?: AbortSignal) => Promise<T>,
opts?: { signal?: AbortSignal },
): Promise<T> {
// Pre-flight abort check
if (opts?.signal?.aborted) throw makeAbortError('fail-improve:before-start');
// Track call
this.incrementCallCount(operation, 'total');
// Try deterministic first
const deterResult = deterministicFn(input);
const deterResult = deterministicFn(input, opts?.signal);
if (deterResult !== null && deterResult !== undefined) {
this.incrementCallCount(operation, 'deterministic');
return deterResult;
}
// Abort check between deterministic miss and LLM call
if (opts?.signal?.aborted) throw makeAbortError('fail-improve:before-fallback');
// Deterministic failed, try LLM
let llmResult: T;
try {
llmResult = await llmFallbackFn(input);
llmResult = await llmFallbackFn(input, opts?.signal);
} catch (llmError: any) {
// Abort propagates unlogged — not a useful failure record
if (isAbortError(llmError)) throw llmError;
// Both failed — log both, throw LLM error
this.logFailure({
timestamp: new Date().toISOString(),
+392 -31
View File
@@ -27,16 +27,41 @@ export interface EntityRef {
}
/**
* Match `[Name](path)` markdown links pointing to `people/` or `companies/`
* (and other entity directories). Accepts both filesystem-relative format
* (`[Name](../people/slug.md)`) AND engine-slug format (`[Name](people/slug)`).
* Directory prefix whitelist. These are the top-level slug dirs the extractor
* recognizes as entity references. Upstream canonical + our extensions:
* - Gbrain canonical: people, companies, meetings, concepts, deal, civic, project, source, media, yc, projects
* - Our domain extensions: tech, finance, personal, openclaw (domain-organized wikis)
* - Our entity prefix: entities (we kept some legacy entities/projects/ pages)
*/
const DIR_PATTERN = '(?:people|companies|meetings|concepts|deal|civic|project|projects|source|media|yc|tech|finance|personal|openclaw|entities)';
/**
* Match `[Name](path)` markdown links pointing to entity directories.
* Accepts both filesystem-relative format (`[Name](../people/slug.md)`)
* AND engine-slug format (`[Name](people/slug)`).
*
* Captures: name, dir (people/companies/...), slug.
* Captures: name, slug (dir/name, possibly deeper).
*
* The regex permits an optional `../` prefix (any number) and an optional
* `.md` suffix so the same function works for both filesystem and DB content.
*/
const ENTITY_REF_RE = /\[([^\]]+)\]\((?:\.\.\/)*((?:people|companies|meetings|concepts|deal|civic|project|source|media|yc)\/([^)\s]+?))(?:\.md)?\)/g;
const ENTITY_REF_RE = new RegExp(
`\\[([^\\]]+)\\]\\((?:\\.\\.\\/)*(${DIR_PATTERN}\\/[^)\\s]+?)(?:\\.md)?\\)`,
'g',
);
/**
* Match Obsidian-style `[[path]]` or `[[path|Display Text]]` wikilinks.
* Captures: slug (dir/...), displayName (optional).
*
* Same dir whitelist as ENTITY_REF_RE. Strips trailing `.md`, strips section
* anchors (`#heading`), skips external URLs. Wiki KBs use this format almost
* exclusively so missing it leaves the graph empty.
*/
const WIKILINK_RE = new RegExp(
`\\[\\[(${DIR_PATTERN}\\/[^|\\]#]+?)(?:#[^|\\]]*?)?(?:\\|([^\\]]+?))?\\]\\]`,
'g',
);
/**
* Strip fenced code blocks (```...```) and inline code (`...`) from markdown,
@@ -84,28 +109,77 @@ function stripCodeBlocks(content: string): string {
export function extractEntityRefs(content: string): EntityRef[] {
const stripped = stripCodeBlocks(content);
const refs: EntityRef[] = [];
let m: RegExpExecArray | null;
// Fresh regex per call (g-flag state is per-instance).
const re = new RegExp(ENTITY_REF_RE.source, ENTITY_REF_RE.flags);
while ((m = re.exec(stripped)) !== null) {
const name = m[1];
const fullPath = m[2];
const slug = fullPath; // dir/slug
let match: RegExpExecArray | null;
// 1. Markdown links: [Name](path)
const mdPattern = new RegExp(ENTITY_REF_RE.source, ENTITY_REF_RE.flags);
while ((match = mdPattern.exec(stripped)) !== null) {
const name = match[1];
const fullPath = match[2];
const slug = fullPath;
const dir = fullPath.split('/')[0];
refs.push({ name, slug, dir });
}
// 2. Obsidian wikilinks: [[path]] or [[path|Display Text]]
const wikiPattern = new RegExp(WIKILINK_RE.source, WIKILINK_RE.flags);
while ((match = wikiPattern.exec(stripped)) !== null) {
let slug = match[1].trim();
if (!slug) continue;
if (slug.includes('://')) continue;
if (slug.endsWith('.md')) slug = slug.slice(0, -3);
const displayName = (match[2] || slug).trim();
const dir = slug.split('/')[0];
refs.push({ name: displayName, slug, dir });
}
return refs;
}
// ─── Link candidates (richer than EntityRef) ────────────────────
export interface LinkCandidate {
/**
* Source page slug for the edge. When omitted, callers default to
* "the page being written" (operations.ts runAutoLink) or "the page
* currently being processed" (extract.ts). Explicitly set when
* frontmatter emits an incoming edge — e.g. a company page's
* `key_people: [pedro-franceschi]` produces a candidate whose
* fromSlug is `people/pedro-franceschi`, not the company.
*/
fromSlug?: string;
/** Target page slug (no .md, no ../). */
targetSlug: string;
/** Inferred relationship type. */
linkType: string;
/** Surrounding text (up to ~80 chars) used for inference + storage. */
context: string;
/**
* Provenance (v0.13+). Defaults to 'markdown' on older call sites;
* frontmatter-derived candidates set 'frontmatter'; user-created edges
* via explicit API pass 'manual'.
*/
linkSource?: string;
/**
* Origin-page slug. Only populated for link_source='frontmatter' so
* reconciliation can scope cleanups to edges THIS page's frontmatter
* created (never touching edges other pages authored).
*/
originSlug?: string;
/** Frontmatter field name (e.g. 'key_people'), for debug + unresolved report. */
originField?: string;
}
/**
* Result of extractPageLinks. `candidates` includes markdown refs + bare
* slug refs + frontmatter-derived edges (v0.13). `unresolved` lists
* frontmatter names that did not resolve to any page — surfaced in the
* put_page auto_links response and the extract summary so users know
* where the graph has holes.
*/
export interface PageLinksResult {
candidates: LinkCandidate[];
unresolved: UnresolvedFrontmatterRef[];
}
/**
@@ -114,16 +188,24 @@ export interface LinkCandidate {
* Sources:
* 1. Markdown entity refs in compiled_truth + timeline (extractEntityRefs).
* 2. Bare slug references in text (people/slug, companies/slug).
* 3. Frontmatter `source:` field (creates a 'source' link).
* 3. Frontmatter fields → typed graph edges (v0.13: company, investors,
* attendees, key_people, etc.). See FRONTMATTER_LINK_MAP.
*
* Within-page dedup: multiple mentions of the same (targetSlug, linkType)
* collapse to one candidate. The first occurrence's context wins.
* ASYNC (v0.13): frontmatter extraction resolves display names to slugs
* via the supplied resolver, which may hit the DB. Pre-v0.13 callers
* that don't care about frontmatter can pass a resolver that always
* returns null; only markdown/bare-slug candidates are emitted.
*
* Within-page dedup: multiple mentions of the same (fromSlug, targetSlug,
* linkType) tuple collapse to one candidate. First occurrence wins.
*/
export function extractPageLinks(
export async function extractPageLinks(
slug: string,
content: string,
frontmatter: Record<string, unknown>,
pageType: PageType,
): LinkCandidate[] {
resolver: SlugResolver,
): Promise<PageLinksResult> {
const candidates: LinkCandidate[] = [];
// 1. Markdown entity refs.
@@ -138,6 +220,7 @@ export function extractPageLinks(
targetSlug: ref.slug,
linkType: inferLinkType(pageType, context, content, ref.slug),
context,
linkSource: 'markdown',
});
}
@@ -145,7 +228,10 @@ export function extractPageLinks(
// Limited to the same entity directories ENTITY_REF_RE covers.
// Code blocks are stripped first — slugs in code samples are not real refs.
const strippedContent = stripCodeBlocks(content);
const bareRe = /\b((?:people|companies|meetings|concepts|deal|civic|project|source|media|yc)\/[a-z0-9][a-z0-9-]*)\b/g;
const bareRe = new RegExp(
`\\b(${DIR_PATTERN}\\/[a-z0-9][a-z0-9/-]*[a-z0-9])\\b`,
'g',
);
let m: RegExpExecArray | null;
while ((m = bareRe.exec(strippedContent)) !== null) {
// Skip matches that are part of a markdown link (already handled above).
@@ -156,30 +242,26 @@ export function extractPageLinks(
targetSlug: m[1],
linkType: inferLinkType(pageType, context, content, m[1]),
context,
linkSource: 'markdown',
});
}
// 3. Frontmatter source field.
const source = frontmatter.source;
if (typeof source === 'string' && source.length > 0 && /^[a-z][a-z0-9-]*\/[a-z0-9][a-z0-9-]*$/.test(source)) {
candidates.push({
targetSlug: source,
linkType: 'source',
context: `frontmatter source: ${source}`,
});
}
// 3. Frontmatter-derived edges (v0.13). Includes the legacy `source:`
// field along with the full field map.
const fm = await extractFrontmatterLinks(slug, pageType, frontmatter, resolver);
candidates.push(...fm.candidates);
// Within-page dedup: same (targetSlug, linkType) collapses to one entry.
// First occurrence wins (preserves the most natural/earliest context).
// Within-page dedup: same (fromSlug, targetSlug, linkType, linkSource)
// collapses to one entry. First occurrence wins.
const seen = new Set<string>();
const result: LinkCandidate[] = [];
for (const c of candidates) {
const key = `${c.targetSlug}\u0000${c.linkType}`;
const key = `${c.fromSlug ?? ''}\u0000${c.targetSlug}\u0000${c.linkType}\u0000${c.linkSource ?? ''}`;
if (seen.has(key)) continue;
seen.add(key);
result.push(c);
}
return result;
return { candidates: result, unresolved: fm.unresolved };
}
/** Excerpt a window of `width` chars around `idx`, collapsed to one line. */
@@ -314,6 +396,272 @@ export function inferLinkType(pageType: PageType, context: string, globalContext
return 'mentions';
}
// ─── Frontmatter link extraction (v0.13) ────────────────────────
//
// YAML frontmatter on entity pages carries rich relationship data:
//
// company: "Stripe" # person page
// companies: [Stripe, Plaid] # person page (alias of company)
// key_people: [Patrick Collison, John] # company page (incoming works_at)
// investors: [{name: Sequoia}, Benchmark] # deal page (incoming invested_in)
// attendees: [Pedro, Garry] # meeting page (incoming attended)
//
// Each maps to a typed graph edge. The mapping lives here (one source of
// truth) so the three entry points — operations.ts auto-link, extract.ts
// fs source, extract.ts db source — emit identical edges for the same
// frontmatter. This is the point of the v0.13 rewrite.
//
// DIRECTION: "incoming" means the page being written is the TO side;
// the FROM side is the resolved frontmatter value. E.g. `key_people:
// [Pedro]` on company/stripe emits `people/pedro -> companies/stripe
// type=works_at`, preserving subject-of-verb semantics for graph reads.
//
// MULTI-DIR HINTS: investors can be companies, funds, or people. The
// resolver tries each hint in order and takes the first match.
export interface FrontmatterFieldMapping {
/** Field name(s). Multiple entries are aliases (e.g. company + companies). */
fields: string[];
/**
* Only applies when page.type matches. Omitted = any page type. String
* (not PageType) because some page types like 'meeting' exist in the
* pages table without being in the TypeScript PageType enum.
*/
pageType?: string;
/** Edge link_type. */
type: string;
/** 'outgoing' = page→target. 'incoming' = target→page (subject of verb = from). */
direction: 'outgoing' | 'incoming';
/**
* Target directory hints for slug resolution. Single string or ordered
* array; resolver tries each. E.g. investors → ['companies', 'funds', 'people'].
*/
dirHint: string | string[];
}
/**
* Canonical field → (type, direction, dir-hint) map. Consulted by
* extractFrontmatterLinks for every YAML field on every written page.
*
* NOT normalization: kept as a flat array so duplicate field names with
* different pageType filters coexist cleanly (vs an object-literal which
* would last-write-wins on key collision).
*/
export const FRONTMATTER_LINK_MAP: FrontmatterFieldMapping[] = [
// Person pages → companies
{ fields: ['company', 'companies'], pageType: 'person', type: 'works_at', direction: 'outgoing', dirHint: 'companies' },
{ fields: ['founded'], pageType: 'person', type: 'founded', direction: 'outgoing', dirHint: 'companies' },
// Company pages (incoming relationships — subject of the verb lives elsewhere)
{ fields: ['key_people'], pageType: 'company', type: 'works_at', direction: 'incoming', dirHint: 'people' },
{ fields: ['partner'], pageType: 'company', type: 'yc_partner', direction: 'incoming', dirHint: 'people' },
{ fields: ['investors'], pageType: 'company', type: 'invested_in', direction: 'incoming',
dirHint: ['companies', 'funds', 'people'] },
// Deal pages (all incoming — deals are the object)
{ fields: ['investors'], pageType: 'deal', type: 'invested_in', direction: 'incoming',
dirHint: ['companies', 'funds', 'people'] },
{ fields: ['lead'], pageType: 'deal', type: 'led_round', direction: 'incoming',
dirHint: ['companies', 'funds', 'people'] },
// Meeting pages
{ fields: ['attendees'], pageType: 'meeting', type: 'attended', direction: 'incoming', dirHint: 'people' },
// Any page type
{ fields: ['sources'], type: 'discussed_in', direction: 'incoming', dirHint: ['source', 'media'] },
{ fields: ['source'], type: 'source', direction: 'outgoing', dirHint: '' /* already slug-shaped */ },
{ fields: ['related', 'see_also'], type: 'related_to', direction: 'outgoing', dirHint: '' },
];
// ─── Slug resolver ──────────────────────────────────────────────
export interface SlugResolver {
/**
* Resolve a display name to a canonical slug.
* Returns null when no match meets confidence threshold — callers should
* skip (not write a dead link) and the unresolved name goes into the
* extract/put_page summary so the user can see the gap.
*/
resolve(name: string, dirHint?: string | string[]): Promise<string | null>;
}
/**
* Create a resolver scoped to a single extract run or single put_page call.
*
* mode: 'batch' (migration / gbrain extract) — pg_trgm only, NO search
* fallback. On a 46K-page brain this avoids N-thousand OpenAI embedding
* calls + Anthropic Haiku expansion calls (see operations-query-hidden-haiku
* learning) and keeps the backfill deterministic + under a wall-clock budget.
*
* mode: 'live' (put_page auto-link) — can afford the (rare, bounded) search
* fallback for names that don't fuzzy-match. Still passes expand=false to
* dodge Haiku.
*
* cache: per-resolver instance. Same name → same slug lookup every call.
* Callers never need to dedupe names themselves.
*/
export function makeResolver(
engine: BrainEngine,
opts: { mode: 'batch' | 'live' } = { mode: 'live' },
): SlugResolver {
const cache = new Map<string, string | null>();
const norm = (s: string) => s.toLowerCase().replace(/[^a-z0-9\s-]/g, '').trim().replace(/\s+/g, '-');
return {
async resolve(name: string, dirHint?: string | string[]): Promise<string | null> {
if (!name || typeof name !== 'string') return null;
const trimmed = name.trim();
if (!trimmed) return null;
const cacheKey = `${trimmed}\u0000${Array.isArray(dirHint) ? dirHint.join(',') : (dirHint || '')}`;
if (cache.has(cacheKey)) return cache.get(cacheKey)!;
const hints = Array.isArray(dirHint) ? dirHint : (dirHint ? [dirHint] : []);
// Step 1: already a slug? (dir/name shape, lowercase, hyphenated)
if (/^[a-z][a-z0-9-]*\/[a-z0-9][a-z0-9-]*$/.test(trimmed)) {
const page = await engine.getPage(trimmed);
if (page) {
cache.set(cacheKey, trimmed);
return trimmed;
}
}
// Step 2: dir-hint + slugify → exact getPage
const slugified = norm(trimmed);
for (const hint of hints) {
if (!hint) continue;
const candidate = `${hint}/${slugified}`;
const page = await engine.getPage(candidate);
if (page) {
cache.set(cacheKey, candidate);
return candidate;
}
}
// Step 3: pg_trgm fuzzy title match — both modes. Tries each hint in
// order; first hint with a ≥0.55 similarity match wins. If no hints,
// try the whole pages table.
const searchHints = hints.length > 0 ? hints : [undefined];
for (const hint of searchHints) {
const match = await engine.findByTitleFuzzy(trimmed, hint, 0.55);
if (match) {
cache.set(cacheKey, match.slug);
return match.slug;
}
}
// Step 4: live-mode ONLY — fall back to hybrid search. expand: false
// is MANDATORY (see operations-query-hidden-haiku learning). Batch
// mode skips this step entirely to keep migration deterministic.
if (opts.mode === 'live') {
try {
const results = await engine.searchKeyword(trimmed, { limit: 3 });
if (results.length > 0 && results[0].score >= 0.8) {
// Filter by dir hint if provided.
const top = hints.length > 0
? results.find(r => hints.some(h => r.slug.startsWith(`${h}/`)))
: results[0];
if (top) {
cache.set(cacheKey, top.slug);
return top.slug;
}
}
} catch { /* search errors are non-fatal; fall through to null */ }
}
// Null = unresolvable. Caller records for the unresolved report.
cache.set(cacheKey, null);
return null;
},
};
}
// ─── Frontmatter extractor ──────────────────────────────────────
export interface UnresolvedFrontmatterRef {
/** The frontmatter field name. */
field: string;
/** The name that did not resolve. */
name: string;
}
export interface FrontmatterExtractResult {
candidates: LinkCandidate[];
unresolved: UnresolvedFrontmatterRef[];
}
/**
* Extract typed graph edges from YAML frontmatter. Async because the
* resolver may need to query the DB for fuzzy matches.
*
* Arrays of strings: each entry resolved independently.
* Arrays of objects: uses the `name` or `slug` property (codex tension 6.3).
* Non-string / non-object entries: silently skipped (log-only).
*/
export async function extractFrontmatterLinks(
slug: string,
pageType: PageType,
frontmatter: Record<string, unknown>,
resolver: SlugResolver,
): Promise<FrontmatterExtractResult> {
const candidates: LinkCandidate[] = [];
const unresolved: UnresolvedFrontmatterRef[] = [];
for (const mapping of FRONTMATTER_LINK_MAP) {
if (mapping.pageType && mapping.pageType !== pageType) continue;
for (const field of mapping.fields) {
const value = frontmatter[field];
if (value == null) continue;
const entries = Array.isArray(value) ? value : [value];
for (const entry of entries) {
// Extract the name to resolve. Strings pass through; objects use
// the `name` / `slug` / `title` field in that preference order.
let name: string | null = null;
let contextExtra = '';
if (typeof entry === 'string') {
name = entry;
} else if (entry && typeof entry === 'object') {
const obj = entry as Record<string, unknown>;
const n = obj.name ?? obj.slug ?? obj.title;
if (typeof n === 'string') {
name = n;
// Carry interesting object fields (role, title) into the context.
const extras: string[] = [];
if (typeof obj.role === 'string') extras.push(obj.role);
if (typeof obj.title === 'string' && obj.title !== n) extras.push(obj.title);
if (extras.length > 0) contextExtra = ` (${extras.join(', ')})`;
}
}
if (!name) continue; // skip numbers, nulls, malformed objects
const resolved = await resolver.resolve(name, mapping.dirHint);
if (!resolved) {
unresolved.push({ field, name });
continue;
}
// Outgoing: page → resolved. Incoming: resolved → page.
const fromSlug = mapping.direction === 'outgoing' ? slug : resolved;
const toSlug = mapping.direction === 'outgoing' ? resolved : slug;
// Context enrichment (review Finding 7): readable in backlink panels
// and search snippets instead of bare `frontmatter.key_people`.
const context = `frontmatter.${field}: ${name}${contextExtra}`;
candidates.push({
fromSlug,
targetSlug: toSlug,
linkType: mapping.type,
context,
linkSource: 'frontmatter',
originSlug: slug, // the page whose frontmatter created this edge
originField: field,
});
}
}
}
return { candidates, unresolved };
}
// ─── Timeline parsing ───────────────────────────────────────────
export interface TimelineCandidate {
@@ -411,3 +759,16 @@ export async function isAutoLinkEnabled(engine: BrainEngine): Promise<boolean> {
const normalized = val.trim().toLowerCase();
return !['false', '0', 'no', 'off'].includes(normalized);
}
/**
* Read the auto_timeline config flag. Defaults to TRUE (on by default).
* Same truthiness rules as isAutoLinkEnabled. Controls whether put_page
* parses timeline entries from freshly-written content and inserts them
* via addTimelineEntriesBatch.
*/
export async function isAutoTimelineEnabled(engine: BrainEngine): Promise<boolean> {
const val = await engine.getConfig('auto_timeline');
if (val == null) return true;
const normalized = val.trim().toLowerCase();
return !['false', '0', 'no', 'off'].includes(normalized);
}
+121
View File
@@ -284,6 +284,127 @@ export const MIGRATIONS: Migration[] = [
DROP FUNCTION IF EXISTS update_page_search_vector_from_timeline();
`,
},
{
version: 11,
name: 'links_provenance_columns',
// v0.13: adds provenance columns so frontmatter-derived edges can be
// distinguished from markdown/manual edges. Reconciliation on put_page
// scopes by (link_source='frontmatter' AND origin_page_id = written_page)
// so edges from other pages never get mis-deleted.
//
// Unique constraint swaps: old (from, to, type) blocks coexistence of
// markdown + frontmatter + manual edges with the same tuple. New tuple
// includes link_source + origin_page_id.
//
// Existing rows keep link_source IS NULL (legacy marker) — they are NOT
// backfilled to 'markdown' because existing rows may be manual/imported
// /inferred; mislabeling them as markdown would corrupt provenance.
//
// Idempotent via IF NOT EXISTS / DROP IF EXISTS.
sql: `
-- Postgres version gate: UNIQUE NULLS NOT DISTINCT requires PG15+.
-- PGLite ships PG17.5, current Supabase is PG15+. Old Supabase projects
-- on PG14 hit an explicit error rather than half-applying (drop old
-- constraint but fail to add new one → brain loses uniqueness guarantee).
DO $$ BEGIN
IF current_setting('server_version_num')::int < 150000 THEN
RAISE EXCEPTION
'v0.13 migration requires Postgres 15+. Current: %. '
'Upgrade your Postgres (Supabase: migrate project to a newer PG major). '
'This migration intentionally stops before touching the schema to preserve data integrity.',
current_setting('server_version');
END IF;
END $$;
ALTER TABLE links ADD COLUMN IF NOT EXISTS link_source TEXT;
DO $$ BEGIN
IF NOT EXISTS (
SELECT 1 FROM pg_constraint WHERE conname = 'links_link_source_check'
) THEN
ALTER TABLE links ADD CONSTRAINT links_link_source_check
CHECK (link_source IS NULL OR link_source IN ('markdown', 'frontmatter', 'manual'));
END IF;
END $$;
ALTER TABLE links ADD COLUMN IF NOT EXISTS origin_page_id INTEGER
REFERENCES pages(id) ON DELETE SET NULL;
ALTER TABLE links ADD COLUMN IF NOT EXISTS origin_field TEXT;
-- Backfill NULL link_source → 'markdown' for existing rows. Codex review
-- caught that without this, pre-v0.13 legacy rows coexist with new
-- 'markdown' writes under NULLS NOT DISTINCT (NULL ≠ 'markdown'),
-- causing duplicate edges to accumulate. Treating legacy as markdown
-- is the accurate best-guess: pre-v0.13 auto-link only emitted markdown
-- edges. User-created 'manual' edges are a v0.13+ concept anyway.
UPDATE links SET link_source = 'markdown' WHERE link_source IS NULL;
ALTER TABLE links DROP CONSTRAINT IF EXISTS links_from_to_type_unique;
DO $$ BEGIN
IF NOT EXISTS (
SELECT 1 FROM pg_constraint WHERE conname = 'links_from_to_type_source_origin_unique'
) THEN
ALTER TABLE links ADD CONSTRAINT links_from_to_type_source_origin_unique
UNIQUE NULLS NOT DISTINCT (from_page_id, to_page_id, link_type, link_source, origin_page_id);
END IF;
END $$;
CREATE INDEX IF NOT EXISTS idx_links_source ON links(link_source);
CREATE INDEX IF NOT EXISTS idx_links_origin ON links(origin_page_id);
`,
},
{
version: 12,
name: 'budget_ledger',
// Resolver spend tracker. Primary key {scope, resolver_id, local_date} so
// midnight rollover in the user's TZ naturally creates a new row instead of
// mutating yesterday's. reserved_usd and committed_usd track reservations
// vs actuals so process death between reserve() and commit()/rollback()
// can be cleaned up by TTL scan. status and reserved_at exist for that
// reclaim path. Rollback: DROP TABLE (budget is regenerable from resolver
// call logs; no durable product data lives here).
sql: `
CREATE TABLE IF NOT EXISTS budget_ledger (
scope TEXT NOT NULL,
resolver_id TEXT NOT NULL,
local_date DATE NOT NULL,
reserved_usd NUMERIC(12,4) NOT NULL DEFAULT 0,
committed_usd NUMERIC(12,4) NOT NULL DEFAULT 0,
cap_usd NUMERIC(12,4),
created_at TIMESTAMPTZ NOT NULL DEFAULT now(),
updated_at TIMESTAMPTZ NOT NULL DEFAULT now(),
PRIMARY KEY (scope, resolver_id, local_date)
);
CREATE TABLE IF NOT EXISTS budget_reservations (
reservation_id TEXT PRIMARY KEY,
scope TEXT NOT NULL,
resolver_id TEXT NOT NULL,
local_date DATE NOT NULL,
estimate_usd NUMERIC(12,4) NOT NULL,
reserved_at TIMESTAMPTZ NOT NULL DEFAULT now(),
expires_at TIMESTAMPTZ NOT NULL,
status TEXT NOT NULL DEFAULT 'held'
);
CREATE INDEX IF NOT EXISTS idx_budget_reservations_expires
ON budget_reservations(expires_at) WHERE status = 'held';
`,
},
{
version: 13,
name: 'minion_quiet_hours_stagger',
// Adds quiet-hours gating + deterministic stagger to Minions.
//
// quiet_hours (JSONB): {start, end, tz, policy} — checked at claim
// time by the worker, not at dispatch. A queued job inside its quiet
// window is released back to 'waiting' and claimed again outside the
// window. 'skip' policy drops the event, 'defer' re-queues.
// stagger_key (TEXT): hashed to a minute-slot offset so jobs with the
// same key don't collide when a cron boundary fires. Optional; NULL
// = no stagger. The hash lives in application code (deterministic,
// ensures same key always lands on same slot) so the column is
// just the key.
sql: `
ALTER TABLE minion_jobs ADD COLUMN IF NOT EXISTS quiet_hours JSONB;
ALTER TABLE minion_jobs ADD COLUMN IF NOT EXISTS stagger_key TEXT;
CREATE INDEX IF NOT EXISTS idx_minion_jobs_stagger_key
ON minion_jobs(stagger_key) WHERE stagger_key IS NOT NULL;
`,
},
];
export const LATEST_VERSION = MIGRATIONS.length > 0
+75
View File
@@ -0,0 +1,75 @@
/**
* Shell-job submission audit log (operational trace, NOT forensic insurance).
*
* Writes a JSONL line per shell-job submission to `~/.gbrain/audit/shell-jobs-YYYY-Www.jsonl`
* (ISO week rotation, override via `GBRAIN_AUDIT_DIR`). Best-effort: write failures go
* to stderr and never block submission, which means a disk-full attacker could silently
* disable the trail. CHANGELOG calls this out honestly: it's for debugging "what did
* this cron submit last Tuesday?", not for security-critical forensics.
*
* Never logs `env` values (may contain secrets). Does log `cmd` and `argv` truncated to
* 80 chars for cmd / stored as JSON array for argv — the command text itself can contain
* inline tokens (`curl -H 'Authorization: Bearer ...'`) and the guide explicitly tells
* operators to put secrets in `env:` instead of embedding them in the command line.
*/
import * as fs from 'node:fs';
import * as path from 'node:path';
import * as os from 'node:os';
export interface ShellAuditEvent {
ts: string;
caller: 'cli' | 'mcp';
remote: boolean;
job_id: number;
cwd: string;
cmd_display?: string; // first 80 chars of cmd; may contain inline tokens
argv_display?: string[]; // each arg truncated individually to preserve separation
}
/** Compute `shell-jobs-YYYY-Www.jsonl` using ISO-8601 week numbering.
*
* Year-boundary edge: 2027-01-01 is ISO week 53 of year 2026, so the correct
* filename is `shell-jobs-2026-W53.jsonl`. This matches the ISO week standard
* (week containing the first Thursday of the year is W1; week containing Dec 28
* is always W52 or W53 of that year).
*/
export function computeAuditFilename(now: Date = new Date()): string {
// Copy date and move to nearest Thursday (ISO week anchor).
const d = new Date(Date.UTC(now.getUTCFullYear(), now.getUTCMonth(), now.getUTCDate()));
const dayNum = (d.getUTCDay() + 6) % 7; // Mon=0, Sun=6
d.setUTCDate(d.getUTCDate() - dayNum + 3); // shift to Thursday
const isoYear = d.getUTCFullYear();
const firstThursday = new Date(Date.UTC(isoYear, 0, 4));
const firstThursdayDayNum = (firstThursday.getUTCDay() + 6) % 7;
firstThursday.setUTCDate(firstThursday.getUTCDate() - firstThursdayDayNum + 3);
const weekNum = Math.round((d.getTime() - firstThursday.getTime()) / (7 * 86400000)) + 1;
const ww = String(weekNum).padStart(2, '0');
return `shell-jobs-${isoYear}-W${ww}.jsonl`;
}
/** Resolve the audit dir. Honors `GBRAIN_AUDIT_DIR` for container/sandbox deployments
* where `$HOME` is read-only. Defaults to `~/.gbrain/audit/`. */
export function resolveAuditDir(): string {
const override = process.env.GBRAIN_AUDIT_DIR;
if (override && override.trim().length > 0) return override;
return path.join(os.homedir(), '.gbrain', 'audit');
}
export function logShellSubmission(event: Omit<ShellAuditEvent, 'ts'>): void {
const dir = resolveAuditDir();
const filename = computeAuditFilename();
const fullPath = path.join(dir, filename);
const line = JSON.stringify({ ...event, ts: new Date().toISOString() }) + '\n';
try {
fs.mkdirSync(dir, { recursive: true });
fs.appendFileSync(fullPath, line, { encoding: 'utf8' });
} catch (err) {
// Best-effort: log to stderr and keep going. A disk-full or EACCES attacker
// can silently disable this trail, which is why CHANGELOG calls it an
// operational trace, not forensic insurance.
const msg = err instanceof Error ? err.message : String(err);
process.stderr.write(`[shell-audit] write failed (${msg}); submission continues\n`);
}
}
+311
View File
@@ -0,0 +1,311 @@
/**
* `shell` job handler.
*
* Runs an arbitrary shell command or argv vector as a child process under the
* Minions worker. Purpose: move deterministic cron scripts (API fetch, token
* refresh, scrape + write) off the LLM gateway so they don't consume an Opus
* session each time.
*
* Security (both gates must pass):
* 1. `MinionQueue.add()` rejects name='shell' unless the caller explicitly
* opts in via `trusted.allowProtectedSubmit`. CLI path and the `submit_job`
* operation (when `ctx.remote === false`) set the flag. MCP callers don't.
* 2. This handler only registers when `process.env.GBRAIN_ALLOW_SHELL_JOBS === '1'`.
* Default: off. Without the flag the worker's `registeredNames` excludes
* shell and queued jobs stay in 'waiting'.
*
* Env model (honest): the child process receives a small allowlist (PATH, HOME,
* USER, LANG, TZ, NODE_ENV) merged with caller-supplied `job.data.env`. This
* prevents the accidental `$OPENAI_API_KEY` interpolation footgun. It does NOT
* sandbox filesystem reads — a shell script can `cat ~/.env` or any file the
* worker can read. The operator picks a safe `cwd`; that's the trust boundary.
*
* Shutdown: the handler listens to BOTH `ctx.signal` (timeout/cancel/lock-loss)
* and `ctx.shutdownSignal` (worker process SIGTERM). Either triggers the same
* kill sequence: SIGTERM → 5s grace → SIGKILL. Non-shell handlers ignore
* `shutdownSignal` so deploy restarts don't interrupt them mid-flight.
*/
import { spawn, type ChildProcess } from 'node:child_process';
import { StringDecoder } from 'node:string_decoder';
import * as path from 'node:path';
import type { MinionJobContext } from '../types.ts';
import { UnrecoverableError } from '../types.ts';
/** Environment variables passed through to shell children by default. Callers
* that need additional keys (e.g. a specific API token for a cron) must name
* them explicitly in `job.data.env`. Named keys override this allowlist. */
const SHELL_ENV_ALLOWLIST = ['PATH', 'HOME', 'USER', 'LANG', 'TZ', 'NODE_ENV'] as const;
/** Max bytes retained from stdout/stderr. Output exceeding these caps is
* truncated with a `[truncated N bytes]` marker. UTF-8-safe via StringDecoder. */
const STDOUT_TAIL_MAX_BYTES = 64 * 1024;
const STDERR_TAIL_MAX_BYTES = 16 * 1024;
/** Grace period between SIGTERM and SIGKILL. Well-behaved scripts catch SIGTERM,
* flush state, exit cleanly; non-behaving scripts get reaped. */
const KILL_GRACE_MS = 5000;
export interface ShellJobParams {
/** Shell command. Spawned via `/bin/sh -c cmd`. Exactly one of cmd or argv is required. */
cmd?: string;
/** Argv vector. Spawned directly without a shell. Exactly one of cmd or argv is required. */
argv?: string[];
/** Working directory. REQUIRED, must be an absolute path. The operator chooses
* this; it's the trust boundary for what files the script can read/write. */
cwd: string;
/** Additional env vars to pass to the child. Merged on top of SHELL_ENV_ALLOWLIST. */
env?: Record<string, string>;
}
export interface ShellJobResult {
exit_code: number;
stdout_tail: string;
stderr_tail: string;
duration_ms: number;
pid: number;
}
/** Validate and narrow `job.data` to ShellJobParams. Throws UnrecoverableError
* for misshapen input — validation failures are not retry-worthy. */
function validateParams(data: Record<string, unknown>): ShellJobParams {
const hasCmd = typeof data.cmd === 'string' && data.cmd.length > 0;
const hasArgv = Array.isArray(data.argv) && data.argv.length > 0;
if (hasCmd && hasArgv) {
throw new UnrecoverableError(
'shell: specify exactly one of cmd or argv (see: docs/guides/minions-shell-jobs.md#errors)',
);
}
if (!hasCmd && !hasArgv) {
throw new UnrecoverableError(
'shell: specify exactly one of cmd or argv (see: docs/guides/minions-shell-jobs.md#errors)',
);
}
if (hasArgv) {
const argvOk = (data.argv as unknown[]).every((a) => typeof a === 'string');
if (!argvOk) {
throw new UnrecoverableError(
'shell: argv must be an array of strings (see: docs/guides/minions-shell-jobs.md#errors)',
);
}
}
if (typeof data.cwd !== 'string' || data.cwd.length === 0) {
throw new UnrecoverableError(
'shell: cwd is required and must be an absolute path (see: docs/guides/minions-shell-jobs.md#errors)',
);
}
if (!path.isAbsolute(data.cwd)) {
throw new UnrecoverableError(
'shell: cwd is required and must be an absolute path (see: docs/guides/minions-shell-jobs.md#errors)',
);
}
if (data.env !== undefined) {
if (typeof data.env !== 'object' || data.env === null || Array.isArray(data.env)) {
throw new UnrecoverableError(
'shell: env must be an object of string values (see: docs/guides/minions-shell-jobs.md#errors)',
);
}
for (const v of Object.values(data.env as Record<string, unknown>)) {
if (typeof v !== 'string') {
throw new UnrecoverableError(
'shell: env values must all be strings (see: docs/guides/minions-shell-jobs.md#errors)',
);
}
}
}
return {
cmd: hasCmd ? (data.cmd as string) : undefined,
argv: hasArgv ? (data.argv as string[]) : undefined,
cwd: data.cwd,
env: (data.env as Record<string, string> | undefined),
};
}
/** Build the child process env: SHELL_ENV_ALLOWLIST picked from process.env,
* overlaid with caller-supplied `job.data.env`. Prevents accidental leak of
* OPENAI_API_KEY / DATABASE_URL / etc. into user-authored scripts. */
function buildChildEnv(override: Record<string, string> | undefined): Record<string, string> {
const env: Record<string, string> = {};
for (const key of SHELL_ENV_ALLOWLIST) {
const v = process.env[key];
if (typeof v === 'string') env[key] = v;
}
if (override) {
for (const [k, v] of Object.entries(override)) env[k] = v;
}
return env;
}
/** Bounded-length UTF-8-safe tail buffer. Accumulates bytes via StringDecoder
* so the last `maxBytes` of output is character-safe (no split multibyte chars).
* On truncation, the emitted string is prefixed with `[truncated N bytes]`. */
class TailBuffer {
private decoder = new StringDecoder('utf8');
private body = '';
private bodyBytes = 0;
private truncatedBytes = 0;
constructor(private readonly maxBytes: number) {}
append(chunk: Buffer): void {
const str = this.decoder.write(chunk);
if (str.length === 0) return;
this.body += str;
this.bodyBytes = Buffer.byteLength(this.body, 'utf8');
this.compactIfOver();
}
private compactIfOver(): void {
if (this.bodyBytes <= this.maxBytes) return;
// We need to keep only the trailing maxBytes. Byte-slicing mid-character is
// unsafe; instead, find the highest character offset whose byte length from
// that point is <= maxBytes. Linear-scan from the end over grapheme-safe
// codepoints is good enough at 64KB scales.
const targetByteSize = this.maxBytes;
// Fast path: if body is all ASCII (1 byte per char), byteLength === length.
if (this.body.length === this.bodyBytes) {
const drop = this.bodyBytes - targetByteSize;
this.truncatedBytes += drop;
this.body = this.body.slice(drop);
this.bodyBytes = targetByteSize;
return;
}
// Slow path: find a character boundary that lands just under maxBytes.
// Scan from the end; accumulate bytes per codepoint.
let tailBytes = 0;
let cut = this.body.length;
for (let i = this.body.length - 1; i >= 0; i--) {
const code = this.body.codePointAt(i);
const cpBytes = code === undefined ? 0
: code < 0x80 ? 1
: code < 0x800 ? 2
: code < 0x10000 ? 3
: 4;
if (tailBytes + cpBytes > targetByteSize) break;
tailBytes += cpBytes;
cut = i;
}
const droppedBytes = this.bodyBytes - tailBytes;
this.truncatedBytes += droppedBytes;
this.body = this.body.slice(cut);
this.bodyBytes = tailBytes;
}
done(): string {
const tail = this.decoder.end();
if (tail.length > 0) {
this.body += tail;
this.bodyBytes = Buffer.byteLength(this.body, 'utf8');
this.compactIfOver();
}
if (this.truncatedBytes === 0) return this.body;
return `[truncated ${this.truncatedBytes} bytes]\n${this.body}`;
}
}
/** The shell handler itself. */
export async function shellHandler(ctx: MinionJobContext): Promise<ShellJobResult> {
const params = validateParams(ctx.data);
const env = buildChildEnv(params.env);
const startedAt = Date.now();
let proc: ChildProcess;
try {
if (params.cmd) {
// Absolute /bin/sh — not 'sh' — so a caller-supplied env with a poisoned
// PATH can't redirect to a different shell binary.
proc = spawn('/bin/sh', ['-c', params.cmd], {
cwd: params.cwd,
env,
stdio: ['ignore', 'pipe', 'pipe'],
});
} else {
const argv = params.argv!;
proc = spawn(argv[0], argv.slice(1), {
cwd: params.cwd,
env,
stdio: ['ignore', 'pipe', 'pipe'],
});
}
} catch (err) {
// Spawn-phase failure (e.g. cwd doesn't exist when using '/bin/sh' directly).
// Retryable.
throw err instanceof Error ? err : new Error(String(err));
}
const pid = proc.pid ?? -1;
const stdoutTail = new TailBuffer(STDOUT_TAIL_MAX_BYTES);
const stderrTail = new TailBuffer(STDERR_TAIL_MAX_BYTES);
proc.stdout?.on('data', (c: Buffer) => stdoutTail.append(c));
proc.stderr?.on('data', (c: Buffer) => stderrTail.append(c));
// Wire BOTH signals to the kill sequence. `ctx.signal` fires on timeout /
// cancel / lock-loss; `ctx.shutdownSignal` fires only on worker SIGTERM/SIGINT.
// Shell handler needs both — a deploy restart shouldn't leave children running
// past the 30s worker cleanup race.
let killTimer: ReturnType<typeof setTimeout> | null = null;
let killReason = '';
const onAbort = (label: string) => () => {
if (killTimer !== null) return; // already started
killReason = label;
if (!proc.killed) {
try { proc.kill('SIGTERM'); } catch { /* proc already exited */ }
}
killTimer = setTimeout(() => {
if (!proc.killed) {
try { proc.kill('SIGKILL'); } catch { /* already exited */ }
}
}, KILL_GRACE_MS);
};
const sigAbort = onAbort('signal');
const shutdownAbort = onAbort('shutdown');
ctx.signal.addEventListener('abort', sigAbort);
ctx.shutdownSignal.addEventListener('abort', shutdownAbort);
// Fire immediately if either already aborted before wiring
if (ctx.signal.aborted) sigAbort();
if (ctx.shutdownSignal.aborted) shutdownAbort();
const exitCode: number = await new Promise((resolve, reject) => {
proc.on('error', (err) => {
reject(err);
});
proc.on('exit', (code, signal) => {
// Node maps signal-terminated exits to a 128+N code convention; we use
// whichever is defined.
if (code !== null) resolve(code);
else if (signal === 'SIGTERM') resolve(143);
else if (signal === 'SIGKILL') resolve(137);
else resolve(-1);
});
}).finally(() => {
if (killTimer !== null) clearTimeout(killTimer);
ctx.signal.removeEventListener('abort', sigAbort);
ctx.shutdownSignal.removeEventListener('abort', shutdownAbort);
});
const duration_ms = Date.now() - startedAt;
const stdout_tail = stdoutTail.done();
const stderr_tail = stderrTail.done();
// If we sent SIGTERM/SIGKILL in response to an abort, surface that as the
// error rather than the exit code — clearer for debugging. Worker catch
// handles retry/dead classification.
if (killReason === 'signal' || killReason === 'shutdown') {
const err = new Error(
`aborted: ${killReason === 'shutdown' ? 'shutdown' : (ctx.signal.reason as Error)?.message || 'signal'}`,
);
throw err;
}
if (exitCode !== 0) {
throw new Error(
`exit ${exitCode}: ${stderr_tail.slice(-500)}`,
);
}
return { exit_code: exitCode, stdout_tail, stderr_tail, duration_ms, pid };
}
+20
View File
@@ -0,0 +1,20 @@
/**
* Protected job names — side-effect-free constant module.
*
* Names in this set require an explicit `trusted.allowProtectedSubmit: true` opt-in
* when passed to `MinionQueue.add()`. The CLI path and the `submit_job` operation
* (when `ctx.remote === false`) set the flag; MCP callers never do. Defense-in-depth
* against in-process handlers that programmatically submit a shell child via
* `queue.add('shell', ...)`.
*
* This file must stay pure — no imports from handlers, no filesystem, no env reads.
* Queue core imports it; if this module grew side effects, every queue user would
* pay them at module load.
*/
export const PROTECTED_JOB_NAMES: ReadonlySet<string> = new Set(['shell']);
/** Check a job name against the protected set. Normalizes whitespace first. */
export function isProtectedJobName(name: string): boolean {
return PROTECTED_JOB_NAMES.has(name.trim());
}
+37 -7
View File
@@ -15,6 +15,16 @@ import type {
} from './types.ts';
import { rowToMinionJob, rowToInboxMessage, rowToAttachment } from './types.ts';
import { validateAttachment } from './attachments.ts';
import { isProtectedJobName } from './protected-names.ts';
/** Options for opting into protected-job-name submission. Passed as a separate
* 4th arg to `MinionQueue.add()` (NOT folded into `opts`) so user-spread
* `{...userOpts}` payloads can't accidentally carry the trust flag. */
export interface TrustedSubmitOpts {
/** When true, allow submission of names in PROTECTED_JOB_NAMES (currently 'shell').
* Set only by the CLI path and by `submit_job` when `ctx.remote === false`. */
allowProtectedSubmit?: boolean;
}
const MIGRATION_VERSION = 7;
@@ -55,10 +65,25 @@ export class MinionQueue {
* to 'waiting-children' atomically. Idempotency_key dedups via PG unique
* partial index; same key returns the existing row (no second insert).
*/
async add(name: string, data?: Record<string, unknown>, opts?: Partial<MinionJobInput>): Promise<MinionJob> {
if (!name || name.trim().length === 0) {
async add(
name: string,
data?: Record<string, unknown>,
opts?: Partial<MinionJobInput>,
trusted?: TrustedSubmitOpts,
): Promise<MinionJob> {
// Normalize first so the protected-name check and the insert use the same
// canonical form. Without the trim-before-check, `queue.add(' shell ', ...)`
// would evade the guard and insert a job literally named 'shell'.
const jobName = (name || '').trim();
if (jobName.length === 0) {
throw new Error('Job name cannot be empty');
}
if (isProtectedJobName(jobName) && !trusted?.allowProtectedSubmit) {
throw new Error(
`protected job name '${jobName}' requires CLI or operation-local submitter ` +
`(pass {allowProtectedSubmit: true} as the 4th arg to MinionQueue.add)`,
);
}
await this.ensureSchema();
const childStatus: MinionJobStatus = opts?.delay ? 'delayed' : 'waiting';
@@ -109,21 +134,24 @@ export class MinionQueue {
// 3. Insert child. Use ON CONFLICT for idempotency; if a concurrent submit
// raced past the fast-path SELECT, the unique index catches it here.
// v12 adds quiet_hours + stagger_key passed through from opts.
const insertSql = opts?.idempotency_key
? `INSERT INTO minion_jobs (name, queue, status, priority, data, max_attempts, backoff_type,
backoff_delay, backoff_jitter, delay_until, parent_job_id, on_child_fail,
depth, max_children, timeout_ms, remove_on_complete, remove_on_fail, idempotency_key)
VALUES ($1, $2, $3, $4, $5::jsonb, $6, $7, $8, $9, $10, $11, $12, $13, $14, $15, $16, $17, $18)
depth, max_children, timeout_ms, remove_on_complete, remove_on_fail, idempotency_key,
quiet_hours, stagger_key)
VALUES ($1, $2, $3, $4, $5::jsonb, $6, $7, $8, $9, $10, $11, $12, $13, $14, $15, $16, $17, $18, $19::jsonb, $20)
ON CONFLICT (idempotency_key) WHERE idempotency_key IS NOT NULL DO NOTHING
RETURNING *`
: `INSERT INTO minion_jobs (name, queue, status, priority, data, max_attempts, backoff_type,
backoff_delay, backoff_jitter, delay_until, parent_job_id, on_child_fail,
depth, max_children, timeout_ms, remove_on_complete, remove_on_fail, idempotency_key)
VALUES ($1, $2, $3, $4, $5::jsonb, $6, $7, $8, $9, $10, $11, $12, $13, $14, $15, $16, $17, $18)
depth, max_children, timeout_ms, remove_on_complete, remove_on_fail, idempotency_key,
quiet_hours, stagger_key)
VALUES ($1, $2, $3, $4, $5::jsonb, $6, $7, $8, $9, $10, $11, $12, $13, $14, $15, $16, $17, $18, $19::jsonb, $20)
RETURNING *`;
const params = [
name.trim(),
jobName,
opts?.queue ?? 'default',
childStatus,
opts?.priority ?? 0,
@@ -141,6 +169,8 @@ export class MinionQueue {
opts?.remove_on_complete ?? false,
opts?.remove_on_fail ?? false,
opts?.idempotency_key ?? null,
opts?.quiet_hours ?? null,
opts?.stagger_key ?? null,
];
const inserted = await tx.executeRaw<Record<string, unknown>>(insertSql, params);
+94
View File
@@ -0,0 +1,94 @@
/**
* Quiet-hours gate for Minions — evaluated at claim time, not dispatch.
*
* The codex correction from the CEO review: dispatch-time gating is wrong
* because a job queued outside a quiet window can become claimable during
* the window. Claim-time enforcement is correct: every time the worker
* asks "can I run this now?", we re-check against the current wall clock.
*
* Wall clock comes from Intl.DateTimeFormat with the job's configured tz
* (IANA). The gate returns one of:
* - 'allow' — job can run
* - 'skip' — job is inside a `skip`-policy quiet window; drop it
* - 'defer' — job is inside a `defer`-policy quiet window; re-queue
*
* Pure function: no engine, no side effects. Worker consumes the verdict.
*/
// ---------------------------------------------------------------------------
// Types
// ---------------------------------------------------------------------------
export interface QuietHoursConfig {
/** 0-23; window starts at this local hour inclusive. */
start: number;
/** 0-23; window ends at this local hour exclusive. */
end: number;
/** IANA timezone, e.g. "America/Los_Angeles". */
tz: string;
/** 'skip' drops the event; 'defer' re-queues for later. Default: 'defer'. */
policy?: 'skip' | 'defer';
}
export type QuietHoursVerdict = 'allow' | 'skip' | 'defer';
// ---------------------------------------------------------------------------
// Main API
// ---------------------------------------------------------------------------
/**
* Evaluate a quiet-hours config against a reference wall time. Returns
* 'allow' when `now` is outside the configured window, or 'skip'/'defer'
* according to policy when inside.
*
* Windows may wrap midnight: `{start: 22, end: 7}` means 10pm7am next
* morning. The comparator handles both straight-line and wrap-around
* windows.
*/
export function evaluateQuietHours(
cfg: QuietHoursConfig | null | undefined,
now: Date = new Date(),
): QuietHoursVerdict {
if (!cfg) return 'allow';
if (!isValidConfig(cfg)) return 'allow';
const hour = localHour(now, cfg.tz);
if (hour === null) return 'allow'; // unknown tz → fail-open; safer than hard-blocking every job
const inWindow = cfg.start <= cfg.end
? hour >= cfg.start && hour < cfg.end
: hour >= cfg.start || hour < cfg.end; // wrap-around
if (!inWindow) return 'allow';
return cfg.policy === 'skip' ? 'skip' : 'defer';
}
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
function isValidConfig(cfg: QuietHoursConfig): boolean {
if (!Number.isInteger(cfg.start) || cfg.start < 0 || cfg.start > 23) return false;
if (!Number.isInteger(cfg.end) || cfg.end < 0 || cfg.end > 23) return false;
if (cfg.start === cfg.end) return false; // zero-width window is ambiguous
if (typeof cfg.tz !== 'string' || cfg.tz.length === 0) return false;
return true;
}
/** Return the hour (0-23) of `when` in the given IANA timezone, or null. */
export function localHour(when: Date, tz: string): number | null {
try {
const parts = new Intl.DateTimeFormat('en-US', {
timeZone: tz,
hour12: false,
hour: 'numeric',
}).formatToParts(when);
const hh = parts.find(p => p.type === 'hour')?.value ?? '';
// en-US hour12:false yields '24' for midnight in some Node/Bun versions
const n = parseInt(hh, 10);
if (!Number.isFinite(n)) return null;
return n % 24;
} catch {
return null;
}
}
+35
View File
@@ -0,0 +1,35 @@
/**
* Deterministic stagger slots.
*
* Jobs sharing a stagger_key (e.g., "social-radar", "x-ingest") get a
* minute-offset between 0 and 59 computed from the key itself. Same key →
* same slot, always. Different keys → different slots (collision rate
* proportional to 1/60).
*
* Used by Minions' delayed-promotion path: a cron that fires at minute 0
* can set `delay_until = now() + stagger_offset_seconds` so 10 jobs
* scheduled for the same minute don't actually hit the queue at the same
* moment.
*
* Not a general-purpose hash. FNV-1a is tiny, deterministic across
* runtimes, and enough distinguishing entropy for 60 buckets.
*/
const FNV_OFFSET = 0x811c9dc5 >>> 0;
const FNV_PRIME = 0x01000193;
/** Minutes offset in [0, 59] for the given stagger key. */
export function staggerMinuteOffset(key: string): number {
if (!key || typeof key !== 'string') return 0;
let h = FNV_OFFSET;
for (let i = 0; i < key.length; i++) {
h ^= key.charCodeAt(i);
h = Math.imul(h, FNV_PRIME) >>> 0;
}
return h % 60;
}
/** Seconds offset — same thing scaled for convenience. */
export function staggerSecondOffset(key: string): number {
return staggerMinuteOffset(key) * 60;
}
+25 -1
View File
@@ -75,6 +75,10 @@ export interface MinionJob {
remove_on_fail: boolean;
idempotency_key: string | null;
// v12: scheduler polish — quiet-hours gate + deterministic stagger
quiet_hours: Record<string, unknown> | null;
stagger_key: string | null;
// Results
result: Record<string, unknown> | null;
progress: unknown | null;
@@ -116,6 +120,19 @@ export interface MinionJobInput {
max_spawn_depth?: number;
/** Global dedup key. Same key returns the existing job, no second row created. */
idempotency_key?: string;
// v12: scheduler polish
/**
* Quiet-hours window evaluated at claim time. Jobs whose current wall-clock
* falls inside the window are deferred (delay +15m) or skipped per policy.
* Example: `{start:22,end:7,tz:"America/Los_Angeles",policy:"defer"}`.
*/
quiet_hours?: { start: number; end: number; tz: string; policy?: 'skip' | 'defer' };
/**
* Deterministic stagger key. When multiple jobs share a key (same cron fire),
* their claim order is decorrelated by hash-based minute-offset. Optional.
*/
stagger_key?: string;
}
/** Constructor options for MinionQueue (v7). */
@@ -142,8 +159,13 @@ export interface MinionJobContext {
name: string;
data: Record<string, unknown>;
attempts_made: number;
/** AbortSignal for cooperative cancellation (fires on pause or lock loss). */
/** AbortSignal for cooperative cancellation (fires on timeout, cancel, pause, or lock loss). */
signal: AbortSignal;
/** AbortSignal that fires only on worker process SIGTERM/SIGINT. Handlers sensitive
* to deploy restarts (e.g. the shell handler, which must run a SIGTERM → 5s → SIGKILL
* sequence on its child) listen to this in addition to `signal`. Most handlers can
* ignore it — workers give them the full 30s cleanup race to finish naturally. */
shutdownSignal: AbortSignal;
/** Update structured progress (not just 0-100). */
updateProgress(progress: unknown): Promise<void>;
/** Accumulate token usage for this job. */
@@ -296,6 +318,8 @@ export function rowToMinionJob(row: Record<string, unknown>): MinionJob {
remove_on_complete: row.remove_on_complete === true,
remove_on_fail: row.remove_on_fail === true,
idempotency_key: (row.idempotency_key as string) || null,
quiet_hours: row.quiet_hours ? (typeof row.quiet_hours === 'string' ? JSON.parse(row.quiet_hours) : row.quiet_hours) as Record<string, unknown> : null,
stagger_key: (row.stagger_key as string) || null,
result: row.result ? (typeof row.result === 'string' ? JSON.parse(row.result) : row.result) as Record<string, unknown> : null,
progress: row.progress ? (typeof row.progress === 'string' ? JSON.parse(row.progress) : row.progress) : null,
error_text: (row.error_text as string) || null,
+113 -9
View File
@@ -20,6 +20,18 @@ import { UnrecoverableError } from './types.ts';
import { MinionQueue } from './queue.ts';
import { calculateBackoff } from './backoff.ts';
import { randomUUID } from 'crypto';
import { evaluateQuietHours, type QuietHoursConfig } from './quiet-hours.ts';
/**
* Read the quiet_hours JSONB column off a MinionJob, if present. The
* column was added in schema migration v12; older rows + versions of
* MinionJob that don't include the field return null.
*/
function readQuietHoursConfig(job: MinionJob): QuietHoursConfig | null {
const cfg = (job as MinionJob & { quiet_hours?: unknown }).quiet_hours;
if (!cfg || typeof cfg !== 'object') return null;
return cfg as QuietHoursConfig;
}
/** Per-job in-flight state (isolated per job, not shared on the worker). */
interface InFlightJob {
@@ -37,6 +49,13 @@ export class MinionWorker {
private inFlight = new Map<number, InFlightJob>();
private workerId = randomUUID();
/** Fires only on worker process SIGTERM/SIGINT. Handlers that need to run
* shutdown-specific cleanup (e.g. shell handler's SIGTERM→SIGKILL sequence on
* its child) subscribe via `ctx.shutdownSignal`. Separated from the per-job
* abort controller so non-shell handlers don't get cancelled mid-flight on
* deploy restart — they still get the full 30s cleanup race instead. */
private shutdownAbort = new AbortController();
private opts: Required<MinionWorkerOpts>;
constructor(
@@ -76,10 +95,16 @@ export class MinionWorker {
await this.queue.ensureSchema();
this.running = true;
// Graceful shutdown
// Graceful shutdown. Fires shutdownAbort so handlers subscribed to
// `ctx.shutdownSignal` (currently: shell handler) can run their own cleanup
// BEFORE the 30s cleanup race expires. Non-shell handlers ignore shutdown
// and keep running — they get the full 30s window.
const shutdown = () => {
console.log('Minion worker shutting down...');
this.running = false;
if (!this.shutdownAbort.signal.aborted) {
this.shutdownAbort.abort(new Error('shutdown'));
}
};
process.on('SIGTERM', shutdown);
process.on('SIGINT', shutdown);
@@ -123,7 +148,17 @@ export class MinionWorker {
);
if (job) {
this.launchJob(job, lockToken);
// Quiet-hours gate: evaluated at claim time, not dispatch.
// Config lives on the job record (jsonb column added in
// schema migration v12). Worker releases the job back to the
// queue on 'defer' or marks it cancelled on 'skip'.
const quietCfg = readQuietHoursConfig(job);
const verdict = evaluateQuietHours(quietCfg);
if (verdict !== 'allow') {
await this.handleQuietHoursDefer(job, lockToken, verdict);
} else {
this.launchJob(job, lockToken);
}
} else if (this.inFlight.size === 0) {
// No jobs and nothing in flight, poll
await new Promise(resolve => setTimeout(resolve, this.opts.pollInterval));
@@ -155,6 +190,60 @@ export class MinionWorker {
}
}
/**
* Called when a claimed job falls inside its quiet-hours window. The
* claim already set status='active' and held the lock; we reverse the
* state transition (defer) or cancel outright (skip).
*
* 'defer' → status='waiting', lock cleared, delay_until bumped ahead by
* 15 minutes so the same job doesn't immediately re-claim. Jobs will
* naturally pick up again once `now` exits the quiet window.
* 'skip' → status='cancelled', final_status='skipped_quiet_hours'. The
* event is dropped.
*/
private async handleQuietHoursDefer(job: MinionJob, lockToken: string, verdict: 'skip' | 'defer'): Promise<void> {
try {
if (verdict === 'skip') {
// Route through MinionQueue.cancelJob so parent jobs in waiting-children
// see the cancellation and roll up correctly. A direct status='cancelled'
// UPDATE strands parents forever (no inbox, no dependency resolution).
// Release our lock first so cancelJob's descendant walk sees a clean state.
await this.engine.executeRaw(
`UPDATE minion_jobs SET lock_token = NULL, lock_until = NULL, updated_at = now()
WHERE id = $1 AND lock_token = $2`,
[job.id, lockToken],
);
try {
await this.queue.cancelJob(job.id);
} catch {
// cancelJob best-effort — if the parent rollup path errors, we still
// want the job out of 'active' rather than re-claimed on next tick.
await this.engine.executeRaw(
`UPDATE minion_jobs
SET status = 'cancelled', error_text = 'skipped_quiet_hours', updated_at = now()
WHERE id = $1 AND status NOT IN ('completed','failed','dead')`,
[job.id],
);
}
console.log(`Quiet-hours skip: ${job.name} (id=${job.id})`);
} else {
// Defer: release back to delayed, push delay ~15 minutes to avoid
// immediate re-claim loops when the claim query re-runs.
await this.engine.executeRaw(
`UPDATE minion_jobs
SET status = 'delayed', lock_token = NULL, lock_until = NULL,
delay_until = now() + interval '15 minutes',
updated_at = now()
WHERE id = $1 AND lock_token = $2`,
[job.id, lockToken],
);
console.log(`Quiet-hours defer: ${job.name} (id=${job.id}) → retry after 15m`);
}
} catch (e) {
console.error(`handleQuietHoursDefer error for job ${job.id}:`, e instanceof Error ? e.message : String(e));
}
}
/** Stop the worker gracefully. */
stop(): void {
this.running = false;
@@ -170,7 +259,7 @@ export class MinionWorker {
if (!renewed) {
console.warn(`Lock lost for job ${job.id}, aborting execution`);
clearInterval(lockTimer);
abort.abort();
abort.abort(new Error('lock-lost'));
}
}, this.opts.lockDuration / 2);
@@ -184,7 +273,7 @@ export class MinionWorker {
timeoutTimer = setTimeout(() => {
if (!abort.signal.aborted) {
console.warn(`Job ${job.id} (${job.name}) hit per-job timeout (${job.timeout_ms}ms), aborting`);
abort.abort();
abort.abort(new Error('timeout'));
}
}, job.timeout_ms);
}
@@ -211,13 +300,18 @@ export class MinionWorker {
return;
}
// Build job context with per-job AbortSignal
// Build job context with per-job AbortSignal + shared shutdown signal.
// Most handlers only care about `signal` (timeout / cancel / lock-loss).
// `shutdownSignal` is separate: fires only on worker process SIGTERM/SIGINT.
// Handlers that need to run cleanup before worker exit (shell handler's
// SIGTERM→5s→SIGKILL on its child) subscribe to shutdownSignal too.
const context: MinionJobContext = {
id: job.id,
name: job.name,
data: job.data,
attempts_made: job.attempts_made,
signal: abort.signal,
shutdownSignal: this.shutdownAbort.signal,
updateProgress: async (progress: unknown) => {
await this.queue.updateProgress(job.id, lockToken, progress);
},
@@ -267,13 +361,23 @@ export class MinionWorker {
} catch (err) {
clearInterval(lockTimer);
// If aborted (paused or lock lost), don't try to fail the job
// If the per-job abort fired, derive the reason from signal.reason (set
// by whichever site aborted: 'timeout' / 'cancel' / 'lock-lost'). We call
// failJob unconditionally — the DB match on status='active' + lock_token
// makes it idempotent: if another path (handleTimeouts, cancelJob, stall)
// already flipped status, our call no-ops cleanly. The prior silent-return
// left jobs stranded in 'active' until a secondary sweep, breaking
// timeout/cancel contracts downstream callers rely on.
let errorText: string;
if (abort.signal.aborted) {
console.log(`Job ${job.id} (${job.name}) aborted (paused or lock lost)`);
return;
const reason = abort.signal.reason instanceof Error
? abort.signal.reason.message
: String(abort.signal.reason || 'aborted');
errorText = `aborted: ${reason}`;
} else {
errorText = err instanceof Error ? err.message : String(err);
}
const errorText = err instanceof Error ? err.message : String(err);
const isUnrecoverable = err instanceof UnrecoverableError;
const attemptsExhausted = job.attempts_made + 1 >= job.max_attempts;
+202 -26
View File
@@ -13,7 +13,7 @@ import { importFromContent } from './import-file.ts';
import { hybridSearch } from './search/hybrid.ts';
import { expandQuery } from './search/expansion.ts';
import { dedupResults } from './search/dedup.ts';
import { extractPageLinks, isAutoLinkEnabled } from './link-extraction.ts';
import { extractPageLinks, isAutoLinkEnabled, isAutoTimelineEnabled, parseTimelineEntries, makeResolver, type UnresolvedFrontmatterRef } from './link-extraction.ts';
import * as db from './db.ts';
// --- Types ---
@@ -221,7 +221,7 @@ const get_page: Operation = {
const put_page: Operation = {
name: 'put_page',
description: 'Write/update a page (markdown with frontmatter). Chunks, embeds, reconciles tags, and (when auto_link is enabled) extracts + reconciles graph links.',
description: 'Write/update a page (markdown with frontmatter). Chunks, embeds, reconciles tags, and (when auto_link/auto_timeline are enabled) extracts + reconciles graph links and timeline entries.',
params: {
slug: { type: 'string', required: true, description: 'Page slug' },
content: { type: 'string', required: true, description: 'Full markdown content with YAML frontmatter' },
@@ -248,9 +248,15 @@ const put_page: Operation = {
// Combined with the backlink boost in hybridSearch, attacker-placed targets
// would surface higher in search. Local CLI users (ctx.remote=false) opt
// into this behavior; MCP/remote writes do not.
let autoLinks: { created: number; removed: number; errors: number } | { error: string } | { skipped: 'remote' } | undefined;
let autoLinks:
| { created: number; removed: number; errors: number; unresolved: UnresolvedFrontmatterRef[] }
| { error: string }
| { skipped: 'remote' }
| undefined;
let autoTimeline: { created: number } | { error: string } | { skipped: 'remote' } | undefined;
if (ctx.remote === true) {
autoLinks = { skipped: 'remote' };
autoTimeline = { skipped: 'remote' };
} else if (result.parsedPage) {
try {
const enabled = await isAutoLinkEnabled(ctx.engine);
@@ -260,6 +266,52 @@ const put_page: Operation = {
} catch (e) {
autoLinks = { error: e instanceof Error ? e.message : String(e) };
}
// Timeline extraction mirrors auto-link: runs post-write, best-effort,
// never blocks the write. ON CONFLICT DO NOTHING in
// addTimelineEntriesBatch keeps it idempotent across re-writes, so a
// page that's edited and re-written won't duplicate its own timeline.
try {
const enabled = await isAutoTimelineEnabled(ctx.engine);
if (enabled) {
const fullContent = result.parsedPage.compiled_truth + '\n' + result.parsedPage.timeline;
const entries = parseTimelineEntries(fullContent);
if (entries.length > 0) {
const batch = entries.map(e => ({
slug,
date: e.date,
summary: e.summary,
detail: e.detail || '',
}));
const created = await ctx.engine.addTimelineEntriesBatch(batch);
autoTimeline = { created };
} else {
autoTimeline = { created: 0 };
}
}
} catch (e) {
autoTimeline = { error: e instanceof Error ? e.message : String(e) };
}
}
// Post-write validator lint (PR 2.5): feature-flag-gated, non-blocking.
// When `writer.lint_on_put_page` is enabled, runs the BrainWriter's
// validators on the freshly-written page and logs findings to
// ingest_log + ~/.gbrain/validator-lint.jsonl. Does NOT reject the
// write — that's the deferred strict-mode flip after the 7-day soak.
let writerLint: { error_count: number; warning_count: number } | { skipped: string } | undefined;
try {
const { runPostWriteLint } = await import('./output/post-write.ts');
const lint = await runPostWriteLint(ctx.engine, result.slug);
if (lint.ran) {
writerLint = {
error_count: lint.findings.filter(f => f.severity === 'error').length,
warning_count: lint.findings.filter(f => f.severity === 'warning').length,
};
} else if (lint.skippedReason) {
writerLint = { skipped: lint.skippedReason };
}
} catch {
// Non-fatal; never blocks put_page.
}
return {
@@ -267,6 +319,8 @@ const put_page: Operation = {
status: result.status === 'imported' ? 'created_or_updated' : result.status,
chunks: result.chunks,
...(autoLinks ? { auto_links: autoLinks } : {}),
...(autoTimeline ? { auto_timeline: autoTimeline } : {}),
...(writerLint ? { writer_lint: writerLint } : {}),
};
},
cliHints: { name: 'put', positional: ['slug'], stdin: 'content' },
@@ -286,43 +340,125 @@ async function runAutoLink(
engine: BrainEngine,
slug: string,
parsed: { type: PageType; compiled_truth: string; timeline: string; frontmatter: Record<string, unknown> },
): Promise<{ created: number; removed: number; errors: number }> {
): Promise<{ created: number; removed: number; errors: number; unresolved: UnresolvedFrontmatterRef[] }> {
const fullContent = parsed.compiled_truth + '\n' + parsed.timeline;
const candidates = extractPageLinks(fullContent, parsed.frontmatter, parsed.type);
// Live-mode resolver: per-put throwaway cache, pg_trgm + optional search.
const resolver = makeResolver(engine, { mode: 'live' });
const { candidates, unresolved } = await extractPageLinks(
slug, fullContent, parsed.frontmatter, parsed.type, resolver,
);
// Resolve which targets exist (skip refs to non-existent pages to avoid FK
// violation churn in addLink). One getAllSlugs call upfront, O(1) lookup.
const allSlugs = await engine.getAllSlugs();
const valid = candidates.filter(c => allSlugs.has(c.targetSlug));
const valid = candidates.filter(c =>
allSlugs.has(c.targetSlug) && (!c.fromSlug || allSlugs.has(c.fromSlug))
);
// Split candidates by direction. Outgoing (fromSlug === slug or unset) are
// this page's own edges, reconciled against getLinks(slug). Incoming
// (fromSlug !== slug — frontmatter with `direction: incoming`) are edges
// where this page is the TO side; reconciled against getBacklinks(slug)
// but SCOPED to the frontmatter edges this page authored via
// (link_source='frontmatter' AND origin_slug = slug). We never touch
// frontmatter edges authored by OTHER pages.
const out = valid.filter(c => !c.fromSlug || c.fromSlug === slug);
const inc = valid.filter(c => c.fromSlug && c.fromSlug !== slug);
// Run getLinks + addLink/removeLink loops inside a single transaction so that
// concurrent put_page calls on the same slug can't race the reconciliation:
// without this, two simultaneous writes both read stale `existingKeys` and
// re-create links the other side just removed (lost-update). The transaction
// serializes via row-level locks on `links` rows touched by addLink/removeLink.
return await engine.transaction(async (tx) => {
const existing = await tx.getLinks(slug);
const desiredKeys = new Set(valid.map(c => `${c.targetSlug}\u0000${c.linkType}`));
const existingKeys = new Set(existing.map(l => `${l.to_slug}\u0000${l.link_type}`));
// re-create links the other side just removed (lost-update).
//
// Row-level locks alone aren't enough: both writers can read the same
// `existingKeys` set BEFORE either mutates a row, so the union-of-writes
// race survives. A transaction-scoped advisory lock keyed on the slug
// hash serializes the entire reconciliation across processes. Falls
// through on engines that don't support pg_advisory_xact_lock (PGLite is
// single-process so there's no cross-process concern there anyway).
const result = await engine.transaction(async (tx) => {
try {
await tx.executeRaw(`SELECT pg_advisory_xact_lock(hashtext($1)::bigint)`, [`auto_link:${slug}`]);
} catch {
// engine doesn't support advisory locks — fall through
}
const existingOut = await tx.getLinks(slug);
// Incoming: we only look at frontmatter edges WE authored (origin_slug=slug).
// Non-frontmatter and other-page frontmatter edges survive untouched.
const existingInRaw = await tx.getBacklinks(slug);
const existingIn = existingInRaw.filter(
l => l.link_source === 'frontmatter' && l.origin_slug === slug,
);
// Reconcilable outgoing edges: markdown + our own frontmatter edges.
// Manual edges (link_source='manual') are NEVER touched by reconciliation.
const reconcilableOut = existingOut.filter(
l => l.link_source === 'markdown' || l.link_source == null ||
(l.link_source === 'frontmatter' && l.origin_slug === slug),
);
const outKeys = new Set(out.map(c =>
`${c.targetSlug}\u0000${c.linkType}\u0000${c.linkSource ?? 'markdown'}`
));
const incKeys = new Set(inc.map(c =>
`${c.fromSlug}\u0000${c.linkType}`
));
let created = 0, removed = 0, errors = 0;
// Add new + update existing.
for (const c of valid) {
// Add outgoing edges.
for (const c of out) {
try {
await tx.addLink(slug, c.targetSlug, c.context, c.linkType);
if (!existingKeys.has(`${c.targetSlug}\u0000${c.linkType}`)) created++;
await tx.addLink(
slug, c.targetSlug, c.context, c.linkType,
c.linkSource, c.originSlug, c.originField,
);
const existKey = `${c.targetSlug}\u0000${c.linkType}\u0000${c.linkSource ?? 'markdown'}`;
const exists = reconcilableOut.some(l =>
`${l.to_slug}\u0000${l.link_type}\u0000${l.link_source ?? 'markdown'}` === existKey
);
if (!exists) created++;
} catch {
errors++;
}
}
// Remove stale (in DB but not in desired set).
for (const l of existing) {
const key = `${l.to_slug}\u0000${l.link_type}`;
if (!desiredKeys.has(key)) {
// Add incoming edges (other page → slug).
for (const c of inc) {
try {
await tx.addLink(
c.fromSlug!, c.targetSlug, c.context, c.linkType,
'frontmatter', c.originSlug, c.originField,
);
const existKey = `${c.fromSlug}\u0000${c.linkType}`;
const exists = existingIn.some(l =>
`${l.from_slug}\u0000${l.link_type}` === existKey
);
if (!exists) created++;
} catch {
errors++;
}
}
// Remove stale outgoing (markdown or our-frontmatter, not in desired set).
for (const l of reconcilableOut) {
const key = `${l.to_slug}\u0000${l.link_type}\u0000${l.link_source ?? 'markdown'}`;
if (!outKeys.has(key)) {
try {
await tx.removeLink(slug, l.to_slug, l.link_type);
await tx.removeLink(slug, l.to_slug, l.link_type, l.link_source ?? undefined);
removed++;
} catch {
errors++;
}
}
}
// Remove stale incoming (our frontmatter → slug, not in desired set).
for (const l of existingIn) {
const key = `${l.from_slug}\u0000${l.link_type}`;
if (!incKeys.has(key)) {
try {
await tx.removeLink(l.from_slug, slug, l.link_type, 'frontmatter');
removed++;
} catch {
errors++;
@@ -332,6 +468,8 @@ async function runAutoLink(
return { created, removed, errors };
});
return { ...result, unresolved };
}
const delete_page: Operation = {
@@ -909,26 +1047,44 @@ const file_url: Operation = {
const submit_job: Operation = {
name: 'submit_job',
description: 'Submit a background job to the Minions queue',
description: 'Submit a background job to the Minions queue. Built-in types: sync, embed, lint, import, extract, backlinks, autopilot-cycle. The `shell` type is CLI-only and rejected over MCP.',
params: {
name: { type: 'string', required: true, description: 'Job type (sync, embed, lint, import)' },
name: { type: 'string', required: true, description: 'Job type (sync, embed, lint, import, extract, backlinks, autopilot-cycle; shell is CLI-only)' },
data: { type: 'object', description: 'Job payload (JSON)' },
queue: { type: 'string', description: 'Queue name (default: "default")' },
priority: { type: 'number', description: 'Priority (0 = highest, default: 0)' },
max_attempts: { type: 'number', description: 'Max retry attempts (default: 3)' },
delay: { type: 'number', description: 'Delay in ms before eligible' },
timeout_ms: { type: 'number', description: 'Per-job wall-clock timeout in ms; aborted job goes to dead' },
},
mutating: true,
handler: async (ctx, p) => {
if (ctx.dryRun) return { dry_run: true, action: 'submit_job', name: p.name };
const name = typeof p.name === 'string' ? p.name.trim() : '';
if (ctx.dryRun) return { dry_run: true, action: 'submit_job', name };
// Submit-side MCP guard: reject protected job names from untrusted callers
// BEFORE we touch the DB. This is the first of the two security layers
// (the second is MinionQueue.add's check). Independent of the worker-side
// GBRAIN_ALLOW_SHELL_JOBS env flag — even if that flag is on, MCP callers
// cannot submit protected-type jobs.
const { isProtectedJobName } = await import('./minions/protected-names.ts');
if (ctx.remote && isProtectedJobName(name)) {
throw new OperationError('permission_denied', `'${name}' jobs cannot be submitted over MCP (CLI-only for security)`);
}
const { MinionQueue } = await import('./minions/queue.ts');
const queue = new MinionQueue(ctx.engine);
return queue.add(p.name as string, (p.data as Record<string, unknown>) || {}, {
// Trusted flag set only when this is a local (non-remote) submission. When
// remote=true, the guard above has already thrown for protected names, so
// passing undefined here is safe for any non-protected name that slips by.
const trusted = !ctx.remote && isProtectedJobName(name) ? { allowProtectedSubmit: true } : undefined;
return queue.add(name, (p.data as Record<string, unknown>) || {}, {
queue: (p.queue as string) || 'default',
priority: (p.priority as number) || 0,
max_attempts: (p.max_attempts as number) || 3,
delay: (p.delay as number) || undefined,
});
timeout_ms: (p.timeout_ms as number) || undefined,
}, trusted);
},
};
@@ -1082,6 +1238,24 @@ const send_job_message: Operation = {
},
};
// --- Orphans ---
const find_orphans: Operation = {
name: 'find_orphans',
description: 'Find pages with no inbound wikilinks. Essential for content enrichment cycles.',
params: {
include_pseudo: {
type: 'boolean',
description: 'Include auto-generated and pseudo pages (default: false)',
},
},
handler: async (_ctx, p) => {
const { findOrphans } = await import('../commands/orphans.ts');
return findOrphans((p.include_pseudo as boolean) || false);
},
cliHints: { name: 'orphans', hidden: true },
};
// --- Exports ---
export const operations: Operation[] = [
@@ -1110,6 +1284,8 @@ export const operations: Operation[] = [
// Jobs (Minions)
submit_job, get_job, list_jobs, cancel_job, retry_job, get_job_progress,
pause_job, resume_job, replay_job, send_job_message,
// Orphans
find_orphans,
];
export const operationsByName = Object.fromEntries(
+157
View File
@@ -0,0 +1,157 @@
/**
* Post-write validator hook runs after put_page / importFromContent
* succeeds, in LINT MODE only. Findings are logged; they do not reject
* the write.
*
* This is the PR 2.5 minimal integration: we want observability on how
* many pages the brain would reject in strict mode BEFORE flipping the
* strict-mode default (CEO plan: "follow-on release gated on BrainBench
* regression 1pt + 7-day soak + zero false-positive count").
*
* Gated on config `writer.lint_on_put_page`. Default: false (no change to
* current put_page behavior). When enabled, findings land in:
* - ingest_log (via engine.logIngest) durable, agent-inspectable
* - ~/.gbrain/validator-lint.jsonl local file for drift-over-time analysis
*
* Pages with `validate: false` frontmatter skip the validators entirely
* (grandfather opt-out from PR 2 migration).
*/
import { appendFileSync, existsSync, mkdirSync } from 'fs';
import { homedir } from 'os';
import { dirname, join } from 'path';
import type { BrainEngine } from '../engine.ts';
import {
citationValidator,
linkValidator,
backLinkValidator,
tripleHrValidator,
} from './validators/index.ts';
import type { ValidationFinding, PageValidator } from './writer.ts';
const LINT_LOG_FILE = join(homedir(), '.gbrain', 'validator-lint.jsonl');
const LINT_CONFIG_KEY = 'writer.lint_on_put_page';
export interface PostWriteLintOpts {
/** Override config lookup; used by tests. If true, always run. */
force?: boolean;
/** Skip file writes; used by tests. */
noLog?: boolean;
}
export interface PostWriteLintResult {
ran: boolean;
slug: string;
findings: ValidationFinding[];
skippedReason?: string;
}
/**
* Read the writer.lint_on_put_page flag. Returns true only when set to an
* explicit enable value; anything else (unset, 'false', '0') is false.
* Fails safe on read error.
*/
export async function isLintOnPutPageEnabled(engine: BrainEngine): Promise<boolean> {
try {
const v = await engine.getConfig(LINT_CONFIG_KEY);
if (v === null || v === undefined) return false;
const lc = v.toLowerCase();
return lc === 'true' || lc === '1' || lc === 'yes' || lc === 'on';
} catch {
return false;
}
}
/**
* Run the four built-in validators on a freshly-written page.
* Returns empty findings when:
* - flag disabled
* - page not found (shouldn't happen in normal put_page flow)
* - page has frontmatter.validate === false
*/
export async function runPostWriteLint(
engine: BrainEngine,
slug: string,
opts: PostWriteLintOpts = {},
): Promise<PostWriteLintResult> {
const enabled = opts.force ?? await isLintOnPutPageEnabled(engine);
if (!enabled) {
return { ran: false, slug, findings: [], skippedReason: 'flag_disabled' };
}
const page = await engine.getPage(slug);
if (!page) {
return { ran: false, slug, findings: [], skippedReason: 'page_not_found' };
}
if (page.frontmatter?.validate === false) {
return { ran: false, slug, findings: [], skippedReason: 'validate_false_frontmatter' };
}
const validators: PageValidator[] = [citationValidator, linkValidator, backLinkValidator, tripleHrValidator];
const ctx = {
slug,
type: page.type,
compiledTruth: page.compiled_truth,
timeline: page.timeline,
frontmatter: page.frontmatter ?? {},
engine,
};
const findings: ValidationFinding[] = [];
for (const v of validators) {
try {
const out = await v.validate(ctx);
for (const f of out) findings.push(f);
} catch {
// Validator-level failure shouldn't break the main put_page flow;
// swallow and continue with other validators.
}
}
if (findings.length > 0 && !opts.noLog) {
writeLocalLintLog(slug, findings);
await writeIngestLog(engine, slug, findings);
}
return { ran: true, slug, findings };
}
// ---------------------------------------------------------------------------
// Loggers
// ---------------------------------------------------------------------------
function writeLocalLintLog(slug: string, findings: ValidationFinding[]): void {
try {
const dir = dirname(LINT_LOG_FILE);
if (!existsSync(dir)) mkdirSync(dir, { recursive: true });
const line = JSON.stringify({
ts: new Date().toISOString(),
slug,
error_count: findings.filter(f => f.severity === 'error').length,
warning_count: findings.filter(f => f.severity === 'warning').length,
findings: findings.slice(0, 20), // cap to prevent runaway log size
}) + '\n';
appendFileSync(LINT_LOG_FILE, line, 'utf-8');
} catch {
// Non-fatal; logging failure shouldn't break the main flow.
}
}
async function writeIngestLog(engine: BrainEngine, slug: string, findings: ValidationFinding[]): Promise<void> {
try {
const errorCount = findings.filter(f => f.severity === 'error').length;
const warningCount = findings.filter(f => f.severity === 'warning').length;
const summary = `post-write lint: ${errorCount} error, ${warningCount} warning` +
(errorCount > 0 ? ` (top: ${findings.find(f => f.severity === 'error')!.message.slice(0, 80)})` : '');
await engine.logIngest({
source_type: 'writer_lint',
source_ref: slug,
pages_updated: [slug],
summary,
});
} catch {
// Non-fatal.
}
}
+236
View File
@@ -0,0 +1,236 @@
/**
* Scaffolder deterministic URL / citation / link builders.
*
* The anti-hallucination invariant: LLM picks WHAT to write. Code builds
* WHERE and HOW. Every user-visible URL, every citation, every wikilink is
* assembled from resolver outputs or structured IDs never from LLM text.
*
* Example (from the Wintermute memory log, 2026-04-13): an agent was asked
* to rewrite daily files and it invented a "Philip Leung" entity that didn't
* exist. With the Scaffolder, the LLM writes "the attendee was mentioned
* again" and code writes the actual `[Philip Leung](people/philip-leung.md)`
* from the verified resolver result. If the slug doesn't exist, Scaffolder
* throws instead of rendering a broken link.
*
* This file is pure and has no runtime deps beyond the engine handle passed
* through SlugRegistry. It's trivially testable.
*/
import type { ResolverResult } from '../resolvers/interface.ts';
// ---------------------------------------------------------------------------
// Tweet citations
// ---------------------------------------------------------------------------
export interface TweetCitationInput {
/** X handle without leading @. */
handle: string;
tweetId: string;
/** ISO date for the "X/{handle}, YYYY-MM-DD" label. Uses today if omitted. */
dateISO?: string;
}
/**
* Build the canonical tweet citation:
* [Source: [X/garrytan, 2026-04-18](https://x.com/garrytan/status/1234567890)]
*
* The URL is constructed from (handle, tweetId) both are typed, neither is
* free text. If either is malformed, throws ScaffoldError before rendering.
*/
export function tweetCitation(input: TweetCitationInput): string {
assertHandle(input.handle);
assertTweetId(input.tweetId);
const date = input.dateISO ?? isoDateToday();
assertISODate(date);
const handle = input.handle.replace(/^@/, '');
const url = `https://x.com/${handle}/status/${input.tweetId}`;
return `[Source: [X/${handle}, ${date}](${url})]`;
}
// ---------------------------------------------------------------------------
// Gmail citations
// ---------------------------------------------------------------------------
export interface EmailCitationInput {
/** Which Gmail account (e.g. "garry@ycombinator.com") for the authuser URL. */
account: string;
/** Gmail message id (hex); comes from API response. */
messageId: string;
/** Subject for the label; free text, trimmed + truncated. */
subject: string;
dateISO?: string;
}
/**
* Canonical email citation with a deep link that opens the actual thread:
* [Source: email "Subject line", 2026-04-18](https://mail.google.com/mail/u/?authuser=...#inbox/...)
*
* URL shape matches the pattern Wintermute's ingest pipeline builds from API
* responses, so brain-page links and agent-generated links use the same
* format (cross-tool consistency).
*/
export function emailCitation(input: EmailCitationInput): string {
assertNonEmpty(input.account, 'account');
assertMessageId(input.messageId);
const subject = sanitizeLabel(input.subject, 80);
const date = input.dateISO ?? isoDateToday();
assertISODate(date);
const url = `https://mail.google.com/mail/u/?authuser=${encodeURIComponent(input.account)}#inbox/${input.messageId}`;
return `[Source: email "${subject}", ${date}](${url})`;
}
// ---------------------------------------------------------------------------
// Generic resolver-backed citation
// ---------------------------------------------------------------------------
/**
* Build a citation from a ResolverResult. Useful for sources that don't have
* a dedicated helper above (Perplexity query, Mistral OCR, etc.).
*
* Output:
* [Source: perplexity-sonar, 2026-04-18](https://url-from-raw-if-any)
*
* If the resolver didn't return a resolvable URL and one isn't provided,
* the citation still renders with just source + date, so it's honest about
* what we can link to.
*/
export function sourceCitation(
result: Pick<ResolverResult<unknown>, 'source' | 'fetchedAt'>,
opts?: { url?: string; label?: string },
): string {
const date = result.fetchedAt.toISOString().slice(0, 10);
const label = opts?.label ?? result.source;
if (opts?.url) {
return `[Source: [${label}, ${date}](${opts.url})]`;
}
return `[Source: ${label}, ${date}]`;
}
// ---------------------------------------------------------------------------
// Entity wikilinks
// ---------------------------------------------------------------------------
export interface EntityLinkInput {
/** Slug in dir/name form, e.g. "people/alice-smith". */
slug: string;
/** Display text for the link. Trimmed. */
displayText: string;
/**
* Relative path prefix. Usually "../../" from a daily file up to brain
* root; caller knows its depth. Default is no prefix (absolute-from-brain).
*/
relativePrefix?: string;
}
/**
* Build a brain-internal wikilink:
* [Alice Smith](../../people/alice-smith.md)
*
* Does NOT verify the slug exists here that's the SlugRegistry's job at
* BrainWriter commit time. Scaffolder just renders the bytes.
*/
export function entityLink(input: EntityLinkInput): string {
assertSlug(input.slug);
const display = sanitizeLabel(input.displayText, 120);
const prefix = input.relativePrefix ?? '';
return `[${display}](${prefix}${input.slug}.md)`;
}
// ---------------------------------------------------------------------------
// Timeline entry line
// ---------------------------------------------------------------------------
export interface TimelineLineInput {
dateISO: string;
summary: string;
/** Pre-built citation string (use tweetCitation/emailCitation/sourceCitation). */
citation?: string;
}
/**
* Canonical timeline entry line:
* - **2026-04-18** | Summary here [Source: ...]
*/
export function timelineLine(input: TimelineLineInput): string {
assertISODate(input.dateISO);
const summary = sanitizeLabel(input.summary, 500);
const cite = input.citation ? ` ${input.citation}` : '';
return `- **${input.dateISO}** | ${summary}${cite}`;
}
// ---------------------------------------------------------------------------
// Errors
// ---------------------------------------------------------------------------
export class ScaffoldError extends Error {
constructor(public code: 'invalid_handle' | 'invalid_tweet_id' | 'invalid_slug' | 'invalid_message_id' | 'invalid_date' | 'empty', message: string) {
super(message);
this.name = 'ScaffoldError';
}
}
// ---------------------------------------------------------------------------
// Validators
// ---------------------------------------------------------------------------
// X handle: 1-15 chars, alphanumeric + underscore. Optional leading @ allowed.
const HANDLE_RE = /^@?[A-Za-z0-9_]{1,15}$/;
function assertHandle(h: unknown): asserts h is string {
if (typeof h !== 'string' || !HANDLE_RE.test(h)) {
throw new ScaffoldError('invalid_handle', `Invalid X handle: ${JSON.stringify(h)}`);
}
}
// Tweet id: 1-20 digits (X snowflake ids).
const TWEET_ID_RE = /^\d{1,20}$/;
function assertTweetId(id: unknown): asserts id is string {
if (typeof id !== 'string' || !TWEET_ID_RE.test(id)) {
throw new ScaffoldError('invalid_tweet_id', `Invalid tweet id: ${JSON.stringify(id)}`);
}
}
// Gmail message id: hex string, at least 10 chars.
const MESSAGE_ID_RE = /^[A-Za-z0-9]{10,60}$/;
function assertMessageId(id: unknown): asserts id is string {
if (typeof id !== 'string' || !MESSAGE_ID_RE.test(id)) {
throw new ScaffoldError('invalid_message_id', `Invalid Gmail message id: ${JSON.stringify(id)}`);
}
}
// Slug: dir/name with allowed characters. Matches PageType dir conventions.
const SLUG_RE = /^[a-z0-9][a-z0-9\-]*(\/[a-z0-9][a-z0-9\-]*)+$/;
function assertSlug(slug: unknown): asserts slug is string {
if (typeof slug !== 'string' || !SLUG_RE.test(slug)) {
throw new ScaffoldError('invalid_slug', `Invalid slug: ${JSON.stringify(slug)}`);
}
}
const ISO_DATE_RE = /^\d{4}-\d{2}-\d{2}$/;
function assertISODate(d: unknown): asserts d is string {
if (typeof d !== 'string' || !ISO_DATE_RE.test(d)) {
throw new ScaffoldError('invalid_date', `Invalid ISO date (expect YYYY-MM-DD): ${JSON.stringify(d)}`);
}
}
function assertNonEmpty(s: unknown, field: string): asserts s is string {
if (typeof s !== 'string' || s.length === 0) {
throw new ScaffoldError('empty', `Required field ${field} must be a non-empty string`);
}
}
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
function isoDateToday(): string {
return new Date().toISOString().slice(0, 10);
}
/** Trim, strip newlines/brackets that would break markdown, cap length. */
function sanitizeLabel(s: string, maxLen: number): string {
return s
.replace(/[\n\r]/g, ' ')
.replace(/[\[\]]/g, '')
.trim()
.slice(0, maxLen);
}
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/**
* SlugRegistry slug-creation with collision detection.
*
* Wraps engine.resolveSlugs to answer "does slug X already exist?" and,
* when a desired slug collides with a different entity, returns a
* disambiguated alternative (alice-smith-2, alice-smith-3, ...) or merges
* the two when the caller confirms they're the same entity.
*
* Built around a real pain: today `slugify(name)` is a pure function with
* no database lookup, so "Marc Benioff" and "Marc Benioff (with hyphen)"
* both produce `marc-benioff` and silently overwrite each other.
*
* v1 scope: detect collisions at create time, append numeric disambiguator,
* expose merge() for after-the-fact de-dup. Auto-heuristic merging (email
* match, x_handle match) is PR 2.5+.
*/
import type { BrainEngine } from '../engine.ts';
import type { PageType } from '../types.ts';
export interface CreateSlugInput {
/**
* Desired slug in dir/name form, e.g. "people/alice-smith".
* If it's already taken, we append a disambiguator.
*/
desiredSlug: string;
/** Display name the user sees (for error messages). */
displayName: string;
/** Entity type — used to scope conflict detection to the same dir. */
type: PageType;
/**
* Disambiguator strategy when there's a collision:
* - 'append-numeric' (default): alice-smith alice-smith-2
* - 'throw': raise SlugCollision so caller handles it explicitly
*/
onCollision?: 'append-numeric' | 'throw';
/**
* Max disambiguator suffix before giving up. Default 50 (alice-smith-50
* would be absurd). Caller should surface a human-readable error above
* this threshold.
*/
maxDisambiguator?: number;
}
export interface CreatedSlug {
slug: string;
/** True if we returned the exact desiredSlug; false if we disambiguated. */
exact: boolean;
/** If disambiguated, the number we appended. */
disambiguator?: number;
}
// ---------------------------------------------------------------------------
// Errors
// ---------------------------------------------------------------------------
export type SlugRegistryErrorCode = 'collision' | 'disambiguator_exhausted' | 'invalid_slug';
export class SlugRegistryError extends Error {
constructor(
public code: SlugRegistryErrorCode,
message: string,
public slug?: string,
) {
super(message);
this.name = 'SlugRegistryError';
}
}
// ---------------------------------------------------------------------------
// SlugRegistry
// ---------------------------------------------------------------------------
const SLUG_RE = /^[a-z0-9][a-z0-9\-]*(\/[a-z0-9][a-z0-9\-]*)+$/;
export class SlugRegistry {
constructor(private engine: BrainEngine) {}
/**
* Create a new slug, or disambiguate if taken. Checks engine.getPage(slug)
* to detect collisions. Caller must pass the SAME engine instance used by
* BrainWriter to avoid racey reads.
*/
async create(input: CreateSlugInput): Promise<CreatedSlug> {
const { desiredSlug, displayName, onCollision = 'append-numeric', maxDisambiguator = 50 } = input;
if (!SLUG_RE.test(desiredSlug)) {
throw new SlugRegistryError('invalid_slug', `Invalid slug: ${desiredSlug} (expect dir/name form)`, desiredSlug);
}
// Fast path: desired is free
const existing = await this.engine.getPage(desiredSlug);
if (!existing) {
return { slug: desiredSlug, exact: true };
}
// Collision
if (onCollision === 'throw') {
throw new SlugRegistryError(
'collision',
`Slug already exists: ${desiredSlug} (for "${displayName}")`,
desiredSlug,
);
}
// append-numeric disambiguation: start at 2 (matches "alice-smith" → "alice-smith-2")
for (let n = 2; n <= maxDisambiguator; n++) {
const candidate = `${desiredSlug}-${n}`;
const conflict = await this.engine.getPage(candidate);
if (!conflict) {
return { slug: candidate, exact: false, disambiguator: n };
}
}
throw new SlugRegistryError(
'disambiguator_exhausted',
`Exhausted disambiguator for ${desiredSlug} after ${maxDisambiguator} attempts. Likely indicates runaway duplicate creation.`,
desiredSlug,
);
}
/**
* Probe whether a slug is free, without creating anything. Useful for
* pre-flight checks in interactive flows.
*/
async isFree(slug: string): Promise<boolean> {
if (!SLUG_RE.test(slug)) return false;
const existing = await this.engine.getPage(slug);
return !existing;
}
/**
* Suggest up to N disambiguator candidates for a slug, without taking any.
* Caller renders them in a CLI prompt, user picks one. Used by
* `gbrain integrity --auto` when it finds two entities that slug-match
* but aren't obviously the same person.
*/
async suggestDisambiguators(desiredSlug: string, n = 3): Promise<string[]> {
if (!SLUG_RE.test(desiredSlug)) return [];
const out: string[] = [];
for (let i = 2; i <= 2 + 20 && out.length < n; i++) {
const candidate = `${desiredSlug}-${i}`;
if (await this.isFree(candidate)) out.push(candidate);
}
return out;
}
}
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/**
* back-link validator every outbound link has a reverse back-link.
*
* The Iron Law: if page A mentions page B, page B must link back to A.
*
* After v0.12.0 shipped auto-link + runAutoLink reconciliation, the graph
* layer creates the forward edges automatically on put_page. This validator
* catches the MINORITY case where:
* - A page has a link that runAutoLink didn't extract (unusual phrasing)
* - A bulk edit to timeline forgot to back-link the mentioned entity
* - A manual page edit added a brand-new wikilink between commits
*
* It reads engine.getLinks(slug) and verifies each (slug target) has a
* matching (target slug) via engine.getBacklinks(target). Missing reverses
* are warnings (lint mode), not errors runAutoLink is the authoritative
* enforcer at write time; this is defense-in-depth.
*/
import type { PageValidator, PageValidationContext, ValidationFinding } from '../writer.ts';
export const backLinkValidator: PageValidator = {
id: 'back-link',
async validate(ctx: PageValidationContext): Promise<ValidationFinding[]> {
const findings: ValidationFinding[] = [];
const outbound = await ctx.engine.getLinks(ctx.slug);
if (outbound.length === 0) return findings;
// Iron Law: if ctx.slug → target, target must ALSO link back to ctx.slug.
// We check target's outbound links; if none of them point at ctx.slug,
// the back-link is missing.
const uniqueTargets = new Set<string>();
for (const link of outbound) uniqueTargets.add(link.to_slug);
for (const target of uniqueTargets) {
const targetOutbound = await ctx.engine.getLinks(target);
const hasReverse = targetOutbound.some(l => l.to_slug === ctx.slug);
if (!hasReverse) {
findings.push({
slug: ctx.slug,
validator: 'back-link',
severity: 'warning',
message: `Outbound link to ${target} has no back-link (${target} does not reference ${ctx.slug}). runAutoLink should reconcile this on next put_page; flag for inspection.`,
});
}
}
return findings;
},
};
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/**
* citation validator every paragraph in compiled_truth carries
* at least one citation marker.
*
* "Citation marker" is one of:
* - [Source: ...] (explicit gbrain citation form)
* - [text](https://...) or (http://...) (inline URL link)
* - [Source: [label](url)] (wrapped form)
*
* Paragraphs are separated by one or more blank lines. The validator skips:
* - Fenced code blocks (``` ... ``` or ~~~ ... ~~~)
* - Inline code (`...`)
* - HTML comments (<!-- ... -->)
* - Headings (lines starting with #)
* - Pure lists of links (e.g. "## See Also" sections)
* - Lines that are only bold/italic labels (e.g. "**Status:** Active")
* - Quoted blocks starting with > (they inherit the parent paragraph's
* citation context; validating each line would be noise)
*
* Paragraph-level, not sentence-level: "every factual sentence" is a
* semantic judgment that blocks legit edits. Paragraph-level is
* deterministic and still produces "no silent factual claims on brain
* pages" as the downstream invariant.
*/
import type { PageValidator, PageValidationContext, ValidationFinding } from '../writer.ts';
// `[Source: ...]` must carry non-whitespace content — a bare `[Source:]`
// or `[Source: ]` is decorative and does not satisfy the citation check.
// The URL form `](https://...)` already requires a non-empty scheme+host.
const CITATION_RE = /\[Source:\s*\S[^\]]*\]|\]\(\s*https?:\/\/[^)]+\)/i;
export const citationValidator: PageValidator = {
id: 'citation',
async validate(ctx: PageValidationContext): Promise<ValidationFinding[]> {
const findings: ValidationFinding[] = [];
const paragraphs = splitParagraphs(ctx.compiledTruth);
for (const p of paragraphs) {
if (!looksFactual(p.stripped)) continue;
if (CITATION_RE.test(p.stripped)) continue;
findings.push({
slug: ctx.slug,
validator: 'citation',
severity: 'error',
line: p.startLine,
message: `Paragraph has no citation marker: "${truncate(p.stripped, 80)}"`,
});
}
return findings;
},
};
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
interface Paragraph {
/** Text with code/comments/inline-code stripped out. */
stripped: string;
/** Original paragraph text (for diagnostic truncation). */
raw: string;
/** 1-based line number where paragraph starts. */
startLine: number;
}
/**
* Split compiled_truth into paragraphs, dropping content we don't validate.
* Returns paragraphs with `stripped` = cleaned body (no fences/comments/code).
*/
export function splitParagraphs(md: string): Paragraph[] {
const out: Paragraph[] = [];
const lines = md.split('\n');
let currentLines: string[] = [];
let currentStartLine = 1;
let insideFence = false;
let fenceMarker = '';
const flush = (endLine: number) => {
if (currentLines.length === 0) return;
const raw = currentLines.join('\n');
const stripped = stripInlineNoise(raw).trim();
if (stripped.length > 0) {
out.push({ stripped, raw, startLine: currentStartLine });
}
currentLines = [];
currentStartLine = endLine + 1;
};
for (let i = 0; i < lines.length; i++) {
const line = lines[i];
const lineNum = i + 1;
// Fenced code blocks: the fence line itself goes to the paragraph so
// structure is preserved, but its contents are dropped from validation.
if (insideFence) {
if (line.startsWith(fenceMarker)) {
insideFence = false;
}
continue; // drop fenced lines entirely
}
if (line.startsWith('```') || line.startsWith('~~~')) {
insideFence = true;
fenceMarker = line.startsWith('```') ? '```' : '~~~';
// flush current paragraph if any; fences break paragraphs
flush(i);
currentStartLine = lineNum + 1;
continue;
}
// Blank line → paragraph boundary
if (/^\s*$/.test(line)) {
flush(i);
currentStartLine = lineNum + 1;
continue;
}
// Accumulate
if (currentLines.length === 0) currentStartLine = lineNum;
currentLines.push(line);
}
flush(lines.length);
return out;
}
/**
* Strip markdown constructs that shouldn't satisfy or fail the citation check:
* - Inline code `...`
* - HTML comments <!-- ... -->
*/
function stripInlineNoise(s: string): string {
return s
// HTML comments (multiline safe via flag)
.replace(/<!--[\s\S]*?-->/g, ' ')
// Inline code
.replace(/`[^`\n]*`/g, ' ')
.replace(/\s+/g, ' ');
}
/**
* Heuristic: does this paragraph make a factual claim that should carry a
* citation? Returns false for:
* - Headings (# ... through ###### ...)
* - Pure list of wikilinks (## See Also sections)
* - Key-value lines ("**Status:** Active")
* - Blockquotes (> ...)
* - Short labels
* - Frontmatter fragments that slipped through
*/
function looksFactual(stripped: string): boolean {
if (stripped.length === 0) return false;
// Heading
if (/^#{1,6}\s/.test(stripped)) return false;
// Blockquote
if (/^>/.test(stripped)) return false;
// Pure key-value line: "**Key:** value" or "Key: value" with no prose after
if (/^[-*]?\s*\*\*[^*]+:\*\*\s*\S[^.]*$/.test(stripped) && !/\./.test(stripped)) return false;
// Table rows (|...|)
if (/^\s*\|.+\|\s*$/.test(stripped)) return false;
// Bullet of only a wikilink / url: `- [text](path)` with nothing else
if (/^[-*]\s*\[[^\]]+\]\([^)]+\)\s*$/.test(stripped)) return false;
// Short labels without a verb-ish word (too noisy to require citations on)
if (stripped.length < 40 && !/\b(is|was|were|has|have|had|will|would|built|raised|founded|said|wrote|attended|works|joined|left|shipped)\b/i.test(stripped)) return false;
return true;
}
function truncate(s: string, n: number): string {
return s.length <= n ? s : s.slice(0, n - 3) + '...';
}
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/**
* Barrel export + convenience installer for the four built-in validators.
*/
import type { BrainWriter } from '../writer.ts';
import { citationValidator } from './citation.ts';
import { linkValidator } from './link.ts';
import { backLinkValidator } from './back-link.ts';
import { tripleHrValidator } from './triple-hr.ts';
export { citationValidator, linkValidator, backLinkValidator, tripleHrValidator };
/** Register all four built-in validators on a BrainWriter instance. */
export function registerBuiltinValidators(writer: BrainWriter): void {
writer.register(citationValidator);
writer.register(linkValidator);
writer.register(backLinkValidator);
writer.register(tripleHrValidator);
}
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/**
* link validator brain-internal wikilinks point to pages that exist.
*
* Scans compiled_truth + timeline for `[text](path)` markdown links.
* Classifies each:
* - External URL (http://, https://) → skipped; url_reachable resolver
* handles reachability on-demand, not pre-write.
* - Relative .md wikilink resolved against brain via engine.getPage.
* Dangling links emit an error.
* - Anything else (mailto:, internal anchors) warning.
*
* We strip leading "../" components so a link from a daily file written as
* `../../people/alice.md` resolves to the `people/alice` slug the engine
* knows. This matches how engine.addLink is called downstream.
*/
import type { PageValidator, PageValidationContext, ValidationFinding } from '../writer.ts';
const MD_LINK_RE = /\[([^\]]+)\]\(([^)]+)\)/g;
export const linkValidator: PageValidator = {
id: 'link',
async validate(ctx: PageValidationContext): Promise<ValidationFinding[]> {
const findings: ValidationFinding[] = [];
const body = `${ctx.compiledTruth}\n${ctx.timeline}`;
// Collect unique internal targets first to batch engine lookups.
const internalTargets = new Set<string>();
const linkPositions = new Map<string, { display: string; raw: string; line: number }[]>();
for (const { match, line } of iterateLinks(body)) {
const [, display, href] = match;
if (isExternalUrl(href)) continue;
if (isNonBrainRef(href)) {
findings.push({
slug: ctx.slug,
validator: 'link',
severity: 'warning',
line,
message: `Non-brain link (mailto/anchor/scheme): ${truncate(href, 80)}`,
});
continue;
}
const slug = normalizeToSlug(href);
if (!slug) {
findings.push({
slug: ctx.slug,
validator: 'link',
severity: 'warning',
line,
message: `Unresolvable link path: ${truncate(href, 80)}`,
});
continue;
}
internalTargets.add(slug);
const list = linkPositions.get(slug) ?? [];
list.push({ display, raw: href, line });
linkPositions.set(slug, list);
}
// Batch-check which targets exist.
for (const slug of internalTargets) {
const page = await ctx.engine.getPage(slug);
if (page) continue;
const positions = linkPositions.get(slug) ?? [];
for (const pos of positions) {
findings.push({
slug: ctx.slug,
validator: 'link',
severity: 'error',
line: pos.line,
message: `Dangling wikilink to ${slug} (no such page)`,
});
}
}
return findings;
},
};
// ---------------------------------------------------------------------------
// Helpers (exported for tests)
// ---------------------------------------------------------------------------
export function isExternalUrl(href: string): boolean {
return /^https?:\/\//i.test(href);
}
export function isNonBrainRef(href: string): boolean {
return /^(mailto:|tel:|javascript:|data:|#)/i.test(href);
}
/**
* Normalize a link href to a brain slug. Accepts:
* "people/alice-smith.md"
* "../people/alice-smith.md"
* "../../people/alice-smith.md"
* "/people/alice-smith.md"
* "people/alice-smith" (no extension)
* Returns null if the shape isn't slug-like.
*/
export function normalizeToSlug(href: string): string | null {
let s = href.trim();
// Strip repeated leading relative-path components (./, ../, multiple levels).
while (/^\.\.?\/+/.test(s)) s = s.replace(/^\.\.?\/+/, '');
// Strip leading slashes
s = s.replace(/^\/+/g, '');
// Strip trailing .md
s = s.replace(/\.md$/i, '');
// Must look like dir/name (or dir/name/subname)
if (!/^[a-z0-9][a-z0-9\-]*(\/[a-z0-9][a-z0-9\-]*)+$/i.test(s)) return null;
return s.toLowerCase();
}
/**
* Iterate markdown links with 1-based line numbers. Skips links that appear
* inside fenced code blocks those are examples, not wikilinks.
*/
function* iterateLinks(body: string): IterableIterator<{ match: RegExpExecArray; line: number }> {
const lines = body.split('\n');
let insideFence = false;
let fenceMarker = '';
for (let i = 0; i < lines.length; i++) {
const line = lines[i];
if (insideFence) {
if (line.startsWith(fenceMarker)) insideFence = false;
continue;
}
if (line.startsWith('```') || line.startsWith('~~~')) {
insideFence = true;
fenceMarker = line.startsWith('```') ? '```' : '~~~';
continue;
}
// Strip inline code so `[x](y)` inside backticks doesn't get validated
const cleanedLine = line.replace(/`[^`\n]*`/g, '');
MD_LINK_RE.lastIndex = 0;
let m: RegExpExecArray | null;
while ((m = MD_LINK_RE.exec(cleanedLine)) !== null) {
yield { match: m, line: i + 1 };
}
}
}
function truncate(s: string, n: number): string {
return s.length <= n ? s : s.slice(0, n - 3) + '...';
}
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/**
* triple-hr validator compiled_truth / timeline split hygiene.
*
* The engine stores compiled_truth and timeline as two separate columns,
* but authored markdown combines them with a triple-HR separator:
*
* ## Compiled truth above the bar
* ...content...
*
* ---
*
* ---
*
* ---
*
* ## Timeline
* - **YYYY-MM-DD** | ...
*
* parseMarkdown() splits at the FIRST standalone `---` in the body, so if
* authored content accidentally puts `---` inside compiled_truth (e.g.
* someone writes "---" as a separator for a bullet list), the split happens
* in the wrong place and half the page lands in the wrong column.
*
* This validator catches two cases on the in-memory state (post-split):
* 1. compiled_truth contains a bare `---` line would have re-split if
* round-tripped through parseMarkdown(). Warning only; lint-mode.
* 2. timeline has content that looks like a header section (# / ##)
* likely an authoring mistake that put compiled-truth bullets below
* the bar.
*
* Strict-mode severity is warning rather than error because some legacy
* pages deliberately use thematic-break `---` mid-paragraph. Flipping to
* error would break them without their opt-out.
*/
import type { PageValidator, PageValidationContext, ValidationFinding } from '../writer.ts';
export const tripleHrValidator: PageValidator = {
id: 'triple-hr',
async validate(ctx: PageValidationContext): Promise<ValidationFinding[]> {
const findings: ValidationFinding[] = [];
// Case 1: standalone --- inside compiled_truth
const compiledLines = ctx.compiledTruth.split('\n');
let insideFence = false;
let fenceMarker = '';
for (let i = 0; i < compiledLines.length; i++) {
const line = compiledLines[i];
if (insideFence) {
if (line.startsWith(fenceMarker)) insideFence = false;
continue;
}
if (line.startsWith('```') || line.startsWith('~~~')) {
insideFence = true;
fenceMarker = line.startsWith('```') ? '```' : '~~~';
continue;
}
if (/^-{3,}\s*$/.test(line)) {
findings.push({
slug: ctx.slug,
validator: 'triple-hr',
severity: 'warning',
line: i + 1,
message: `Bare "---" line in compiled_truth would re-split on round-trip. Use spaced em-dash or thematic-break inside a list context.`,
});
break; // one finding per page is enough
}
}
// Case 2: timeline has a heading (###) that looks like compiled-truth content
// spilled below the bar. Timeline should be bullet-only lines or empty.
const timelineLines = ctx.timeline.split('\n');
for (let i = 0; i < timelineLines.length; i++) {
const line = timelineLines[i].trim();
if (line.length === 0) continue;
// Skip the top-level "## Timeline" header if the engine kept it
if (/^##\s+Timeline\s*$/i.test(line)) continue;
if (/^#{1,6}\s/.test(line)) {
findings.push({
slug: ctx.slug,
validator: 'triple-hr',
severity: 'warning',
line: i + 1,
message: `Heading in timeline section: "${truncate(line, 60)}". Timeline entries should be append-only bullet lines.`,
});
break;
}
}
return findings;
},
};
function truncate(s: string, n: number): string {
return s.length <= n ? s : s.slice(0, n - 3) + '...';
}
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/**
* BrainWriter transaction-scoped writer with pre-commit validators.
*
* The anti-hallucination contract:
* 1. Every mutation flows through a WriteTx.
* 2. On commit, validators run over the touched pages.
* 3. Strict mode: any validator error rolls back the tx + throws.
* 4. Lint mode: validators warn but don't block (default behavior pre-flip).
* 5. Pages with `validate: false` frontmatter skip the validators entirely
* (grandfathered legacy pages).
*
* The writer does NOT do engine I/O itself it wraps engine.transaction and
* delegates to the transactional engine. Routing callers (publish.ts,
* put_page, etc.) is PR 2.5.
*
* Pre-commit validation is the key win over "write now, lint later":
* a bad citation or dangling back-link never lands on disk.
*/
import type { BrainEngine } from '../engine.ts';
import type { PageType, TimelineInput } from '../types.ts';
import type { ResolverContext } from '../resolvers/interface.ts';
import { SlugRegistry } from './slug-registry.ts';
// ---------------------------------------------------------------------------
// Types
// ---------------------------------------------------------------------------
export type StrictMode = 'strict' | 'lint' | 'off';
export interface BrainWriterOptions {
/**
* 'strict' validators run and a single error rolls back the transaction.
* 'lint' validators run and report; writes commit regardless.
* 'off' validators are skipped entirely.
* Default: 'lint' (the safe default for PR 2 rollout; strict flips in a
* follow-on release after soak).
*/
strictMode?: StrictMode;
}
export interface EntityInput {
/** Desired slug (e.g. "people/alice-smith"). May be disambiguated. */
desiredSlug: string;
displayName: string;
type: PageType;
compiledTruth: string;
timeline?: string;
frontmatter?: Record<string, unknown>;
}
export interface ValidationFinding {
slug: string;
validator: string;
severity: 'error' | 'warning';
line?: number;
message: string;
}
export interface ValidationReport {
findings: ValidationFinding[];
errorCount: number;
warningCount: number;
/** Slugs that were touched during the transaction. */
touchedSlugs: string[];
}
export class WriteError extends Error {
constructor(
public code: 'validation_failed' | 'invalid_input' | 'slug_collision' | 'unknown',
message: string,
public findings?: ValidationFinding[],
) {
super(message);
this.name = 'WriteError';
}
}
/**
* Validator contract. Each validator gets a page slug + its current state
* (post-pending-write, pre-commit) and returns findings. Pure validators
* must not do their own writes.
*/
export interface PageValidator {
readonly id: string;
validate(ctx: PageValidationContext): Promise<ValidationFinding[]>;
}
export interface PageValidationContext {
slug: string;
type: PageType;
compiledTruth: string;
timeline: string;
frontmatter: Record<string, unknown>;
engine: BrainEngine;
}
// ---------------------------------------------------------------------------
// WriteTx — the transactional surface callers use
// ---------------------------------------------------------------------------
export interface WriteTx {
createEntity(input: EntityInput): Promise<string>;
appendTimeline(slug: string, entry: TimelineInput): Promise<void>;
setCompiledTruth(slug: string, body: string): Promise<void>;
setFrontmatterField(slug: string, key: string, value: unknown): Promise<void>;
putRawData(slug: string, source: string, data: object): Promise<void>;
/**
* Add an outbound link AND the reverse back-link atomically. Wraps
* engine.addLink both directions inside this transaction. `context` and
* `linkType` mirror engine.addLink semantics.
*/
addLink(from: string, to: string, context?: string, linkType?: string): Promise<void>;
/** Set of slugs touched in this transaction. Read-only; validators use it. */
readonly touchedSlugs: Set<string>;
/** Context the BrainWriter was opened with. Validators inspect ctx.remote. */
readonly context: ResolverContext;
}
class WriteTxImpl implements WriteTx {
readonly touchedSlugs = new Set<string>();
private slugRegistry: SlugRegistry;
constructor(
private engine: BrainEngine,
public readonly context: ResolverContext,
) {
this.slugRegistry = new SlugRegistry(engine);
}
async createEntity(input: EntityInput): Promise<string> {
if (!input.desiredSlug || !input.displayName || !input.type) {
throw new WriteError('invalid_input', 'createEntity requires desiredSlug, displayName, and type');
}
// Cross-process TOCTOU guard: take a transaction-scoped advisory lock
// keyed on the desired slug prefix so two putPage('people/alice') calls
// from separate processes serialize at the DB level. The second caller's
// slugRegistry.create() then observes the first's write and disambiguates.
// PGLite is single-process so this is a harmless no-op there.
try {
await this.engine.executeRaw(
`SELECT pg_advisory_xact_lock(hashtext($1)::bigint)`,
[input.desiredSlug],
);
} catch {
// Some engines/test doubles may not support advisory locks. Fall
// through — within-process collisions are still caught by the existing
// getPage() check, and this only reduces protection against
// cross-process races (which don't exist on embedded engines anyway).
}
const { slug } = await this.slugRegistry.create({
desiredSlug: input.desiredSlug,
displayName: input.displayName,
type: input.type,
});
await this.engine.putPage(slug, {
type: input.type,
title: input.displayName,
compiled_truth: input.compiledTruth,
timeline: input.timeline ?? '',
frontmatter: input.frontmatter ?? {},
});
this.touchedSlugs.add(slug);
return slug;
}
async appendTimeline(slug: string, entry: TimelineInput): Promise<void> {
await this.engine.addTimelineEntry(slug, entry);
this.touchedSlugs.add(slug);
}
async setCompiledTruth(slug: string, body: string): Promise<void> {
const existing = await this.engine.getPage(slug);
if (!existing) throw new WriteError('invalid_input', `setCompiledTruth: page not found: ${slug}`);
await this.engine.putPage(slug, {
type: existing.type,
title: existing.title,
compiled_truth: body,
timeline: existing.timeline,
frontmatter: existing.frontmatter,
});
this.touchedSlugs.add(slug);
}
async setFrontmatterField(slug: string, key: string, value: unknown): Promise<void> {
const existing = await this.engine.getPage(slug);
if (!existing) throw new WriteError('invalid_input', `setFrontmatterField: page not found: ${slug}`);
const nextFm = { ...existing.frontmatter, [key]: value };
await this.engine.putPage(slug, {
type: existing.type,
title: existing.title,
compiled_truth: existing.compiled_truth,
timeline: existing.timeline,
frontmatter: nextFm,
});
this.touchedSlugs.add(slug);
}
async putRawData(slug: string, source: string, data: object): Promise<void> {
await this.engine.putRawData(slug, source, data);
this.touchedSlugs.add(slug);
}
async addLink(from: string, to: string, context?: string, linkType?: string): Promise<void> {
await this.engine.addLink(from, to, context, linkType);
// Reverse back-link — both directions inside the same outer transaction.
// Uses 'backlink' label on the reverse if no linkType was specified so
// the reverse is distinguishable from the forward semantic type.
await this.engine.addLink(to, from, context, linkType ? `${linkType}_back` : 'backlink');
this.touchedSlugs.add(from);
this.touchedSlugs.add(to);
}
}
// ---------------------------------------------------------------------------
// BrainWriter
// ---------------------------------------------------------------------------
export class BrainWriter {
private validators: PageValidator[] = [];
private strictMode: StrictMode;
constructor(
private engine: BrainEngine,
opts: BrainWriterOptions = {},
) {
this.strictMode = opts.strictMode ?? 'lint';
}
register(validator: PageValidator): void {
this.validators.push(validator);
}
/**
* Run `fn` inside an engine transaction. On success, run validators across
* all touched slugs. If strict mode + any error-severity finding rollback.
* Validators never run against pages with `validate: false` frontmatter
* (grandfathered pages opt out until `gbrain integrity` repairs them).
*/
async transaction<T>(fn: (tx: WriteTx) => Promise<T>, ctx: ResolverContext): Promise<{ result: T; report: ValidationReport }> {
const strict = this.strictMode;
const validators = this.validators;
let report: ValidationReport | null = null;
const txResult = await this.engine.transaction(async (txEngine) => {
const tx = new WriteTxImpl(txEngine, ctx);
const result = await fn(tx);
// Validators run before the outer transaction commits.
if (strict !== 'off') {
report = await runValidators(txEngine, validators, tx.touchedSlugs);
// `ctx.logger.info` would be nice but keep validator behavior uniform
// regardless of strict/lint mode. Caller inspects the report.
if (strict === 'strict' && report.errorCount > 0) {
throw new WriteError('validation_failed', `BrainWriter: ${report.errorCount} validator error(s) — transaction rolled back`, report.findings);
}
}
return result;
});
return { result: txResult, report: report ?? emptyReport() };
}
/** Testing hook: set strict mode without re-instantiating. */
setStrictMode(mode: StrictMode): void {
this.strictMode = mode;
}
get registeredValidators(): string[] {
return this.validators.map(v => v.id);
}
}
// ---------------------------------------------------------------------------
// Validation runner
// ---------------------------------------------------------------------------
async function runValidators(
engine: BrainEngine,
validators: PageValidator[],
touchedSlugs: Set<string>,
): Promise<ValidationReport> {
const findings: ValidationFinding[] = [];
for (const slug of touchedSlugs) {
const page = await engine.getPage(slug);
if (!page) continue; // could have been deleted in this tx
// Grandfather opt-out
if (page.frontmatter?.validate === false) continue;
const ctx: PageValidationContext = {
slug,
type: page.type,
compiledTruth: page.compiled_truth,
timeline: page.timeline,
frontmatter: page.frontmatter ?? {},
engine,
};
for (const v of validators) {
const out = await v.validate(ctx);
for (const f of out) findings.push(f);
}
}
const errorCount = findings.filter(f => f.severity === 'error').length;
const warningCount = findings.filter(f => f.severity === 'warning').length;
return {
findings,
errorCount,
warningCount,
touchedSlugs: [...touchedSlugs],
};
}
function emptyReport(): ValidationReport {
return { findings: [], errorCount: 0, warningCount: 0, touchedSlugs: [] };
}
// ---------------------------------------------------------------------------
// Public surface
// ---------------------------------------------------------------------------
export { SlugRegistry } from './slug-registry.ts';
export type { CreateSlugInput, CreatedSlug } from './slug-registry.ts';
export * from './scaffold.ts';
+82 -19
View File
@@ -321,43 +321,67 @@ export class PGLiteEngine implements BrainEngine {
}
// Links
async addLink(from: string, to: string, context?: string, linkType?: string): Promise<void> {
async addLink(
from: string,
to: string,
context?: string,
linkType?: string,
linkSource?: string,
originSlug?: string,
originField?: string,
): Promise<void> {
const src = linkSource ?? 'markdown';
await this.db.query(
`INSERT INTO links (from_page_id, to_page_id, link_type, context)
SELECT f.id, t.id, $3, $4
`INSERT INTO links (from_page_id, to_page_id, link_type, context, link_source, origin_page_id, origin_field)
SELECT f.id, t.id, $3, $4, $5,
(SELECT id FROM pages WHERE slug = $6),
$7
FROM pages f, pages t
WHERE f.slug = $1 AND t.slug = $2
ON CONFLICT (from_page_id, to_page_id, link_type) DO UPDATE SET
context = EXCLUDED.context`,
[from, to, linkType || '', context || '']
ON CONFLICT (from_page_id, to_page_id, link_type, link_source, origin_page_id) DO UPDATE SET
context = EXCLUDED.context,
origin_field = EXCLUDED.origin_field`,
[from, to, linkType || '', context || '', src, originSlug ?? null, originField ?? null]
);
}
async addLinksBatch(links: LinkBatchInput[]): Promise<number> {
if (links.length === 0) return 0;
// unnest() pattern: 4 array-typed bound parameters regardless of batch size.
// Same shape as PostgresEngine. Avoids the 65535-parameter cap entirely.
// unnest() pattern: 7 array-typed bound parameters regardless of batch size.
// Same shape as PostgresEngine (v0.13). Avoids the 65535-parameter cap.
const fromSlugs = links.map(l => l.from_slug);
const toSlugs = links.map(l => l.to_slug);
// Normalize optional fields to '' to match per-row addLink + NOT NULL DDL.
const linkTypes = links.map(l => l.link_type || '');
const contexts = links.map(l => l.context || '');
const linkSources = links.map(l => l.link_source || 'markdown');
const originSlugs = links.map(l => l.origin_slug || null);
const originFields = links.map(l => l.origin_field || null);
const result = await this.db.query(
`INSERT INTO links (from_page_id, to_page_id, link_type, context)
SELECT f.id, t.id, v.link_type, v.context
FROM unnest($1::text[], $2::text[], $3::text[], $4::text[])
AS v(from_slug, to_slug, link_type, context)
`INSERT INTO links (from_page_id, to_page_id, link_type, context, link_source, origin_page_id, origin_field)
SELECT f.id, t.id, v.link_type, v.context, v.link_source, o.id, v.origin_field
FROM unnest($1::text[], $2::text[], $3::text[], $4::text[], $5::text[], $6::text[], $7::text[])
AS v(from_slug, to_slug, link_type, context, link_source, origin_slug, origin_field)
JOIN pages f ON f.slug = v.from_slug
JOIN pages t ON t.slug = v.to_slug
ON CONFLICT (from_page_id, to_page_id, link_type) DO NOTHING
LEFT JOIN pages o ON o.slug = v.origin_slug
ON CONFLICT (from_page_id, to_page_id, link_type, link_source, origin_page_id) DO NOTHING
RETURNING 1`,
[fromSlugs, toSlugs, linkTypes, contexts]
[fromSlugs, toSlugs, linkTypes, contexts, linkSources, originSlugs, originFields]
);
return result.rows.length;
}
async removeLink(from: string, to: string, linkType?: string): Promise<void> {
if (linkType !== undefined) {
async removeLink(from: string, to: string, linkType?: string, linkSource?: string): Promise<void> {
if (linkType !== undefined && linkSource !== undefined) {
await this.db.query(
`DELETE FROM links
WHERE from_page_id = (SELECT id FROM pages WHERE slug = $1)
AND to_page_id = (SELECT id FROM pages WHERE slug = $2)
AND link_type = $3
AND link_source IS NOT DISTINCT FROM $4`,
[from, to, linkType, linkSource]
);
} else if (linkType !== undefined) {
await this.db.query(
`DELETE FROM links
WHERE from_page_id = (SELECT id FROM pages WHERE slug = $1)
@@ -365,6 +389,14 @@ export class PGLiteEngine implements BrainEngine {
AND link_type = $3`,
[from, to, linkType]
);
} else if (linkSource !== undefined) {
await this.db.query(
`DELETE FROM links
WHERE from_page_id = (SELECT id FROM pages WHERE slug = $1)
AND to_page_id = (SELECT id FROM pages WHERE slug = $2)
AND link_source IS NOT DISTINCT FROM $3`,
[from, to, linkSource]
);
} else {
await this.db.query(
`DELETE FROM links
@@ -377,10 +409,13 @@ export class PGLiteEngine implements BrainEngine {
async getLinks(slug: string): Promise<Link[]> {
const { rows } = await this.db.query(
`SELECT f.slug as from_slug, t.slug as to_slug, l.link_type, l.context
`SELECT f.slug as from_slug, t.slug as to_slug,
l.link_type, l.context, l.link_source,
o.slug as origin_slug, l.origin_field
FROM links l
JOIN pages f ON f.id = l.from_page_id
JOIN pages t ON t.id = l.to_page_id
LEFT JOIN pages o ON o.id = l.origin_page_id
WHERE f.slug = $1`,
[slug]
);
@@ -389,16 +424,44 @@ export class PGLiteEngine implements BrainEngine {
async getBacklinks(slug: string): Promise<Link[]> {
const { rows } = await this.db.query(
`SELECT f.slug as from_slug, t.slug as to_slug, l.link_type, l.context
`SELECT f.slug as from_slug, t.slug as to_slug,
l.link_type, l.context, l.link_source,
o.slug as origin_slug, l.origin_field
FROM links l
JOIN pages f ON f.id = l.from_page_id
JOIN pages t ON t.id = l.to_page_id
LEFT JOIN pages o ON o.id = l.origin_page_id
WHERE t.slug = $1`,
[slug]
);
return rows as unknown as Link[];
}
async findByTitleFuzzy(
name: string,
dirPrefix?: string,
minSimilarity: number = 0.55,
): Promise<{ slug: string; similarity: number } | null> {
// Inline threshold comparison instead of `SET LOCAL pg_trgm.similarity_threshold`.
// The GUC only scopes to the current transaction and pglite auto-commits each
// .query() call, so the SET LOCAL would be a no-op. Using similarity() >= $N
// directly gives predictable behavior. Tie-breaker: sort by slug so re-runs
// pick the same winner.
const prefixPattern = dirPrefix ? `${dirPrefix}/%` : '%';
const { rows } = await this.db.query(
`SELECT slug, similarity(title, $1) AS sim
FROM pages
WHERE similarity(title, $1) >= $3
AND slug LIKE $2
ORDER BY sim DESC, slug ASC
LIMIT 1`,
[name, prefixPattern, minSimilarity]
);
if (rows.length === 0) return null;
const row = rows[0] as { slug: string; sim: number };
return { slug: row.slug, similarity: row.sim };
}
async traverseGraph(slug: string, depth: number = 5): Promise<GraphNode[]> {
// Cycle prevention: visited array tracks page IDs already in the path.
// Prevents exponential blowup on cyclic subgraphs (e.g., A->B->A).
+14 -7
View File
@@ -62,18 +62,25 @@ CREATE INDEX IF NOT EXISTS idx_chunks_embedding ON content_chunks USING hnsw (em
-- ============================================================
-- links: cross-references between pages
-- ============================================================
-- See src/schema.sql for full design notes on link_source + origin_page_id.
CREATE TABLE IF NOT EXISTS links (
id SERIAL PRIMARY KEY,
from_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
to_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
link_type TEXT NOT NULL DEFAULT '',
context TEXT NOT NULL DEFAULT '',
created_at TIMESTAMPTZ NOT NULL DEFAULT now(),
CONSTRAINT links_from_to_type_unique UNIQUE(from_page_id, to_page_id, link_type)
id SERIAL PRIMARY KEY,
from_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
to_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
link_type TEXT NOT NULL DEFAULT '',
context TEXT NOT NULL DEFAULT '',
link_source TEXT CHECK (link_source IS NULL OR link_source IN ('markdown', 'frontmatter', 'manual')),
origin_page_id INTEGER REFERENCES pages(id) ON DELETE SET NULL,
origin_field TEXT,
created_at TIMESTAMPTZ NOT NULL DEFAULT now(),
CONSTRAINT links_from_to_type_source_origin_unique
UNIQUE NULLS NOT DISTINCT (from_page_id, to_page_id, link_type, link_source, origin_page_id)
);
CREATE INDEX IF NOT EXISTS idx_links_from ON links(from_page_id);
CREATE INDEX IF NOT EXISTS idx_links_to ON links(to_page_id);
CREATE INDEX IF NOT EXISTS idx_links_source ON links(link_source);
CREATE INDEX IF NOT EXISTS idx_links_origin ON links(origin_page_id);
-- ============================================================
-- tags
+117 -35
View File
@@ -17,7 +17,7 @@ import type {
} from './types.ts';
import { GBrainError } from './types.ts';
import * as db from './db.ts';
import { validateSlug, contentHash, rowToPage, rowToChunk, rowToSearchResult, parseEmbedding } from './utils.ts';
import { validateSlug, contentHash, rowToPage, rowToChunk, rowToSearchResult, parseEmbedding, tryParseEmbedding } from './utils.ts';
export class PostgresEngine implements BrainEngine {
private _sql: ReturnType<typeof postgres> | null = null;
@@ -188,11 +188,17 @@ export class PostgresEngine implements BrainEngine {
const detailLow = opts?.detail === 'low';
// Search-only timeout: prevents DoS via expensive queries without
// affecting long-running operations like embed --all or bulk import
await sql`SET statement_timeout = '8s'`;
try {
// affecting long-running operations like embed --all or bulk import.
// SET LOCAL inside sql.begin() scopes the GUC to the transaction so
// it can never leak onto a pooled connection returned to other
// callers. A bare `SET statement_timeout` goes to an arbitrary
// connection from the pool, lives past this method, and either
// clips an unrelated caller's long-running query (DoS) or — via
// `SET statement_timeout = 0` — disables the guard for them.
const rows = await sql.begin(async sql => {
await sql`SET LOCAL statement_timeout = '8s'`;
// CTE: rank pages by FTS score, then pick the best chunk per page in SQL
const rows = await sql`
return await sql`
WITH ranked_pages AS (
SELECT p.id, p.slug, p.title, p.type,
ts_rank(p.search_vector, websearch_to_tsquery('english', ${query})) AS score
@@ -218,10 +224,8 @@ export class PostgresEngine implements BrainEngine {
FROM best_chunks
ORDER BY score DESC
`;
return rows.map(rowToSearchResult);
} finally {
await sql`SET statement_timeout = '0'`;
}
});
return rows.map(rowToSearchResult);
}
async searchVector(embedding: Float32Array, opts?: SearchOpts): Promise<SearchResult[]> {
@@ -238,10 +242,12 @@ export class PostgresEngine implements BrainEngine {
const vecStr = '[' + Array.from(embedding).join(',') + ']';
// Search-only timeout (see searchKeyword for rationale)
await sql`SET statement_timeout = '8s'`;
try {
const rows = await sql`
// Search-only timeout (see searchKeyword for rationale). SET LOCAL +
// sql.begin ensures the GUC stays transaction-scoped on the pooled
// connection.
const rows = await sql.begin(async sql => {
await sql`SET LOCAL statement_timeout = '8s'`;
return await sql`
SELECT
p.slug, p.id as page_id, p.title, p.type,
cc.id as chunk_id, cc.chunk_index, cc.chunk_text, cc.chunk_source,
@@ -257,10 +263,8 @@ export class PostgresEngine implements BrainEngine {
LIMIT ${limit}
OFFSET ${offset}
`;
return rows.map(rowToSearchResult);
} finally {
await sql`SET statement_timeout = '0'`;
}
});
return rows.map(rowToSearchResult);
}
async getEmbeddingsByChunkIds(ids: number[]): Promise<Map<number, Float32Array>> {
@@ -272,8 +276,8 @@ export class PostgresEngine implements BrainEngine {
`;
const result = new Map<number, Float32Array>();
for (const row of rows) {
const parsed = parseEmbedding(row.embedding);
if (parsed) result.set(row.id as number, parsed);
const embedding = tryParseEmbedding(row.embedding);
if (embedding) result.set(row.id as number, embedding);
}
return result;
}
@@ -351,7 +355,15 @@ export class PostgresEngine implements BrainEngine {
}
// Links
async addLink(from: string, to: string, context?: string, linkType?: string): Promise<void> {
async addLink(
from: string,
to: string,
context?: string,
linkType?: string,
linkSource?: string,
originSlug?: string,
originField?: string,
): Promise<void> {
const sql = this.sql;
// Pre-check existence so we can throw a clear error (ON CONFLICT DO UPDATE
// returns 0 rows when source SELECT is empty, indistinguishable from missing page).
@@ -363,48 +375,82 @@ export class PostgresEngine implements BrainEngine {
if (exists.length === 0) {
throw new Error(`addLink failed: page "${from}" or "${to}" not found`);
}
// Default link_source to 'markdown' for back-compat with pre-v0.13 callers.
// origin_page_id resolves from originSlug via the pages join (NULL if no slug).
const src = linkSource ?? 'markdown';
await sql`
INSERT INTO links (from_page_id, to_page_id, link_type, context)
SELECT f.id, t.id, ${linkType || ''}, ${context || ''}
INSERT INTO links (from_page_id, to_page_id, link_type, context, link_source, origin_page_id, origin_field)
SELECT f.id, t.id, ${linkType || ''}, ${context || ''}, ${src},
(SELECT id FROM pages WHERE slug = ${originSlug ?? null}),
${originField ?? null}
FROM pages f, pages t
WHERE f.slug = ${from} AND t.slug = ${to}
ON CONFLICT (from_page_id, to_page_id, link_type) DO UPDATE SET
context = EXCLUDED.context
ON CONFLICT (from_page_id, to_page_id, link_type, link_source, origin_page_id) DO UPDATE SET
context = EXCLUDED.context,
origin_field = EXCLUDED.origin_field
`;
}
async addLinksBatch(links: LinkBatchInput[]): Promise<number> {
if (links.length === 0) return 0;
const sql = this.sql;
// unnest() pattern: 4 array-typed bound parameters regardless of batch size.
// unnest() pattern: 7 array-typed bound parameters regardless of batch size.
// Avoids the 65535-parameter cap and the postgres-js sql(rows, ...) helper's
// identifier-escape gotcha when used inside a (VALUES) subquery.
//
// v0.13: added link_source, origin_slug, origin_field. Defaults:
// link_source → 'markdown' (back-compat with pre-v0.13 callers)
// origin_slug → NULL (resolves to origin_page_id IS NULL via LEFT JOIN)
// origin_field → NULL
const fromSlugs = links.map(l => l.from_slug);
const toSlugs = links.map(l => l.to_slug);
// Normalize optional fields to '' to match per-row addLink + NOT NULL DDL.
const linkTypes = links.map(l => l.link_type || '');
const contexts = links.map(l => l.context || '');
const linkSources = links.map(l => l.link_source || 'markdown');
const originSlugs = links.map(l => l.origin_slug || null);
const originFields = links.map(l => l.origin_field || null);
const result = await sql`
INSERT INTO links (from_page_id, to_page_id, link_type, context)
SELECT f.id, t.id, v.link_type, v.context
FROM unnest(${fromSlugs}::text[], ${toSlugs}::text[], ${linkTypes}::text[], ${contexts}::text[])
AS v(from_slug, to_slug, link_type, context)
INSERT INTO links (from_page_id, to_page_id, link_type, context, link_source, origin_page_id, origin_field)
SELECT f.id, t.id, v.link_type, v.context, v.link_source, o.id, v.origin_field
FROM unnest(
${fromSlugs}::text[], ${toSlugs}::text[], ${linkTypes}::text[],
${contexts}::text[], ${linkSources}::text[], ${originSlugs}::text[],
${originFields}::text[]
) AS v(from_slug, to_slug, link_type, context, link_source, origin_slug, origin_field)
JOIN pages f ON f.slug = v.from_slug
JOIN pages t ON t.slug = v.to_slug
ON CONFLICT (from_page_id, to_page_id, link_type) DO NOTHING
LEFT JOIN pages o ON o.slug = v.origin_slug
ON CONFLICT (from_page_id, to_page_id, link_type, link_source, origin_page_id) DO NOTHING
RETURNING 1
`;
return result.length;
}
async removeLink(from: string, to: string, linkType?: string): Promise<void> {
async removeLink(from: string, to: string, linkType?: string, linkSource?: string): Promise<void> {
const sql = this.sql;
if (linkType !== undefined) {
// Build up filters dynamically. linkType + linkSource are independent
// optional constraints; all four combinations are valid.
if (linkType !== undefined && linkSource !== undefined) {
await sql`
DELETE FROM links
WHERE from_page_id = (SELECT id FROM pages WHERE slug = ${from})
AND to_page_id = (SELECT id FROM pages WHERE slug = ${to})
AND link_type = ${linkType}
AND link_source IS NOT DISTINCT FROM ${linkSource}
`;
} else if (linkType !== undefined) {
await sql`
DELETE FROM links
WHERE from_page_id = (SELECT id FROM pages WHERE slug = ${from})
AND to_page_id = (SELECT id FROM pages WHERE slug = ${to})
AND link_type = ${linkType}
`;
} else if (linkSource !== undefined) {
await sql`
DELETE FROM links
WHERE from_page_id = (SELECT id FROM pages WHERE slug = ${from})
AND to_page_id = (SELECT id FROM pages WHERE slug = ${to})
AND link_source IS NOT DISTINCT FROM ${linkSource}
`;
} else {
await sql`
@@ -418,10 +464,13 @@ export class PostgresEngine implements BrainEngine {
async getLinks(slug: string): Promise<Link[]> {
const sql = this.sql;
const rows = await sql`
SELECT f.slug as from_slug, t.slug as to_slug, l.link_type, l.context
SELECT f.slug as from_slug, t.slug as to_slug,
l.link_type, l.context, l.link_source,
o.slug as origin_slug, l.origin_field
FROM links l
JOIN pages f ON f.id = l.from_page_id
JOIN pages t ON t.id = l.to_page_id
LEFT JOIN pages o ON o.id = l.origin_page_id
WHERE f.slug = ${slug}
`;
return rows as unknown as Link[];
@@ -430,15 +479,48 @@ export class PostgresEngine implements BrainEngine {
async getBacklinks(slug: string): Promise<Link[]> {
const sql = this.sql;
const rows = await sql`
SELECT f.slug as from_slug, t.slug as to_slug, l.link_type, l.context
SELECT f.slug as from_slug, t.slug as to_slug,
l.link_type, l.context, l.link_source,
o.slug as origin_slug, l.origin_field
FROM links l
JOIN pages f ON f.id = l.from_page_id
JOIN pages t ON t.id = l.to_page_id
LEFT JOIN pages o ON o.id = l.origin_page_id
WHERE t.slug = ${slug}
`;
return rows as unknown as Link[];
}
async findByTitleFuzzy(
name: string,
dirPrefix?: string,
minSimilarity: number = 0.55,
): Promise<{ slug: string; similarity: number } | null> {
const sql = this.sql;
// Use the `similarity()` function directly with an explicit threshold
// comparison. DO NOT use `SET LOCAL pg_trgm.similarity_threshold` +
// the `%` operator here — postgres.js auto-commits each sql`` call
// so `SET LOCAL` is a no-op across statement boundaries. Inline
// comparison is the only way to get predictable threshold behavior
// without wrapping the caller in a transaction.
//
// Tie-breaker: sort by slug after similarity so re-runs return the
// same winner when multiple pages score equally (prevents churn
// in put_page auto-link reconciliation).
const prefixPattern = dirPrefix ? `${dirPrefix}/%` : '%';
const rows = await sql`
SELECT slug, similarity(title, ${name}) AS sim
FROM pages
WHERE similarity(title, ${name}) >= ${minSimilarity}
AND slug LIKE ${prefixPattern}
ORDER BY sim DESC, slug ASC
LIMIT 1
`;
if (rows.length === 0) return null;
const row = rows[0] as { slug: string; sim: number };
return { slug: row.slug, similarity: row.sim };
}
async traverseGraph(slug: string, depth: number = 5): Promise<GraphNode[]> {
const sql = this.sql;
// Cycle prevention: visited array tracks page IDs already in the path.
+332
View File
@@ -0,0 +1,332 @@
/**
* url_reachable deterministic HEAD-check resolver.
*
* Input: { url: string }
* Output: { reachable: boolean, status?: number, finalUrl?: string }
*
* Used by `gbrain integrity` to detect dead-link citations on brain pages.
* Always confidence=1.0 when the backend answers (status codes are ground
* truth); confidence=0 only when the HTTP call itself fails (DNS, timeout)
* and we genuinely don't know.
*
* Security:
* - SSRF guard reuses isInternalUrl() from src/commands/integrations.ts
* (same wave-3 hardening that protects recipe health_checks).
* - Redirect chain is followed manually (max 5 hops) with per-hop
* re-validation; matches the integrations.ts pattern so no new SSRF
* bypass surface.
* - HEAD first, GET fallback when server rejects HEAD (405 / 501).
* Abort token threads through both.
*/
import { promises as dns } from 'dns';
import {
isInternalUrl,
hostnameToOctets,
isPrivateIpv4,
} from '../../../commands/integrations.ts';
import type {
Resolver,
ResolverContext,
ResolverRequest,
ResolverResult,
} from '../interface.ts';
import { ResolverError } from '../interface.ts';
export interface UrlReachableInput {
url: string;
}
export interface UrlReachableOutput {
reachable: boolean;
status?: number;
/** URL after redirect chain. Only set if different from input.url. */
finalUrl?: string;
/** Set when reachable=false and we have a human-readable reason. */
reason?: string;
}
const DEFAULT_TIMEOUT_MS = 10_000;
const MAX_REDIRECTS = 5;
export const urlReachableResolver: Resolver<UrlReachableInput, UrlReachableOutput> = {
id: 'url_reachable',
cost: 'free',
backend: 'head-check',
description: 'HEAD-check a URL, follow redirects, detect dead links. SSRF-protected.',
inputSchema: {
type: 'object',
properties: { url: { type: 'string', format: 'uri' } },
required: ['url'],
},
outputSchema: {
type: 'object',
properties: {
reachable: { type: 'boolean' },
status: { type: 'number' },
finalUrl: { type: 'string' },
reason: { type: 'string' },
},
required: ['reachable'],
},
async available(_ctx: ResolverContext): Promise<boolean> {
// Nothing to check — fetch is globally available in Bun.
return true;
},
async resolve(req: ResolverRequest<UrlReachableInput>): Promise<ResolverResult<UrlReachableOutput>> {
const { url } = req.input;
const timeoutMs = req.timeoutMs ?? DEFAULT_TIMEOUT_MS;
const signal = req.context.signal;
if (typeof url !== 'string' || url.length === 0) {
throw new ResolverError('schema', 'url_reachable: url must be a non-empty string', 'url_reachable');
}
// SSRF gate — refuse to probe internal/private/metadata endpoints (by hostname string).
if (isInternalUrl(url)) {
return {
value: {
reachable: false,
reason: 'blocked: internal/private/metadata hostname or non-http(s) scheme',
},
confidence: 1,
source: 'head-check',
fetchedAt: new Date(),
};
}
// DNS rebinding defense: resolve the hostname NOW and validate the resolved
// IP against private ranges. Prevents attacker-controlled domains whose DNS
// returns a public IP at string-validation time and `169.254.169.254` at
// fetch time. We check the A/AAAA records; if any of them is private, we
// refuse the whole URL rather than trying to pin a specific IP (node's
// fetch doesn't expose a lookup hook cleanly, and pinning would break SNI
// on some CDNs).
const rebindCheck = await checkDnsRebinding(url);
if (rebindCheck) {
return {
value: {
reachable: false,
reason: rebindCheck,
},
confidence: 1,
source: 'head-check',
fetchedAt: new Date(),
};
}
let currentUrl = url;
let status: number | undefined;
let usedMethod: 'HEAD' | 'GET' = 'HEAD';
for (let hop = 0; hop <= MAX_REDIRECTS; hop++) {
const combinedSignal = composeSignals(signal, timeoutMs);
let resp: Response;
try {
resp = await fetch(currentUrl, {
method: usedMethod,
redirect: 'manual',
signal: combinedSignal,
});
} catch (err: unknown) {
if (isAbortError(err)) {
throw new ResolverError('aborted', `url_reachable aborted (${currentUrl})`, 'url_reachable', err);
}
// fetch threw (DNS, connection refused, timeout). Not reachable, no status.
return {
value: {
reachable: false,
reason: `fetch error: ${errMessage(err).slice(0, 200)}`,
},
confidence: 1,
source: 'head-check',
fetchedAt: new Date(),
};
}
status = resp.status;
// Some servers reject HEAD with 405 / 501. Retry once as GET (same hop).
if (usedMethod === 'HEAD' && (status === 405 || status === 501)) {
usedMethod = 'GET';
continue;
}
// Redirect handling
if (status >= 300 && status < 400) {
const location = resp.headers.get('location');
if (!location) {
return {
value: {
reachable: false,
status,
finalUrl: currentUrl !== url ? currentUrl : undefined,
reason: 'redirect without Location header',
},
confidence: 1,
source: 'head-check',
fetchedAt: new Date(),
};
}
const nextUrl = new URL(location, currentUrl).toString();
// Re-validate each hop against SSRF (hostname string).
if (isInternalUrl(nextUrl)) {
return {
value: {
reachable: false,
status,
finalUrl: currentUrl,
reason: `redirect to blocked hostname: ${nextUrl}`,
},
confidence: 1,
source: 'head-check',
fetchedAt: new Date(),
};
}
// DNS rebinding defense on redirect target too.
const rebindOnRedirect = await checkDnsRebinding(nextUrl);
if (rebindOnRedirect) {
return {
value: {
reachable: false,
status,
finalUrl: currentUrl,
reason: `redirect blocked by DNS check: ${rebindOnRedirect}`,
},
confidence: 1,
source: 'head-check',
fetchedAt: new Date(),
};
}
currentUrl = nextUrl;
usedMethod = 'HEAD'; // reset to HEAD for the new hop
continue;
}
// Terminal status. 2xx/4xx both count as deterministic answers:
// 2xx = reachable, 4xx = reachable-but-dead-at-this-path.
// We flag 4xx/5xx as unreachable for integrity purposes.
const reachable = status >= 200 && status < 400;
return {
value: {
reachable,
status,
finalUrl: currentUrl !== url ? currentUrl : undefined,
reason: reachable ? undefined : `HTTP ${status}`,
},
confidence: 1,
source: 'head-check',
fetchedAt: new Date(),
};
}
// Ran out of redirect budget
return {
value: {
reachable: false,
status,
finalUrl: currentUrl,
reason: `exceeded ${MAX_REDIRECTS} redirects`,
},
confidence: 1,
source: 'head-check',
fetchedAt: new Date(),
};
},
};
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
function errMessage(err: unknown): string {
if (err instanceof Error) return err.message;
return String(err);
}
/**
* Resolve the URL's hostname via DNS and check every A/AAAA result against
* the private-IP ranges. Returns a reason string when the resolution includes
* a private target (attacker DNS rebinding); returns null when safe.
*
* Hostnames that are already IP literals skip this check isInternalUrl()
* handles them directly at the string level.
*
* If DNS resolution fails (network glitch, NXDOMAIN), we return null and let
* the main fetch attempt surface a real error. Blocking on ambiguous DNS
* would create a false-positive storm when the user has network issues.
*
* Exported for testability.
*/
export async function checkDnsRebinding(urlStr: string): Promise<string | null> {
let parsed: URL;
try { parsed = new URL(urlStr); } catch { return null; }
let host = parsed.hostname.toLowerCase();
if (host.startsWith('[') && host.endsWith(']')) host = host.slice(1, -1);
// IP literal? isInternalUrl already rejected private ones; skip DNS.
if (hostnameToOctets(host)) return null;
if (host.includes(':')) return null; // IPv6 literal
let addrs: { address: string; family: number }[];
try {
// all: true returns both A and AAAA records.
addrs = await dns.lookup(host, { all: true });
} catch {
return null; // let fetch surface the error
}
for (const a of addrs) {
if (a.family === 4) {
const octets = a.address.split('.').map(s => parseInt(s, 10));
if (octets.length === 4 && octets.every(o => Number.isFinite(o)) && isPrivateIpv4(octets)) {
return `DNS resolution of ${host} yielded private IPv4 ${a.address} (rebinding defense)`;
}
} else if (a.family === 6) {
// Minimal v6 private-range checks: loopback, link-local, unique-local, IPv4-mapped.
const v6 = a.address.toLowerCase();
if (v6 === '::1' || v6 === '::' ) return `DNS resolution of ${host} yielded IPv6 loopback ${v6}`;
if (v6.startsWith('fe80:') || v6.startsWith('fc') || v6.startsWith('fd')) {
return `DNS resolution of ${host} yielded private/link-local IPv6 ${v6}`;
}
if (v6.startsWith('::ffff:')) {
const tail = v6.slice(7);
const octets = tail.split('.').map(s => parseInt(s, 10));
if (octets.length === 4 && octets.every(o => Number.isFinite(o)) && isPrivateIpv4(octets)) {
return `DNS resolution of ${host} yielded IPv4-mapped private IPv6 ${v6}`;
}
}
}
}
return null;
}
function isAbortError(err: unknown): boolean {
return !!err && typeof err === 'object' &&
'name' in err && (err as { name: string }).name === 'AbortError';
}
/**
* Combine a caller-provided AbortSignal with a per-request timeout. If the
* caller's signal fires OR the timeout elapses, the combined signal aborts.
* Uses AbortSignal.any when available (Bun 1.1+, Node 22+); falls back to
* a manual controller for older runtimes.
*/
function composeSignals(outer: AbortSignal | undefined, timeoutMs: number): AbortSignal {
const timeoutSignal = AbortSignal.timeout(timeoutMs);
if (!outer) return timeoutSignal;
// Bun supports AbortSignal.any since 1.0.26
if (typeof (AbortSignal as { any?: (signals: AbortSignal[]) => AbortSignal }).any === 'function') {
return (AbortSignal as unknown as { any: (signals: AbortSignal[]) => AbortSignal }).any([outer, timeoutSignal]);
}
// Fallback: manual propagation
const controller = new AbortController();
const onAbort = () => controller.abort();
if (outer.aborted) controller.abort();
else outer.addEventListener('abort', onAbort, { once: true });
if (timeoutSignal.aborted) controller.abort();
else timeoutSignal.addEventListener('abort', onAbort, { once: true });
return controller.signal;
}
@@ -0,0 +1,428 @@
/**
* x_handle_to_tweet resolve an X handle + keyword hint to the tweet URL.
*
* Input: { handle: string, keywords?: string, maxCandidates?: number }
* Output: { url?, tweet_id?, text?, created_at?, candidates[] }
*
* Driven by `gbrain integrity --auto`: a brain page says "Garry tweeted about
* foo" without a link. This resolver calls the X API v2 recent-search, finds
* the matching tweet, and returns the URL + an honest confidence score.
*
* Confidence scoring (the contract `gbrain integrity` relies on):
* - 1 candidate AND (no keywords OR keywords match text well): 0.9
* - 1 candidate but weak keyword match: 0.6
* - 2-5 candidates, strongest scored: best/(best+rest*0.3) variable
* - 6+ candidates, too ambiguous to auto-pick: 0.4
* - Zero candidates: 0.0
*
* Security:
* - Bearer token from X_API_BEARER_TOKEN env, never logged.
* - Handle regex strictly matches X's username rules (1-15 chars, A-Za-z0-9_).
* - Query is URL-encoded, no string interpolation into the API path.
* - AbortSignal threaded through fetch.
*
* Rate limit: enterprise tier is 40k req/15min, but we respect 429 with
* backoff-and-retry up to 2x. Caller (integrity loop) paces via Minions in
* PR 5, so this resolver does not need its own rate bucket.
*/
import type {
Resolver,
ResolverContext,
ResolverRequest,
ResolverResult,
} from '../../interface.ts';
import { ResolverError } from '../../interface.ts';
// ---------------------------------------------------------------------------
// Public IO shapes
// ---------------------------------------------------------------------------
export interface XHandleToTweetInput {
/** X handle without leading @. e.g. "garrytan". */
handle: string;
/** Free-text hint from the brain page, used to score candidates. */
keywords?: string;
/** Max tweets to pull before scoring. Default 10, clamp 1-25. */
maxCandidates?: number;
}
export interface XTweetCandidate {
tweet_id: string;
text: string;
created_at: string;
score: number;
url: string;
}
export interface XHandleToTweetOutput {
/** Best candidate URL if confidence >= 0.5, else undefined. */
url?: string;
tweet_id?: string;
text?: string;
created_at?: string;
/** All candidates sorted by score desc. Caller may render into a review queue. */
candidates: XTweetCandidate[];
}
// ---------------------------------------------------------------------------
// Constants
// ---------------------------------------------------------------------------
const HANDLE_RE = /^[A-Za-z0-9_]{1,15}$/;
const DEFAULT_TIMEOUT_MS = 15_000;
const MAX_RETRIES_ON_429 = 2;
const X_API_BASE = 'https://api.twitter.com/2';
// ---------------------------------------------------------------------------
// Resolver
// ---------------------------------------------------------------------------
export const xHandleToTweetResolver: Resolver<XHandleToTweetInput, XHandleToTweetOutput> = {
id: 'x_handle_to_tweet',
cost: 'rate-limited',
backend: 'x-api-v2',
description: 'Find a tweet by handle + keyword hint. Used by integrity to repair bare-tweet citations.',
inputSchema: {
type: 'object',
properties: {
handle: { type: 'string', pattern: '^[A-Za-z0-9_]{1,15}$' },
keywords: { type: 'string' },
maxCandidates: { type: 'number', minimum: 1, maximum: 25 },
},
required: ['handle'],
},
outputSchema: {
type: 'object',
properties: {
url: { type: 'string', format: 'uri' },
tweet_id: { type: 'string' },
text: { type: 'string' },
created_at: { type: 'string', format: 'date-time' },
candidates: { type: 'array' },
},
required: ['candidates'],
},
async available(ctx: ResolverContext): Promise<boolean> {
return !!getBearerToken(ctx);
},
async resolve(req: ResolverRequest<XHandleToTweetInput>): Promise<ResolverResult<XHandleToTweetOutput>> {
const { handle, keywords, maxCandidates = 10 } = req.input;
const ctx = req.context;
// Input validation
if (typeof handle !== 'string' || !HANDLE_RE.test(handle)) {
throw new ResolverError(
'schema',
`x_handle_to_tweet: invalid handle "${handle}" (must match ${HANDLE_RE.source})`,
'x_handle_to_tweet',
);
}
const clampedMax = Math.max(1, Math.min(25, Math.floor(maxCandidates)));
const token = getBearerToken(ctx);
if (!token) {
throw new ResolverError(
'unavailable',
'x_handle_to_tweet: X_API_BEARER_TOKEN not set',
'x_handle_to_tweet',
);
}
const timeoutMs = req.timeoutMs ?? DEFAULT_TIMEOUT_MS;
// Query: from:handle + optional free-text keywords (hint, not required match)
const queryParts = [`from:${handle}`];
if (keywords && keywords.trim().length > 0) {
const cleanedKw = sanitizeKeywords(keywords);
if (cleanedKw) queryParts.push(cleanedKw);
}
const apiQuery = queryParts.join(' ');
const url = new URL(`${X_API_BASE}/tweets/search/recent`);
url.searchParams.set('query', apiQuery);
url.searchParams.set('max_results', String(clampedMax));
url.searchParams.set('tweet.fields', 'created_at,text');
// Fire with retry-on-429 (up to MAX_RETRIES_ON_429 extra attempts)
let lastErr: unknown;
let resp: Response | null = null;
for (let attempt = 0; attempt <= MAX_RETRIES_ON_429; attempt++) {
try {
resp = await fetch(url.toString(), {
method: 'GET',
headers: { Authorization: `Bearer ${token}` },
signal: composeSignals(ctx.signal, timeoutMs),
});
} catch (err: unknown) {
lastErr = err;
if (isAbortError(err)) {
throw new ResolverError('aborted', 'x_handle_to_tweet aborted', 'x_handle_to_tweet', err);
}
throw new ResolverError('upstream', `x_handle_to_tweet fetch failed: ${errMessage(err)}`, 'x_handle_to_tweet', err);
}
if (resp.status === 429 && attempt < MAX_RETRIES_ON_429) {
// X API honors both `Retry-After` (RFC; seconds) AND its own
// `x-rate-limit-reset` (epoch seconds). Take whichever gives us a
// longer wait — hitting the reset window early just earns another 429.
const waitMs = computeBackoffMs(resp);
ctx.logger.warn('x_handle_to_tweet: 429, backing off', { handle, waitMs, attempt });
await sleep(waitMs, ctx.signal);
continue;
}
break;
}
if (!resp) {
throw new ResolverError('upstream', `x_handle_to_tweet: no response after retries (${errMessage(lastErr)})`, 'x_handle_to_tweet');
}
// Terminal error codes
if (resp.status === 401 || resp.status === 403) {
throw new ResolverError('auth', `x_handle_to_tweet: auth failed (HTTP ${resp.status}) — check X_API_BEARER_TOKEN`, 'x_handle_to_tweet');
}
if (resp.status === 429) {
throw new ResolverError('rate_limited', 'x_handle_to_tweet: rate-limited after retries', 'x_handle_to_tweet');
}
if (!resp.ok) {
const body = await safeText(resp);
throw new ResolverError('upstream', `x_handle_to_tweet: HTTP ${resp.status}${body.slice(0, 200)}`, 'x_handle_to_tweet');
}
const json = await resp.json() as {
data?: Array<{ id: string; text: string; created_at: string }>;
meta?: { result_count?: number };
};
const tweets = json.data ?? [];
if (tweets.length === 0) {
return {
value: { candidates: [] },
confidence: 0,
source: 'x-api-v2',
fetchedAt: new Date(),
costEstimate: 0,
raw: json,
};
}
// Score by keyword overlap with tweet text
const candidates: XTweetCandidate[] = tweets
.map(t => ({
tweet_id: t.id,
text: t.text,
created_at: t.created_at,
score: scoreMatch(t.text, keywords),
url: `https://x.com/${handle}/status/${t.id}`,
}))
.sort((a, b) => b.score - a.score);
const top = candidates[0];
const rest = candidates.slice(1);
const confidence = computeConfidence(top, rest, keywords);
return {
value: {
url: confidence >= 0.5 ? top.url : undefined,
tweet_id: confidence >= 0.5 ? top.tweet_id : undefined,
text: confidence >= 0.5 ? top.text : undefined,
created_at: confidence >= 0.5 ? top.created_at : undefined,
candidates,
},
confidence,
source: 'x-api-v2',
fetchedAt: new Date(),
costEstimate: 0,
raw: json,
};
},
};
// ---------------------------------------------------------------------------
// Scoring
// ---------------------------------------------------------------------------
/**
* Confidence buckets align with `gbrain integrity --auto` three-bucket logic:
* >=0.8 auto-repair
* 0.5-0.8 goes to review queue
* <0.5 skip + log
*/
function computeConfidence(
top: XTweetCandidate,
rest: XTweetCandidate[],
keywords: string | undefined,
): number {
const kw = (keywords ?? '').trim();
// Zero candidates handled above
// Single candidate: confidence depends on keyword match quality
if (rest.length === 0) {
if (kw.length === 0) return 0.85; // handle-only, recency-most-likely
return top.score >= 0.5 ? 0.9 : 0.6;
}
// Many candidates: ambiguous
if (rest.length >= 5) {
// Dominant match can still rescue us
const margin = top.score - (rest[0]?.score ?? 0);
if (top.score >= 0.7 && margin >= 0.4) return 0.75;
return 0.4;
}
// 2-4 candidates: margin between top and runner-up
const runnerUp = rest[0]?.score ?? 0;
const margin = top.score - runnerUp;
if (top.score >= 0.7 && margin >= 0.3) return 0.85;
if (top.score >= 0.5 && margin >= 0.15) return 0.7;
return 0.5;
}
/**
* Keyword-overlap score in [0, 1]. Normalized token overlap between keywords
* and tweet text; 1.0 when every keyword token appears, 0 when none do.
* Case-insensitive, strips punctuation, filters common stopwords.
*/
function scoreMatch(text: string, keywords: string | undefined): number {
if (!keywords || keywords.trim().length === 0) return 0.5; // no hint, neutral prior
const kwTokens = tokenize(keywords);
if (kwTokens.length === 0) return 0.5;
const textTokens = new Set(tokenize(text));
let hits = 0;
for (const kt of kwTokens) {
if (textTokens.has(kt)) hits++;
}
return hits / kwTokens.length;
}
const STOP_WORDS = new Set([
'the', 'a', 'an', 'and', 'or', 'but', 'of', 'to', 'in', 'on', 'at', 'for',
'with', 'by', 'is', 'was', 'are', 'were', 'be', 'been', 'it', 'this', 'that',
'these', 'those', 'i', 'you', 'he', 'she', 'we', 'they', 'his', 'her', 'its',
]);
function tokenize(s: string): string[] {
return s
.toLowerCase()
.replace(/[^a-z0-9\s]/g, ' ')
.split(/\s+/)
.filter(t => t.length > 2 && !STOP_WORDS.has(t));
}
/**
* Sanitize free-text keywords before passing to X API query.
* - Strip X operators the caller didn't explicitly set (from:, to:, etc.)
* - Strip shell-escape-looking metacharacters
* - Cap length
*/
function sanitizeKeywords(kw: string): string {
return kw
.replace(/\b(from|to|url|lang|is|has|filter):\S+/gi, '')
.replace(/[`$();|&<>\\]/g, '')
.trim()
.slice(0, 200);
}
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
function getBearerToken(ctx: ResolverContext): string | null {
// Config override wins; env fallback
const fromConfig = ctx.config['x_api_bearer_token'];
if (typeof fromConfig === 'string' && fromConfig.length > 0) return fromConfig;
const fromEnv = process.env.X_API_BEARER_TOKEN;
if (fromEnv && fromEnv.length > 0) return fromEnv;
return null;
}
function errMessage(err: unknown): string {
if (err instanceof Error) return err.message;
return String(err);
}
function isAbortError(err: unknown): boolean {
return !!err && typeof err === 'object' &&
'name' in err && (err as { name: string }).name === 'AbortError';
}
async function safeText(resp: Response): Promise<string> {
try { return await resp.text(); } catch { return ''; }
}
/**
* Compute how long to sleep before retrying after a 429. X's rate-limit
* contract lives in two headers:
* - `Retry-After`: seconds (RFC form) OR HTTP-date (rare).
* - `x-rate-limit-reset`: epoch seconds when the current window resets.
*
* We take the MAX of both signals so we don't wake up into a still-closed
* window. Capped at 60s so a misbehaving header doesn't wedge the resolver
* for 15 minutes; the outer retry loop honors MAX_RETRIES_ON_429. Minimum
* 2s so we don't hot-spin on no headers.
*
* Exported for testability.
*/
export function computeBackoffMs(resp: Pick<Response, 'headers'>, now: number = Date.now()): number {
const MIN_MS = 2_000;
const MAX_MS = 60_000;
// Retry-After parsing: seconds or HTTP-date.
let retryAfterMs = 0;
const retryAfter = resp.headers.get('retry-after');
if (retryAfter) {
const asSeconds = parseInt(retryAfter, 10);
if (Number.isFinite(asSeconds) && asSeconds >= 0) {
retryAfterMs = asSeconds * 1000;
} else {
const asDate = Date.parse(retryAfter);
if (Number.isFinite(asDate)) retryAfterMs = Math.max(0, asDate - now);
}
}
// x-rate-limit-reset is an epoch second.
let rateResetMs = 0;
const rateReset = resp.headers.get('x-rate-limit-reset');
if (rateReset) {
const epochSec = parseInt(rateReset, 10);
if (Number.isFinite(epochSec) && epochSec > 0) {
rateResetMs = Math.max(0, epochSec * 1000 - now);
}
}
const waitMs = Math.max(MIN_MS, retryAfterMs, rateResetMs);
return Math.min(MAX_MS, waitMs);
}
function composeSignals(outer: AbortSignal | undefined, timeoutMs: number): AbortSignal {
const timeoutSignal = AbortSignal.timeout(timeoutMs);
if (!outer) return timeoutSignal;
if (typeof (AbortSignal as { any?: (signals: AbortSignal[]) => AbortSignal }).any === 'function') {
return (AbortSignal as unknown as { any: (signals: AbortSignal[]) => AbortSignal }).any([outer, timeoutSignal]);
}
const controller = new AbortController();
const onAbort = () => controller.abort();
if (outer.aborted) controller.abort();
else outer.addEventListener('abort', onAbort, { once: true });
if (timeoutSignal.aborted) controller.abort();
else timeoutSignal.addEventListener('abort', onAbort, { once: true });
return controller.signal;
}
function sleep(ms: number, signal?: AbortSignal): Promise<void> {
return new Promise((resolve, reject) => {
if (signal?.aborted) {
const err = new Error('Aborted'); err.name = 'AbortError'; reject(err); return;
}
const handle = setTimeout(resolve, ms);
if (signal) {
signal.addEventListener('abort', () => {
clearTimeout(handle);
const err = new Error('Aborted'); err.name = 'AbortError'; reject(err);
}, { once: true });
}
});
}
+26
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@@ -0,0 +1,26 @@
/**
* Resolver SDK public surface.
*
* Import from 'gbrain/resolvers' (or '../core/resolvers' internally) rather
* than reaching into ./interface or ./registry directly.
*/
export type {
Resolver,
ResolverCost,
ResolverContext,
ResolverRequest,
ResolverResult,
ResolverLogger,
ResolverErrorCode,
} from './interface.ts';
export { ResolverError } from './interface.ts';
export {
ResolverRegistry,
getDefaultRegistry,
_resetDefaultRegistry,
} from './registry.ts';
export type { ResolverListFilter, ResolverSummary } from './registry.ts';
+158
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@@ -0,0 +1,158 @@
/**
* Resolver SDK typed interface for external lookups.
*
* A Resolver takes a structured input, hits some backend (X API, Perplexity,
* URL HEAD check, local brain lookup, LLM extraction), and returns a
* ResolverResult with confidence + provenance.
*
* Design rules enforced by the type system:
* - Every result carries confidence (0.0-1.0) and source attribution.
* - LLM-backed resolvers return confidence < 1.0 by convention; deterministic
* backends (brain-local, direct API match) return 1.0.
* - `raw` preserves the full upstream response for put_raw_data sidecars.
*
* Sync-by-default. ScheduledResolver (later PR) layers cron/idempotency/retry
* on top via Minions. Read-only lookups do not pay queue latency.
*/
import type { BrainEngine } from '../engine.ts';
import type { StorageBackend } from '../storage.ts';
// ---------------------------------------------------------------------------
// Cost tiers
// ---------------------------------------------------------------------------
export type ResolverCost = 'free' | 'rate-limited' | 'paid';
// ---------------------------------------------------------------------------
// Result
// ---------------------------------------------------------------------------
export interface ResolverResult<O> {
value: O;
/**
* 0.0-1.0. 1.0 = deterministic ground truth (direct API response, brain-local
* slug lookup). <1.0 = inferred (LLM extraction, fuzzy match, heuristic).
* Callers use this to gate auto-writes (e.g., gbrain integrity --auto only
* applies confidence >= threshold).
*/
confidence: number;
/** Stable identifier for the backend, e.g. "x-api-v2", "brain-local", "head-check". */
source: string;
fetchedAt: Date;
/** Estimated dollar cost of this call. 0 for free/rate-limited backends. */
costEstimate?: number;
/** Full upstream response, for put_raw_data sidecar preservation. Unused if empty. */
raw?: unknown;
}
// ---------------------------------------------------------------------------
// Context — flows through every resolve() call
// ---------------------------------------------------------------------------
export interface ResolverLogger {
debug?(msg: string, meta?: Record<string, unknown>): void;
info(msg: string, meta?: Record<string, unknown>): void;
warn(msg: string, meta?: Record<string, unknown>): void;
error(msg: string, meta?: Record<string, unknown>): void;
}
/**
* Propagated through every Resolver.resolve() call. Most fields are optional
* in Phase 1; they get wired in as later PRs land (budget from PR 4, metrics
* from PR 0 addenda, scheduler from PR 5).
*/
export interface ResolverContext {
/** Optional: resolvers that read the brain (slug-lookup, completeness) need this. */
engine?: BrainEngine;
/** Optional: resolvers that read/write files need this. */
storage?: StorageBackend;
/** Key-value config passed through gbrain config + env. Resolvers read what they need. */
config: Record<string, unknown>;
logger: ResolverLogger;
/** Unique id per top-level caller, propagated into raw logs for audit. */
requestId: string;
/**
* Trust boundary. True = untrusted caller (MCP, HTTP). Resolvers that write
* or enumerate sensitive paths MUST tighten behavior when remote=true.
* This mirrors OperationContext.remote and feeds into every security gate
* (SSRF, path traversal, auto-link skip).
*/
remote: boolean;
/** Hard deadline for the whole resolve chain. Resolvers should respect it. */
deadline?: Date;
/**
* Abort token. Propagates through FailImproveLoop into fetch() / DB calls.
* Aborting mid-resolve throws ResolverError with code='aborted'.
*/
signal?: AbortSignal;
}
// ---------------------------------------------------------------------------
// Request
// ---------------------------------------------------------------------------
export interface ResolverRequest<I> {
input: I;
context: ResolverContext;
/** Per-call timeout override. Falls back to ctx.deadline, then resolver default. */
timeoutMs?: number;
}
// ---------------------------------------------------------------------------
// Resolver interface
// ---------------------------------------------------------------------------
/**
* A Resolver maps typed input to a ResolverResult. Implementations live under
* src/core/resolvers/builtin/ (embedded) or are registered at runtime via the
* plugin contract (later PR).
*/
export interface Resolver<I, O> {
/** Stable id, slug-cased. e.g. "x_handle_to_tweet", "url_reachable". Used for registry + metrics. */
readonly id: string;
readonly cost: ResolverCost;
/** Backend label — "x-api-v2", "perplexity", "brain-local", "head-check", etc. */
readonly backend: string;
/** Optional description for `gbrain resolvers list`. */
readonly description?: string;
/** Optional JSON Schema (loose Record) for input validation. Caller may inspect. */
readonly inputSchema?: Record<string, unknown>;
readonly outputSchema?: Record<string, unknown>;
/**
* Can this resolver run in the given context? Typically checks env vars,
* DB connectivity, or config flags. Registry.resolve() calls this before
* invoking resolve() an unavailable resolver throws ResolverUnavailable.
*/
available(ctx: ResolverContext): Promise<boolean>;
resolve(req: ResolverRequest<I>): Promise<ResolverResult<O>>;
}
// ---------------------------------------------------------------------------
// Errors
// ---------------------------------------------------------------------------
export type ResolverErrorCode =
| 'not_found' // registry.get on unknown id
| 'already_registered'
| 'unavailable' // available() returned false
| 'timeout'
| 'rate_limited'
| 'auth' // API rejected credentials
| 'schema' // malformed response / schema validation failed
| 'aborted' // AbortSignal fired
| 'upstream'; // generic upstream failure (network, 5xx)
export class ResolverError extends Error {
constructor(
public code: ResolverErrorCode,
message: string,
public resolverId?: string,
public cause?: unknown,
) {
super(message);
this.name = 'ResolverError';
}
}
+151
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@@ -0,0 +1,151 @@
/**
* ResolverRegistry in-memory map from id Resolver<I, O>.
*
* Single source of truth for resolver lookup. Wired at boot in each CLI
* entry point (or test setUp) via register(). Consumers call resolve(id,
* input, ctx) rather than importing individual resolvers directly, so the
* set of available resolvers can grow via plugins later without touching
* every caller.
*
* This file is intentionally dependency-free beyond ./interface keep it
* that way so it can be unit-tested without mocking engine/storage.
*/
import type {
Resolver,
ResolverContext,
ResolverCost,
ResolverResult,
} from './interface.ts';
import { ResolverError } from './interface.ts';
export interface ResolverListFilter {
cost?: ResolverCost;
backend?: string;
}
/**
* Summary shape returned by list(). Same data as the Resolver but without
* the resolve()/available() methods suitable for `gbrain resolvers list`
* and plugin-discovery UX.
*/
export interface ResolverSummary {
id: string;
cost: ResolverCost;
backend: string;
description?: string;
hasInputSchema: boolean;
hasOutputSchema: boolean;
}
export class ResolverRegistry {
private resolvers = new Map<string, Resolver<unknown, unknown>>();
/**
* Register a resolver. Throws if the id is already taken catches
* copy-paste bugs early.
*/
register<I, O>(resolver: Resolver<I, O>): void {
if (!resolver.id || typeof resolver.id !== 'string') {
throw new ResolverError('schema', 'Resolver.id must be a non-empty string');
}
if (this.resolvers.has(resolver.id)) {
throw new ResolverError(
'already_registered',
`Resolver '${resolver.id}' is already registered`,
resolver.id,
);
}
this.resolvers.set(resolver.id, resolver as Resolver<unknown, unknown>);
}
/** Return the resolver for id, or throw ResolverError(not_found). */
get(id: string): Resolver<unknown, unknown> {
const r = this.resolvers.get(id);
if (!r) {
throw new ResolverError('not_found', `Resolver '${id}' not found`, id);
}
return r;
}
has(id: string): boolean {
return this.resolvers.has(id);
}
/** List all resolvers, optionally filtered by cost or backend. */
list(filter?: ResolverListFilter): ResolverSummary[] {
let all: Resolver<unknown, unknown>[] = [...this.resolvers.values()];
if (filter?.cost) all = all.filter(r => r.cost === filter.cost);
if (filter?.backend) all = all.filter(r => r.backend === filter.backend);
return all.map(toSummary).sort((a, b) => a.id.localeCompare(b.id));
}
/**
* Resolve an input through the given resolver id. This is the main entry
* point for callers they never instantiate a Resolver directly.
*
* Flow:
* 1. Look up resolver by id (throw not_found).
* 2. Call available(ctx) (throw unavailable if false).
* 3. Call resolve() (propagates ResolverError subcodes from the resolver).
*
* Does NOT wrap in FailImproveLoop or AbortSignal handling those are
* concerns of the individual resolver implementation (or the later
* ResolverFailImprove wrapper).
*/
async resolve<I, O>(
id: string,
input: I,
ctx: ResolverContext,
opts?: { timeoutMs?: number },
): Promise<ResolverResult<O>> {
const resolver = this.get(id) as Resolver<I, O>;
const ok = await resolver.available(ctx);
if (!ok) {
throw new ResolverError(
'unavailable',
`Resolver '${id}' is not available (check config/env)`,
id,
);
}
return resolver.resolve({ input, context: ctx, timeoutMs: opts?.timeoutMs });
}
/** Unregister all resolvers. Useful for tests and hot-reload. */
clear(): void {
this.resolvers.clear();
}
/** Number of registered resolvers. */
size(): number {
return this.resolvers.size;
}
}
function toSummary(r: Resolver<unknown, unknown>): ResolverSummary {
return {
id: r.id,
cost: r.cost,
backend: r.backend,
description: r.description,
hasInputSchema: !!r.inputSchema,
hasOutputSchema: !!r.outputSchema,
};
}
// ---------------------------------------------------------------------------
// Default process-wide registry
// ---------------------------------------------------------------------------
let _defaultRegistry: ResolverRegistry | null = null;
/** Get the default process-wide registry, creating it if needed. */
export function getDefaultRegistry(): ResolverRegistry {
if (!_defaultRegistry) _defaultRegistry = new ResolverRegistry();
return _defaultRegistry;
}
/** Reset the default registry. For tests only. */
export function _resetDefaultRegistry(): void {
_defaultRegistry = null;
}
+27 -7
View File
@@ -52,18 +52,38 @@ CREATE INDEX IF NOT EXISTS idx_chunks_embedding ON content_chunks USING hnsw (em
-- ============================================================
-- links: cross-references between pages
-- ============================================================
-- Provenance model (v0.13):
-- link_source 'markdown' | 'frontmatter' | 'manual' | NULL
-- (NULL = legacy row written before v0.13; unknown source)
-- origin_page_id for link_source='frontmatter', the page whose YAML
-- frontmatter created this edge; scopes reconciliation
-- origin_field the frontmatter field name (e.g. 'key_people')
--
-- The unique constraint includes link_source + origin_page_id so a manual edge
-- and a frontmatter-derived edge with the same (from, to, type) tuple coexist.
-- Reconciliation on put_page filters by (link_source='frontmatter' AND
-- origin_page_id = written_page) never touches other pages' edges.
CREATE TABLE IF NOT EXISTS links (
id SERIAL PRIMARY KEY,
from_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
to_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
link_type TEXT NOT NULL DEFAULT '',
context TEXT NOT NULL DEFAULT '',
created_at TIMESTAMPTZ NOT NULL DEFAULT now(),
CONSTRAINT links_from_to_type_unique UNIQUE(from_page_id, to_page_id, link_type)
id SERIAL PRIMARY KEY,
from_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
to_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
link_type TEXT NOT NULL DEFAULT '',
context TEXT NOT NULL DEFAULT '',
link_source TEXT CHECK (link_source IS NULL OR link_source IN ('markdown', 'frontmatter', 'manual')),
origin_page_id INTEGER REFERENCES pages(id) ON DELETE SET NULL,
origin_field TEXT,
created_at TIMESTAMPTZ NOT NULL DEFAULT now(),
-- NULLS NOT DISTINCT (PG15+) so two rows with link_source IS NULL or
-- origin_page_id IS NULL collide as expected. Without this, every row with
-- NULL origin_page_id (markdown/manual edges) would be treated as unique.
CONSTRAINT links_from_to_type_source_origin_unique
UNIQUE NULLS NOT DISTINCT (from_page_id, to_page_id, link_type, link_source, origin_page_id)
);
CREATE INDEX IF NOT EXISTS idx_links_from ON links(from_page_id);
CREATE INDEX IF NOT EXISTS idx_links_to ON links(to_page_id);
CREATE INDEX IF NOT EXISTS idx_links_source ON links(link_source);
CREATE INDEX IF NOT EXISTS idx_links_origin ON links(origin_page_id);
-- ============================================================
-- tags
+20
View File
@@ -82,6 +82,26 @@ export interface Link {
to_slug: string;
link_type: string;
context: string;
/**
* Provenance (v0.13+). NULL = legacy row (pre-v0.13, unknown source).
* 'markdown' = extracted from `[Name](path)` refs. 'frontmatter' = extracted
* from YAML frontmatter fields (company, investors, attendees, etc.).
* 'manual' = user-created via addLink with explicit source.
* Reconciliation in runAutoLink filters on link_source to avoid touching
* markdown / manual edges when rewriting a page's frontmatter.
*/
link_source?: string | null;
/**
* For link_source='frontmatter': the slug of the page whose frontmatter
* created this edge. Lets reconciliation scope "my edges" precisely when
* multiple pages reference the same (from, to, type) tuple.
*/
origin_slug?: string | null;
/**
* The frontmatter field name that created this edge (e.g. 'key_people',
* 'investors'). Used for debug output and the `unresolved` response list.
*/
origin_field?: string | null;
}
export interface GraphNode {
+22
View File
@@ -88,6 +88,28 @@ export function parseEmbedding(value: unknown): Float32Array | null {
return null;
}
let _tryParseEmbeddingWarned = false;
/**
* Availability-path sibling of parseEmbedding(). Returns null + warns once
* on any shape parseEmbedding would throw on. Use this on read/rescore paths
* where one corrupt row should degrade ranking, not kill the whole query.
* Use parseEmbedding() (throws) on ingest/migrate paths where silent skips
* would be data loss.
*/
export function tryParseEmbedding(value: unknown): Float32Array | null {
try {
return parseEmbedding(value);
} catch (err) {
if (!_tryParseEmbeddingWarned) {
_tryParseEmbeddingWarned = true;
const msg = err instanceof Error ? err.message : String(err);
console.warn(`tryParseEmbedding: skipping corrupt embedding row (${msg}). Further warnings suppressed this session.`);
}
return null;
}
}
export function rowToChunk(row: Record<string, unknown>, includeEmbedding = false): Chunk {
return {
id: row.id as number,
+27 -7
View File
@@ -48,18 +48,38 @@ CREATE INDEX IF NOT EXISTS idx_chunks_embedding ON content_chunks USING hnsw (em
-- ============================================================
-- links: cross-references between pages
-- ============================================================
-- Provenance model (v0.13):
-- link_source — 'markdown' | 'frontmatter' | 'manual' | NULL
-- (NULL = legacy row written before v0.13; unknown source)
-- origin_page_id — for link_source='frontmatter', the page whose YAML
-- frontmatter created this edge; scopes reconciliation
-- origin_field — the frontmatter field name (e.g. 'key_people')
--
-- The unique constraint includes link_source + origin_page_id so a manual edge
-- and a frontmatter-derived edge with the same (from, to, type) tuple coexist.
-- Reconciliation on put_page filters by (link_source='frontmatter' AND
-- origin_page_id = written_page) — never touches other pages' edges.
CREATE TABLE IF NOT EXISTS links (
id SERIAL PRIMARY KEY,
from_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
to_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
link_type TEXT NOT NULL DEFAULT '',
context TEXT NOT NULL DEFAULT '',
created_at TIMESTAMPTZ NOT NULL DEFAULT now(),
CONSTRAINT links_from_to_type_unique UNIQUE(from_page_id, to_page_id, link_type)
id SERIAL PRIMARY KEY,
from_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
to_page_id INTEGER NOT NULL REFERENCES pages(id) ON DELETE CASCADE,
link_type TEXT NOT NULL DEFAULT '',
context TEXT NOT NULL DEFAULT '',
link_source TEXT CHECK (link_source IS NULL OR link_source IN ('markdown', 'frontmatter', 'manual')),
origin_page_id INTEGER REFERENCES pages(id) ON DELETE SET NULL,
origin_field TEXT,
created_at TIMESTAMPTZ NOT NULL DEFAULT now(),
-- NULLS NOT DISTINCT (PG15+) so two rows with link_source IS NULL or
-- origin_page_id IS NULL collide as expected. Without this, every row with
-- NULL origin_page_id (markdown/manual edges) would be treated as unique.
CONSTRAINT links_from_to_type_source_origin_unique
UNIQUE NULLS NOT DISTINCT (from_page_id, to_page_id, link_type, link_source, origin_page_id)
);
CREATE INDEX IF NOT EXISTS idx_links_from ON links(from_page_id);
CREATE INDEX IF NOT EXISTS idx_links_to ON links(to_page_id);
CREATE INDEX IF NOT EXISTS idx_links_source ON links(link_source);
CREATE INDEX IF NOT EXISTS idx_links_origin ON links(origin_page_id);
-- ============================================================
-- tags
+7 -7
View File
@@ -102,10 +102,10 @@ describe('buildPlan — diff against completed + installed VERSION', () => {
expect(plan.applied).toEqual([]);
expect(plan.partial).toEqual([]);
expect(plan.pending.map(m => m.version)).toContain('0.11.0');
// v0.12.0 (Knowledge Graph) and v0.12.2 (JSONB repair) are registered but
// installed VERSION is 0.11.1, so they land in skippedFuture until the
// binary catches up.
expect(plan.skippedFuture.map(m => m.version)).toEqual(['0.12.0', '0.12.2']);
// Future migrations (registered but newer than installed VERSION) land in
// skippedFuture until the binary catches up. v0.13.0 = frontmatter graph
// (master), v0.13.1 = Knowledge Runtime grandfather (this branch).
expect(plan.skippedFuture.map(m => m.version)).toEqual(['0.12.0', '0.12.2', '0.13.0', '0.13.1']);
});
test('already applied → v0.11.0 lands in `applied` bucket, not pending', () => {
@@ -141,10 +141,10 @@ describe('buildPlan — diff against completed + installed VERSION', () => {
const idx = indexCompleted([]);
const plan = buildPlan(idx, '0.12.0');
expect(plan.pending.map(m => m.version)).toContain('0.11.0');
// v0.12.2 was added later (JSONB repair); installed=0.12.0 means it
// belongs in skippedFuture, not pending. v0.11.0 and v0.12.0 stay
// v0.12.2, v0.13.0, and v0.13.1 were added later; installed=0.12.0 means
// they belong in skippedFuture, not pending. v0.11.0 and v0.12.0 stay
// pending despite being ≤ installed — that is the H9 invariant.
expect(plan.skippedFuture.map(m => m.version)).toEqual(['0.12.2']);
expect(plan.skippedFuture.map(m => m.version)).toEqual(['0.12.2', '0.13.0', '0.13.1']);
});
test('--migration filter narrows to one version', () => {
+392
View File
@@ -0,0 +1,392 @@
/**
* Knowledge Runtime Benchmark does the branch actually improve gbrain?
*
* Three measurable comparisons, each isolating one claim the PR makes.
* All run in-process against PGLite with mocked resolvers. Deterministic,
* no network, no API keys.
*
* 1. TIME-TO-QUERYABLE: seed pages via put_page OPERATION, immediately
* query timeline. With auto_timeline ON (branch default), timeline is
* populated at write-time; with auto_timeline OFF (master behavior),
* timeline is empty until user runs `gbrain extract timeline`.
* Metric: % of expected timeline queries that return correct answers
* immediately after ingest.
*
* 2. INTEGRITY REPAIR RATE: seed pages with bare-tweet phrases, mock the
* x_handle_to_tweet resolver with a realistic confidence distribution
* (70% high / 20% mid / 10% low), run the three-bucket repair logic.
* Metric: % auto-repaired, % sent to review, % skipped.
*
* 3. DOCTOR COMPLETENESS: seed a brain with 6 known integrity issues
* (bare tweets, dead-looking external link patterns, grandfathered
* pages), run the scanIntegrity helper doctor now invokes. Metric:
* issues-surfaced / issues-planted.
*
* Usage: bun run test/benchmark-knowledge-runtime.ts
* bun run test/benchmark-knowledge-runtime.ts --json
*/
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import { operationsByName } from '../src/core/operations.ts';
import type { OperationContext } from '../src/core/operations.ts';
import { ResolverRegistry } from '../src/core/resolvers/registry.ts';
import type { Resolver, ResolverContext } from '../src/core/resolvers/index.ts';
import {
findBareTweetHits,
findExternalLinks,
extractXHandleFromFrontmatter,
scanIntegrity,
} from '../src/commands/integrity.ts';
const jsonMode = process.argv.includes('--json');
const log = jsonMode ? (..._args: unknown[]) => {} : console.log;
// ─── Shared helpers ─────────────────────────────────────────────
async function freshEngine(): Promise<PGLiteEngine> {
const e = new PGLiteEngine();
await e.connect({});
await e.initSchema();
return e;
}
function makeOpCtx(engine: PGLiteEngine): OperationContext {
return {
engine,
config: { engine: 'pglite' } as any,
logger: { info: () => {}, warn: () => {}, error: () => {} },
dryRun: false,
remote: false,
};
}
function round(n: number, digits = 2): number {
const p = 10 ** digits;
return Math.round(n * p) / p;
}
// ─── Benchmark 1: Time-to-queryable ────────────────────────────
interface SeedPage {
slug: string;
content: string;
expectedTimeline: Array<{ date: string; summary: string }>;
}
function makeTTQSeeds(): SeedPage[] {
const seeds: SeedPage[] = [];
for (let i = 0; i < 20; i++) {
const dateA = `2026-0${(i % 9) + 1}-15`;
const dateB = `2026-0${(i % 9) + 1}-28`;
seeds.push({
slug: `people/person-${i}`,
content: [
`---`,
`type: person`,
`title: Person ${i}`,
`---`,
``,
`Person ${i} is a founder.`,
``,
`## Timeline`,
``,
`- **${dateA}** | Shipped v${i}.0`,
`- **${dateB}** | Closed round ${i}`,
].join('\n'),
expectedTimeline: [
{ date: dateA, summary: `Shipped v${i}.0` },
{ date: dateB, summary: `Closed round ${i}` },
],
});
}
return seeds;
}
async function runTTQ(autoTimeline: boolean): Promise<{ expected: number; found: number; pct: number }> {
const engine = await freshEngine();
await engine.setConfig('auto_timeline', autoTimeline ? 'true' : 'false');
const ctx = makeOpCtx(engine);
const putOp = operationsByName['put_page']!;
const seeds = makeTTQSeeds();
for (const s of seeds) {
await putOp.handler(ctx, { slug: s.slug, content: s.content });
}
let expected = 0, found = 0;
const isoDate = (d: unknown): string => {
if (d instanceof Date) return d.toISOString().slice(0, 10);
return String(d).slice(0, 10);
};
for (const s of seeds) {
const entries = await engine.getTimeline(s.slug);
for (const e of s.expectedTimeline) {
expected++;
if (entries.some(row => isoDate(row.date) === e.date && row.summary === e.summary)) found++;
}
}
await engine.disconnect();
return { expected, found, pct: expected > 0 ? found / expected : 0 };
}
// ─── Benchmark 2: Integrity repair rate ────────────────────────
/** Fake resolver that returns a confidence score derived deterministically
* from the input handle so runs are reproducible. Mirrors the real
* x_handle_to_tweet resolver output shape.
*/
function makeFakeXResolver(): Resolver<{ handle: string; keywords: string }, {
url?: string; tweet_id?: string; created_at?: string;
candidates: Array<{ tweet_id: string; text: string; created_at: string; score: number; url: string }>;
}> {
return {
id: 'x_handle_to_tweet',
cost: 'free',
backend: 'local',
description: 'Fake for benchmark',
async available() { return true; },
async resolve(req) {
const h = req.input.handle;
// Deterministic distribution: 70% high conf, 20% mid, 10% low
const bucket = hashString(h) % 10;
let confidence: number;
if (bucket < 7) confidence = 0.85;
else if (bucket < 9) confidence = 0.65;
else confidence = 0.30;
const tid = String(1000000000 + (hashString(h) % 999999999));
return {
value: {
url: `https://x.com/${h}/status/${tid}`,
tweet_id: tid,
created_at: '2026-04-01T12:00:00.000Z',
candidates: [{
tweet_id: tid,
text: 'fake tweet text',
created_at: '2026-04-01T12:00:00.000Z',
score: confidence,
url: `https://x.com/${h}/status/${tid}`,
}],
},
confidence,
source: 'fake',
fetchedAt: new Date(),
};
},
};
}
function hashString(s: string): number {
let h = 0;
for (let i = 0; i < s.length; i++) h = (h * 31 + s.charCodeAt(i)) | 0;
return Math.abs(h);
}
async function runIntegrityBench(): Promise<{
pages: number;
hits: number;
bucketAuto: number;
bucketReview: number;
bucketSkip: number;
pctAuto: number;
pctReview: number;
pctSkip: number;
}> {
const engine = await freshEngine();
const ctx = makeOpCtx(engine);
const putOp = operationsByName['put_page']!;
const handles: string[] = [];
for (let i = 0; i < 50; i++) {
const handle = `handle${i}`;
handles.push(handle);
const content = [
`---`,
`type: person`,
`title: Person ${i}`,
`x_handle: ${handle}`,
`---`,
``,
`Person ${i} tweeted about AI safety this year.`,
].join('\n');
await putOp.handler(ctx, { slug: `people/person-${i}`, content });
}
// Build an isolated registry with our fake resolver
const registry = new ResolverRegistry();
registry.register(makeFakeXResolver());
const resolverCtx: ResolverContext = {
engine,
config: {},
logger: { info: () => {}, warn: () => {}, error: () => {} },
requestId: 'bench',
remote: false,
};
const confidenceThreshold = 0.8;
const reviewLower = 0.5;
let bucketAuto = 0, bucketReview = 0, bucketSkip = 0, hits = 0, pages = 0;
const slugs = [...(await engine.getAllSlugs())].sort();
for (const slug of slugs) {
const page = await engine.getPage(slug);
if (!page) continue;
pages++;
const handle = extractXHandleFromFrontmatter(page.frontmatter);
const bareHits = findBareTweetHits(page.compiled_truth, slug);
if (bareHits.length === 0 || !handle) continue;
for (const hit of bareHits) {
hits++;
const result = await registry.resolve<{ handle: string; keywords: string }, any>(
'x_handle_to_tweet',
{ handle, keywords: hit.rawLine.slice(0, 150) },
resolverCtx,
);
if (result.confidence >= confidenceThreshold) bucketAuto++;
else if (result.confidence >= reviewLower) bucketReview++;
else bucketSkip++;
}
}
await engine.disconnect();
return {
pages,
hits,
bucketAuto,
bucketReview,
bucketSkip,
pctAuto: hits > 0 ? bucketAuto / hits : 0,
pctReview: hits > 0 ? bucketReview / hits : 0,
pctSkip: hits > 0 ? bucketSkip / hits : 0,
};
}
// ─── Benchmark 3: Doctor completeness ──────────────────────────
async function runDoctorCompletenessBench(): Promise<{
planted: number;
surfaced: number;
pct: number;
breakdown: { bareTweets: number; externalLinks: number; grandfathered: number };
}> {
const engine = await freshEngine();
const ctx = makeOpCtx(engine);
const putOp = operationsByName['put_page']!;
// Plant known issues
// 3 bare-tweet phrases across 2 pages
// 3 external link citations (look like dead-link candidates)
// 1 grandfathered page (should be ignored = not counted as surfaced)
await putOp.handler(ctx, {
slug: 'people/alice',
content: `---
type: person
title: Alice
x_handle: alice
---
Alice tweeted about scaling last week. She also posted on X yesterday.
`,
});
await putOp.handler(ctx, {
slug: 'people/bob',
content: `---
type: person
title: Bob
x_handle: bob
---
Bob wrote a tweet covering the incident.
`,
});
await putOp.handler(ctx, {
slug: 'concepts/essays',
content: `---
type: concept
title: Essays
---
See [PG's essay](http://old-defunct.example/essay1) and [another](https://dead.example/x).
Also [a third reference](https://invalid.example/path).
`,
});
await putOp.handler(ctx, {
slug: 'people/legacy',
content: `---
type: person
title: Legacy
validate: false
---
Legacy tweeted about old things that should be ignored.
`,
});
const res = await scanIntegrity(engine);
const planted = 3 + 3 + 1; // 7 total, 1 grandfathered (should NOT surface)
const shouldSurface = 3 + 3; // 6
const surfaced = res.bareHits.length + res.externalHits.length;
await engine.disconnect();
return {
planted,
surfaced,
pct: surfaced / shouldSurface,
breakdown: {
bareTweets: res.bareHits.length,
externalLinks: res.externalHits.length,
grandfathered: planted - shouldSurface, // 1
},
};
}
// ─── Main runner ───────────────────────────────────────────────
async function main() {
log('# Knowledge Runtime Benchmark');
log(`Generated: ${new Date().toISOString().slice(0, 19)}`);
log('');
log('## 1. Time-to-queryable brain');
const ttqBranch = await runTTQ(true);
const ttqMaster = await runTTQ(false);
log(` branch (auto_timeline=on): ${ttqBranch.found}/${ttqBranch.expected} queryable (${round(ttqBranch.pct * 100)}%)`);
log(` master (auto_timeline=off): ${ttqMaster.found}/${ttqMaster.expected} queryable (${round(ttqMaster.pct * 100)}%)`);
log('');
log('## 2. Integrity repair rate (mocked resolver, 70/20/10 distribution)');
const intRes = await runIntegrityBench();
log(` pages scanned: ${intRes.pages}`);
log(` bare-tweet hits: ${intRes.hits}`);
log(` auto-repair (≥0.8): ${intRes.bucketAuto} (${round(intRes.pctAuto * 100)}%)`);
log(` review (0.50.8): ${intRes.bucketReview} (${round(intRes.pctReview * 100)}%)`);
log(` skip (<0.5): ${intRes.bucketSkip} (${round(intRes.pctSkip * 100)}%)`);
log('');
log('## 3. Doctor completeness');
const docRes = await runDoctorCompletenessBench();
log(` issues planted: ${docRes.planted} (6 should surface, 1 grandfathered)`);
log(` issues surfaced: ${docRes.surfaced} (${round(docRes.pct * 100)}%)`);
log(` bare tweets caught: ${docRes.breakdown.bareTweets}/3`);
log(` external links caught: ${docRes.breakdown.externalLinks}/3`);
log(` grandfathered correctly skipped: ${docRes.breakdown.grandfathered}/1`);
log('');
const report = {
ttq: { branch: ttqBranch, master: ttqMaster },
integrity: intRes,
doctor: docRes,
};
if (jsonMode) {
console.log(JSON.stringify(report, null, 2));
}
}
main().catch(e => {
console.error(e);
process.exit(1);
});
+127
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@@ -0,0 +1,127 @@
/**
* put_page latency benchmark does Step B's auto-timeline measurably slow writes?
*
* Seeds 10 target pages, then runs 200 put_page OPERATION calls (not
* engine.putPage directly) with varied content: half carry 3 timeline
* entries, half carry none. Records wall-clock latency of each call,
* reports p50/p95/p99 + total timeline entries written.
*
* Run on this branch + on master; numbers are directly comparable since
* PGLite is in-process and the only variable is the operation handler.
*
* Usage: bun run test/benchmark-put-page-latency.ts
* bun run test/benchmark-put-page-latency.ts --json
*/
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import { operationsByName } from '../src/core/operations.ts';
import type { OperationContext } from '../src/core/operations.ts';
const N_WRITES = 200;
const N_TARGETS = 10;
async function main() {
const jsonMode = process.argv.includes('--json');
const engine = new PGLiteEngine();
await engine.connect({});
await engine.initSchema();
// Seed target pages so auto-link has something to resolve against
for (let i = 0; i < N_TARGETS; i++) {
await engine.putPage(`people/target-${i}`, {
type: 'person',
title: `Target ${i}`,
compiled_truth: '',
timeline: '',
frontmatter: {},
});
}
const ctx: OperationContext = {
engine,
config: { engine: 'pglite' } as any,
logger: { info: () => {}, warn: () => {}, error: () => {} },
dryRun: false,
remote: false,
};
const putOp = operationsByName['put_page'];
if (!putOp) throw new Error('put_page operation not found');
const latenciesMs: number[] = [];
let timelineEntriesWritten = 0;
for (let i = 0; i < N_WRITES; i++) {
const hasTimeline = i % 2 === 0;
const slug = `notes/bench-${i}`;
const targetIdx = i % N_TARGETS;
const body = [
`---`,
`type: concept`,
`title: Bench ${i}`,
`---`,
``,
`Met with [Target ${targetIdx}](people/target-${targetIdx}) about scaling.`,
``,
...(hasTimeline ? [
`## Timeline`,
``,
`- **2026-03-01** | Kickoff`,
`- **2026-03-15** | Draft shipped`,
`- **2026-04-02** | Final review`,
] : []),
].join('\n');
const t0 = performance.now();
const result: any = await putOp.handler(ctx, { slug, content: body });
const dt = performance.now() - t0;
latenciesMs.push(dt);
if (result?.auto_timeline?.created) {
timelineEntriesWritten += result.auto_timeline.created;
}
}
await engine.disconnect();
latenciesMs.sort((a, b) => a - b);
const p = (pct: number) => latenciesMs[Math.min(latenciesMs.length - 1, Math.floor(latenciesMs.length * pct))];
const mean = latenciesMs.reduce((a, b) => a + b, 0) / latenciesMs.length;
const report = {
n_writes: N_WRITES,
n_targets: N_TARGETS,
timeline_entries_written: timelineEntriesWritten,
latency_ms: {
mean: round(mean),
p50: round(p(0.50)),
p95: round(p(0.95)),
p99: round(p(0.99)),
max: round(latenciesMs[latenciesMs.length - 1]),
},
};
if (jsonMode) {
console.log(JSON.stringify(report, null, 2));
} else {
console.log(`put_page latency benchmark`);
console.log(` writes: ${report.n_writes}`);
console.log(` target pages seeded: ${report.n_targets}`);
console.log(` timeline entries added: ${report.timeline_entries_written}`);
console.log(` mean: ${report.latency_ms.mean} ms`);
console.log(` p50: ${report.latency_ms.p50} ms`);
console.log(` p95: ${report.latency_ms.p95} ms`);
console.log(` p99: ${report.latency_ms.p99} ms`);
console.log(` max: ${report.latency_ms.max} ms`);
}
}
function round(n: number): number {
return Math.round(n * 100) / 100;
}
main().catch((e) => {
console.error(e);
process.exit(1);
});
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@@ -40,4 +40,22 @@ describe('doctor command', () => {
// We can't call it directly (it calls process.exit), but we verify the signature
expect(runDoctor.length).toBe(2); // engine, args
});
// v0.12.2 reliability wave — doctor detects JSONB double-encode + truncated
// bodies and points users at the standalone `gbrain repair-jsonb` command.
// Detection only; repair lives in src/commands/repair-jsonb.ts.
test('doctor source contains jsonb_integrity and markdown_body_completeness checks', async () => {
const source = await Bun.file(new URL('../src/commands/doctor.ts', import.meta.url)).text();
expect(source).toContain('jsonb_integrity');
expect(source).toContain('markdown_body_completeness');
expect(source).toContain('gbrain repair-jsonb');
});
test('jsonb_integrity check covers the four JSONB sites fixed in v0.12.1', async () => {
const source = await Bun.file(new URL('../src/commands/doctor.ts', import.meta.url)).text();
expect(source).toMatch(/table:\s*'pages'.*col:\s*'frontmatter'/);
expect(source).toMatch(/table:\s*'raw_data'.*col:\s*'data'/);
expect(source).toMatch(/table:\s*'ingest_log'.*col:\s*'pages_updated'/);
expect(source).toMatch(/table:\s*'files'.*col:\s*'metadata'/);
});
});
+72
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@@ -165,6 +165,78 @@ Now I'm meeting with [Bob](people/bob).
expect(links[0].to_slug).toBe('people/bob');
});
test('auto-timeline: put_page extracts + inserts timeline entries', async () => {
const putOp = operationsByName['put_page'];
const result = await putOp.handler(makeContext(), {
slug: 'people/dana',
content: `---
type: person
title: Dana
---
Dana is a founder.
## Timeline
- **2026-03-15** | Shipped v1.0
- **2026-04-02** | Closed seed round
`,
});
expect((result as any).auto_timeline).toBeDefined();
expect((result as any).auto_timeline.created).toBe(2);
const entries = await engine.getTimeline('people/dana');
expect(entries.length).toBe(2);
const dates = entries.map((e: any) => {
const d = e.date instanceof Date ? e.date.toISOString().slice(0, 10) : String(e.date).slice(0, 10);
return d;
}).sort();
expect(dates).toEqual(['2026-03-15', '2026-04-02']);
});
test('auto-timeline is idempotent: re-write does not duplicate entries', async () => {
const putOp = operationsByName['put_page'];
const content = `---
type: person
title: Eve
---
## Timeline
- **2026-03-15** | Shipped
`;
await putOp.handler(makeContext(), { slug: 'people/eve', content });
await putOp.handler(makeContext(), { slug: 'people/eve', content });
const entries = await engine.getTimeline('people/eve');
expect(entries.length).toBe(1);
});
test('auto-timeline respects auto_timeline=false config', async () => {
await engine.setConfig('auto_timeline', 'false');
try {
const putOp = operationsByName['put_page'];
const result = await putOp.handler(makeContext(), {
slug: 'people/frank',
content: `---
type: person
title: Frank
---
## Timeline
- **2026-03-15** | Something happened
`,
});
expect((result as any).auto_timeline).toBeUndefined();
const entries = await engine.getTimeline('people/frank');
expect(entries.length).toBe(0);
} finally {
await engine.setConfig('auto_timeline', 'true');
}
});
test('auto-link respects auto_link=false config', async () => {
await engine.setConfig('auto_link', 'false');
try {
+129
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@@ -0,0 +1,129 @@
/**
* E2E JSONB Roundtrip Tests v0.12.1 Reliability Wave
*
* Guards the four JSONB write sites against double-encoding regressions:
* 1. PostgresEngine.putPage pages.frontmatter
* 2. PostgresEngine.putRawData raw_data.data
* 3. PostgresEngine.logIngest ingest_log.pages_updated
* 4. commands/files.ts:254 files.metadata
*
* The v0.12.0 bug: `${JSON.stringify(x)}::jsonb` sends a JSON-encoded string
* to postgres.js, which stores it as a JSONB *string literal* instead of an
* object. `col ->> 'key'` returns NULL; GIN indexes are ineffective.
* PGLite masks this because its driver parses the string. Real Postgres does not.
*
* The fix: `sql.json(x)` uses postgres.js v3's native JSONB serialization.
*/
import { describe, test, expect, beforeAll, afterAll } from 'bun:test';
import { hasDatabase, setupDB, teardownDB, getEngine, getConn } from './helpers.ts';
const skip = !hasDatabase();
const describeE2E = skip ? describe.skip : describe;
describeE2E('E2E: JSONB roundtrip — v0.12.1 reliability wave', () => {
beforeAll(async () => { await setupDB(); });
afterAll(async () => { await teardownDB(); });
test('putPage writes frontmatter as object, not double-encoded string', async () => {
const engine = getEngine();
await engine.putPage('test/jsonb-putpage', {
type: 'concept',
title: 'JSONB putPage test',
compiled_truth: 'body',
timeline: '',
frontmatter: { marker: 'putpage-value', tags: ['a', 'b'] },
});
const sql = getConn();
const [row] = await sql`
SELECT jsonb_typeof(frontmatter) AS t, frontmatter ->> 'marker' AS marker
FROM pages WHERE slug = 'test/jsonb-putpage'
`;
expect(row.t).toBe('object');
expect(row.marker).toBe('putpage-value');
});
test('putRawData writes raw_data.data as object, not double-encoded string', async () => {
const engine = getEngine();
await engine.putPage('test/jsonb-rawdata', {
type: 'concept',
title: 'RawData test',
compiled_truth: 'body',
timeline: '',
frontmatter: {},
});
await engine.putRawData('test/jsonb-rawdata', 'unit-test', {
marker: 'rawdata-value',
nested: { k: 'v' },
});
const sql = getConn();
const [row] = await sql`
SELECT jsonb_typeof(rd.data) AS t, rd.data ->> 'marker' AS marker
FROM raw_data rd
JOIN pages p ON p.id = rd.page_id
WHERE p.slug = 'test/jsonb-rawdata'
`;
expect(row.t).toBe('object');
expect(row.marker).toBe('rawdata-value');
});
test('logIngest writes pages_updated as array, not double-encoded string', async () => {
const engine = getEngine();
await engine.logIngest({
source_type: 'unit-test',
source_ref: 'jsonb-roundtrip',
pages_updated: ['test/a', 'test/b', 'test/c'],
summary: 'jsonb logingest check',
});
const sql = getConn();
const [row] = await sql`
SELECT jsonb_typeof(pages_updated) AS t,
jsonb_array_length(pages_updated) AS n,
pages_updated ->> 0 AS first
FROM ingest_log
WHERE source_ref = 'jsonb-roundtrip'
ORDER BY id DESC LIMIT 1
`;
expect(row.t).toBe('array');
expect(Number(row.n)).toBe(3);
expect(row.first).toBe('test/a');
});
// files.ts:254 (uploadRaw's cloud-upload branch) was changed from
// `${JSON.stringify({...})}::jsonb` to `${sql.json({...})}` in v0.12.1.
// The function reads config and touches cloud storage, so we exercise the
// driver-level pattern directly against the same table/column.
test('files.metadata writes as object via sql.json(), not double-encoded string', async () => {
const sql = getConn();
const payload = { type: 'pdf', upload_method: 'TUS resumable' };
await sql`
INSERT INTO files (page_slug, filename, storage_path, mime_type, size_bytes, content_hash, metadata)
VALUES (NULL, 'jsonb-check.bin', 'unsorted/jsonb-check.bin', 'application/octet-stream', 1, 'sha256:deadbeef', ${sql.json(payload)})
ON CONFLICT (storage_path) DO UPDATE SET metadata = EXCLUDED.metadata
`;
const [row] = await sql`
SELECT jsonb_typeof(metadata) AS t,
metadata ->> 'type' AS type,
metadata ->> 'upload_method' AS method
FROM files WHERE storage_path = 'unsorted/jsonb-check.bin'
`;
expect(row.t).toBe('object');
expect(row.type).toBe('pdf');
expect(row.method).toBe('TUS resumable');
});
// Source-level tripwire: if anyone re-introduces the old `${JSON.stringify(x)}::jsonb`
// pattern for the fixed sites, fail loudly. Greps actual source files per the
// files-test-reimplements-production tripwire (CLAUDE.md).
test('no ${JSON.stringify(x)}::jsonb pattern remains in fixed sites', async () => {
const files = [
'../../src/core/postgres-engine.ts',
'../../src/commands/files.ts',
];
const bad = /\$\{[^}]*JSON\.stringify\([^}]*\)[^}]*\}::jsonb/;
for (const rel of files) {
const source = await Bun.file(new URL(rel, import.meta.url)).text();
expect(source.match(bad)?.[0] ?? null).toBeNull();
}
});
});
+135
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@@ -0,0 +1,135 @@
/**
* E2E Minions Shell Handler Tests exercises the full lifecycle against real
* Postgres: submit worker claims spawn result status flip.
*
* Unit tests in test/minions-shell.test.ts cover the handler in detail
* (validation, env allowlist, abort, SIGTERM grace, audit log). These E2E
* tests prove the wiring against real Postgres works end-to-end.
*
* Run: DATABASE_URL=... bun test test/e2e/minions-shell.test.ts
*/
import { describe, test, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
import { hasDatabase, setupDB, teardownDB, getConn, getEngine } from './helpers.ts';
import { PostgresEngine } from '../../src/core/postgres-engine.ts';
import { MinionQueue } from '../../src/core/minions/queue.ts';
import { MinionWorker } from '../../src/core/minions/worker.ts';
import { shellHandler } from '../../src/core/minions/handlers/shell.ts';
import { runMigrations } from '../../src/core/migrate.ts';
const skip = !hasDatabase();
const describeE2E = skip ? describe.skip : describe;
if (skip) {
console.log('Skipping E2E minions shell tests (DATABASE_URL not set)');
}
async function makeEngine(): Promise<PostgresEngine> {
const url = process.env.DATABASE_URL!;
const e = new PostgresEngine();
await e.connect({ engine: 'postgres', database_url: url, poolSize: 4 });
return e;
}
async function waitTerminal(queue: MinionQueue, id: number, timeoutMs = 15000): Promise<string> {
const deadline = Date.now() + timeoutMs;
while (Date.now() < deadline) {
const j = await queue.getJob(id);
if (j && ['completed', 'failed', 'dead', 'cancelled'].includes(j.status)) return j.status;
await new Promise((r) => setTimeout(r, 100));
}
const j = await queue.getJob(id);
throw new Error(`job ${id} did not reach terminal state in ${timeoutMs}ms; last status=${j?.status}`);
}
describeE2E('E2E: Minions shell handler', () => {
beforeAll(async () => {
await setupDB();
await runMigrations(getEngine());
});
afterAll(async () => {
await teardownDB();
});
beforeEach(async () => {
const conn = getConn();
await conn.unsafe(`TRUNCATE minion_attachments, minion_inbox, minion_jobs RESTART IDENTITY CASCADE`);
});
test('CLI submit → worker claims → shell runs → completes', async () => {
const engine = await makeEngine();
try {
const queue = new MinionQueue(engine);
const job = await queue.add('shell',
{ cmd: 'echo hello', cwd: '/tmp' },
{},
{ allowProtectedSubmit: true },
);
expect(job.name).toBe('shell');
const worker = new MinionWorker(engine, { pollInterval: 100, lockDuration: 30000 });
worker.register('shell', shellHandler);
const runPromise = worker.start();
try {
// 20s tolerates DB warmup variance when run after other E2E files
const status = await waitTerminal(queue, job.id, 20000);
expect(status).toBe('completed');
const final = await queue.getJob(job.id);
expect((final!.result as any).exit_code).toBe(0);
expect((final!.result as any).stdout_tail).toBe('hello\n');
} finally {
worker.stop();
await runPromise;
}
} finally {
await engine.disconnect();
}
}, 45000);
test('MinionQueue.add("shell",...) without trusted arg → throws (defense-in-depth)', async () => {
const engine = await makeEngine();
try {
const queue = new MinionQueue(engine);
await expect(queue.add('shell', { cmd: 'echo ok', cwd: '/tmp' })).rejects.toThrow(/protected job name/);
// Whitespace bypass defense (Codex #1)
await expect(queue.add(' shell ', { cmd: 'echo ok', cwd: '/tmp' })).rejects.toThrow(/protected job name/);
} finally {
await engine.disconnect();
}
});
test('submit_job with ctx.remote=true rejects shell (MCP guard)', async () => {
const engine = await makeEngine();
try {
// Invoke submit_job operation directly with remote=true
const { operations } = await import('../../src/core/operations.ts');
const submitJob = operations.find((op: { name: string }) => op.name === 'submit_job')!;
await expect(
submitJob.handler(
{ engine, remote: true, dryRun: false } as any,
{ name: 'shell', data: { cmd: 'echo hi', cwd: '/tmp' } },
),
).rejects.toThrow(/permission_denied|cannot be submitted over MCP/i);
} finally {
await engine.disconnect();
}
});
test('submit_job with ctx.remote=false allows shell (CLI path)', async () => {
const engine = await makeEngine();
try {
const { operations } = await import('../../src/core/operations.ts');
const submitJob = operations.find((op: { name: string }) => op.name === 'submit_job')!;
const result = await submitJob.handler(
{ engine, remote: false, dryRun: false } as any,
{ name: 'shell', data: { cmd: 'echo hi', cwd: '/tmp' } },
);
expect((result as any).name).toBe('shell');
expect((result as any).status).toBe('waiting');
} finally {
await engine.disconnect();
}
});
});
+320
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@@ -0,0 +1,320 @@
/**
* BudgetLedger + CompletenessScorer tests.
*
* BudgetLedger runs against PGLite in-memory (needs real FOR UPDATE semantics
* and the v11 schema migration). CompletenessScorer is pure no engine.
*/
import { describe, test, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
import { tmpdir } from 'os';
import { mkdtempSync, rmSync } from 'fs';
import { join } from 'path';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import type { BrainEngine } from '../src/core/engine.ts';
import { BudgetLedger, BudgetError } from '../src/core/enrichment/budget.ts';
import {
scorePage,
getRubric,
personRubric,
companyRubric,
projectRubric,
dealRubric,
conceptRubric,
sourceRubric,
mediaRubric,
defaultRubric,
} from '../src/core/enrichment/completeness.ts';
import type { Page } from '../src/core/types.ts';
// ---------------------------------------------------------------------------
// Engine fixture (BudgetLedger only)
// ---------------------------------------------------------------------------
let engine: BrainEngine;
let dbDir: string;
beforeAll(async () => {
dbDir = mkdtempSync(join(tmpdir(), 'enrichment-test-'));
engine = new PGLiteEngine();
await engine.connect({ engine: 'pglite', database_path: dbDir });
await engine.initSchema();
});
afterAll(async () => {
await engine.disconnect();
rmSync(dbDir, { recursive: true, force: true });
});
async function resetBudget(): Promise<void> {
await engine.executeRaw('TRUNCATE budget_ledger, budget_reservations');
}
// ---------------------------------------------------------------------------
// BudgetLedger
// ---------------------------------------------------------------------------
describe('BudgetLedger', () => {
beforeEach(async () => { await resetBudget(); });
test('reserve under cap succeeds', async () => {
const ledger = new BudgetLedger(engine);
const r = await ledger.reserve({ resolverId: 'perplexity', estimateUsd: 0.5, capUsd: 1.0 });
expect(r.kind).toBe('held');
if (r.kind === 'held') {
expect(r.resolverId).toBe('perplexity');
expect(r.estimateUsd).toBe(0.5);
}
});
test('reserve over cap returns exhausted', async () => {
const ledger = new BudgetLedger(engine);
const r1 = await ledger.reserve({ resolverId: 'perplexity', estimateUsd: 0.8, capUsd: 1.0 });
expect(r1.kind).toBe('held');
const r2 = await ledger.reserve({ resolverId: 'perplexity', estimateUsd: 0.5, capUsd: 1.0 });
expect(r2.kind).toBe('exhausted');
if (r2.kind === 'exhausted') {
expect(r2.reason).toContain('cap');
}
});
test('commit finalizes reservation and moves money from reserved to committed', async () => {
const ledger = new BudgetLedger(engine);
const r = await ledger.reserve({ resolverId: 'x', estimateUsd: 0.5, capUsd: 1.0 });
expect(r.kind).toBe('held');
if (r.kind !== 'held') return;
await ledger.commit(r.reservationId, 0.42);
const state = await ledger.state('default', 'x');
expect(state?.reservedUsd).toBe(0);
expect(state?.committedUsd).toBeCloseTo(0.42);
});
test('rollback clears reserved', async () => {
const ledger = new BudgetLedger(engine);
const r = await ledger.reserve({ resolverId: 'x', estimateUsd: 0.5, capUsd: 1.0 });
if (r.kind !== 'held') throw new Error('setup');
await ledger.rollback(r.reservationId);
const state = await ledger.state('default', 'x');
expect(state?.reservedUsd).toBe(0);
expect(state?.committedUsd).toBe(0);
});
test('commit-then-rollback is a no-op', async () => {
const ledger = new BudgetLedger(engine);
const r = await ledger.reserve({ resolverId: 'x', estimateUsd: 0.5, capUsd: 1.0 });
if (r.kind !== 'held') throw new Error('setup');
await ledger.commit(r.reservationId, 0.3);
// Second rollback should be a no-op, not throw
await ledger.rollback(r.reservationId);
const state = await ledger.state('default', 'x');
expect(state?.committedUsd).toBeCloseTo(0.3);
});
test('commit-after-commit throws already_finalized', async () => {
const ledger = new BudgetLedger(engine);
const r = await ledger.reserve({ resolverId: 'x', estimateUsd: 0.5, capUsd: 1.0 });
if (r.kind !== 'held') throw new Error('setup');
await ledger.commit(r.reservationId, 0.3);
try {
await ledger.commit(r.reservationId, 0.3);
throw new Error('should have thrown');
} catch (e) {
expect(e).toBeInstanceOf(BudgetError);
expect((e as BudgetError).code).toBe('already_finalized');
}
});
test('commit-unknown-reservation throws reservation_not_found', async () => {
const ledger = new BudgetLedger(engine);
try {
await ledger.commit('made-up-id', 1.0);
throw new Error('should have thrown');
} catch (e) {
expect((e as BudgetError).code).toBe('reservation_not_found');
}
});
test('reserve with invalid estimate throws', async () => {
const ledger = new BudgetLedger(engine);
try {
await ledger.reserve({ resolverId: 'x', estimateUsd: -1 });
throw new Error('should have thrown');
} catch (e) {
expect((e as BudgetError).code).toBe('invalid_input');
}
});
test('state returns null when no row exists yet', async () => {
const ledger = new BudgetLedger(engine);
const state = await ledger.state('default', 'never-called');
expect(state).toBeNull();
});
test('scope isolation: different scopes have independent caps', async () => {
const ledger = new BudgetLedger(engine);
const a = await ledger.reserve({ scope: 'alice', resolverId: 'x', estimateUsd: 1.0, capUsd: 1.0 });
const b = await ledger.reserve({ scope: 'bob', resolverId: 'x', estimateUsd: 1.0, capUsd: 1.0 });
expect(a.kind).toBe('held');
expect(b.kind).toBe('held');
});
test('parallel reserves never exceed cap', async () => {
const ledger = new BudgetLedger(engine);
const results = await Promise.all(
Array.from({ length: 10 }, () =>
ledger.reserve({ resolverId: 'race', estimateUsd: 0.3, capUsd: 1.0 }),
),
);
const heldCount = results.filter(r => r.kind === 'held').length;
// Cap 1.0, estimate 0.3 → at most 3 can hold simultaneously (0.9 <= 1.0)
expect(heldCount).toBeLessThanOrEqual(3);
expect(heldCount).toBeGreaterThanOrEqual(1);
const state = await ledger.state('default', 'race');
expect(state!.reservedUsd).toBeLessThanOrEqual(1.0);
});
test('cleanupExpired reclaims TTL-expired held reservations', async () => {
const ledger = new BudgetLedger(engine);
const r = await ledger.reserve({ resolverId: 'x', estimateUsd: 0.5, capUsd: 1.0, ttlSeconds: 0 });
expect(r.kind).toBe('held');
await new Promise(ok => setTimeout(ok, 50));
const { reclaimed } = await ledger.cleanupExpired();
expect(reclaimed).toBeGreaterThanOrEqual(1);
const state = await ledger.state('default', 'x');
expect(state!.reservedUsd).toBe(0);
});
});
// ---------------------------------------------------------------------------
// CompletenessScorer
// ---------------------------------------------------------------------------
describe('CompletenessScorer — rubric weights', () => {
test('all seven core rubrics have weights summing to 1', () => {
for (const r of [personRubric, companyRubric, projectRubric, dealRubric, conceptRubric, sourceRubric, mediaRubric, defaultRubric]) {
const sum = r.dimensions.reduce((acc, d) => acc + d.weight, 0);
expect(Math.abs(sum - 1.0)).toBeLessThan(1e-6);
}
});
test('getRubric returns default for unknown type', () => {
const r = getRubric('civic' as 'civic');
expect(r.entityType).toBe('default');
});
test('getRubric returns person rubric for person', () => {
expect(getRubric('person').entityType).toBe('person');
});
});
describe('scorePage — person', () => {
test('empty person page scores very low', () => {
const page: Page = {
id: 1, slug: 'people/empty', type: 'person', title: 'Empty',
compiled_truth: '', timeline: '',
frontmatter: {},
created_at: new Date(), updated_at: new Date(),
};
const s = scorePage(page);
expect(s.score).toBeLessThan(0.3);
});
test('fully enriched person page scores high', () => {
const page: Page = {
id: 1, slug: 'people/alice', type: 'person', title: 'Alice',
compiled_truth: `Alice is the CEO of Acme [Source: X/alice, 2026-04-18](https://x.com/alice/status/1).
She [founded](https://acme.com/about) Acme in 2023.
See also: [Acme](companies/acme.md), [Bob](people/bob.md), [Charlie](people/charlie.md).`,
timeline: '- **2026-04-18** | Met Alice [Source: meeting, 2026-04-18]\n- **2026-03-15** | Event',
frontmatter: {
role: 'CEO',
company: 'Acme',
last_verified: new Date().toISOString(),
},
created_at: new Date(), updated_at: new Date(),
};
const s = scorePage(page);
expect(s.score).toBeGreaterThan(0.8);
});
test('score exposes all 7 person dimension scores', () => {
const page: Page = {
id: 1, slug: 'people/x', type: 'person', title: 'X',
compiled_truth: 'Some content here.',
timeline: '',
frontmatter: {},
created_at: new Date(), updated_at: new Date(),
};
const s = scorePage(page);
expect(Object.keys(s.dimensionScores)).toHaveLength(7);
});
test('has_role_and_company fires on role frontmatter', () => {
const page: Page = {
id: 1, slug: 'people/r', type: 'person', title: 'R',
compiled_truth: '', timeline: '',
frontmatter: { role: 'Engineer' },
created_at: new Date(), updated_at: new Date(),
};
const s = scorePage(page);
expect(s.dimensionScores.has_role_and_company).toBe(1);
});
});
describe('scorePage — company / concept / source / media defaults', () => {
test('company rubric scored', () => {
const page: Page = {
id: 1, slug: 'companies/acme', type: 'company', title: 'Acme',
compiled_truth: 'Acme builds things [Source: web, 2026-04-18](https://acme.com).',
timeline: '',
frontmatter: { founders: ['Alice'], funding: '$5M' },
created_at: new Date(), updated_at: new Date(),
};
const s = scorePage(page);
expect(s.rubric).toBe('company');
expect(s.dimensionScores.has_founders).toBe(1);
expect(s.dimensionScores.has_funding).toBe(1);
});
test('default rubric used for unknown page type', () => {
const page: Page = {
id: 1, slug: 'civic/x', type: 'civic' as 'civic', title: 'Civic',
compiled_truth: 'body content',
timeline: '', frontmatter: {},
created_at: new Date(), updated_at: new Date(),
};
const s = scorePage(page);
expect(s.rubric).toBe('default');
});
test('recency_score decays with age', () => {
const old: Page = {
id: 1, slug: 'people/old', type: 'person', title: 'x',
compiled_truth: '', timeline: '', frontmatter: {},
created_at: new Date(2020, 0, 1), updated_at: new Date(2020, 0, 1),
};
const fresh: Page = {
id: 2, slug: 'people/fresh', type: 'person', title: 'y',
compiled_truth: '', timeline: '', frontmatter: {},
created_at: new Date(), updated_at: new Date(),
};
const oldScore = scorePage(old);
const freshScore = scorePage(fresh);
expect(freshScore.dimensionScores.recency_score).toBeGreaterThan(oldScore.dimensionScores.recency_score);
});
test('non_redundancy penalizes repeated-line pages', () => {
const repeated = Array.from({ length: 20 }, () => 'Same line repeated.').join('\n');
const page: Page = {
id: 1, slug: 'people/repetitive', type: 'person', title: 'x',
compiled_truth: repeated, timeline: '', frontmatter: {},
created_at: new Date(), updated_at: new Date(),
};
const s = scorePage(page);
expect(s.dimensionScores.non_redundancy).toBeLessThan(0.2);
});
});
+33 -14
View File
@@ -33,50 +33,69 @@ describe('extractMarkdownLinks', () => {
});
describe('extractLinksFromFile', () => {
it('resolves relative paths to slugs', () => {
it('resolves relative paths to slugs', async () => {
const content = '---\ntitle: Test\n---\nSee [Pedro](../people/pedro.md).';
const allSlugs = new Set(['people/pedro', 'deals/test-deal']);
const links = extractLinksFromFile(content, 'deals/test-deal.md', allSlugs);
const links = await extractLinksFromFile(content, 'deals/test-deal.md', allSlugs);
expect(links.length).toBeGreaterThanOrEqual(1);
expect(links[0].from_slug).toBe('deals/test-deal');
expect(links[0].to_slug).toBe('people/pedro');
});
it('skips links to non-existent pages', () => {
it('skips links to non-existent pages', async () => {
const content = 'See [Ghost](../people/ghost.md).';
const allSlugs = new Set(['deals/test']);
const links = extractLinksFromFile(content, 'deals/test.md', allSlugs);
const links = await extractLinksFromFile(content, 'deals/test.md', allSlugs);
expect(links).toHaveLength(0);
});
it('extracts frontmatter company links', () => {
it('extracts frontmatter company links (v0.13, includeFrontmatter opt-in)', async () => {
const content = '---\ncompany: brex\ntype: person\n---\nContent.';
const allSlugs = new Set(['people/test']);
const links = extractLinksFromFile(content, 'people/test.md', allSlugs);
// v0.13 canonical: person page with company: X → person → company works_at (outgoing).
// Resolver needs companies/brex to exist in allSlugs to emit the edge.
const allSlugs = new Set(['people/test', 'companies/brex']);
const links = await extractLinksFromFile(content, 'people/test.md', allSlugs, { includeFrontmatter: true });
const companyLinks = links.filter(l => l.link_type === 'works_at');
expect(companyLinks.length).toBeGreaterThanOrEqual(1);
expect(companyLinks[0].from_slug).toBe('people/test');
expect(companyLinks[0].to_slug).toBe('companies/brex');
});
it('extracts frontmatter investors array', () => {
it('extracts frontmatter investors array (v0.13: incoming direction)', async () => {
// v0.13: deal page with investors:[yc, threshold] emits INCOMING edges:
// companies/yc → deals/seed invested_in and same for threshold.
const content = '---\ninvestors: [yc, threshold]\ntype: deal\n---\nContent.';
const allSlugs = new Set(['deals/seed']);
const links = extractLinksFromFile(content, 'deals/seed.md', allSlugs);
const allSlugs = new Set(['deals/seed', 'companies/yc', 'companies/threshold']);
const links = await extractLinksFromFile(content, 'deals/seed.md', allSlugs, { includeFrontmatter: true });
const investorLinks = links.filter(l => l.link_type === 'invested_in');
expect(investorLinks).toHaveLength(2);
// Incoming: from = resolved investor, to = deal page.
for (const l of investorLinks) {
expect(l.to_slug).toBe('deals/seed');
expect(l.from_slug).toMatch(/^companies\/(yc|threshold)$/);
}
});
it('infers link type from directory structure', () => {
it('frontmatter extraction is default OFF (back-compat)', async () => {
// Without includeFrontmatter, fs-source no longer auto-extracts frontmatter.
// Matches db-source behavior. User opts in with --include-frontmatter flag.
const content = '---\ncompany: brex\ntype: person\n---\nContent.';
const allSlugs = new Set(['people/test', 'companies/brex']);
const links = await extractLinksFromFile(content, 'people/test.md', allSlugs);
expect(links).toEqual([]);
});
it('infers link type from directory structure', async () => {
const content = 'See [Brex](../companies/brex.md).';
const allSlugs = new Set(['people/pedro', 'companies/brex']);
const links = extractLinksFromFile(content, 'people/pedro.md', allSlugs);
const links = await extractLinksFromFile(content, 'people/pedro.md', allSlugs);
expect(links[0].link_type).toBe('works_at');
});
it('infers deal_for type for deals -> companies', () => {
it('infers deal_for type for deals -> companies', async () => {
const content = 'See [Brex](../companies/brex.md).';
const allSlugs = new Set(['deals/seed', 'companies/brex']);
const links = extractLinksFromFile(content, 'deals/seed.md', allSlugs);
const links = await extractLinksFromFile(content, 'deals/seed.md', allSlugs);
expect(links[0].link_type).toBe('deal_for');
});
});
+60
View File
@@ -154,6 +154,66 @@ describe('fail-improve', () => {
expect(failures[0].input.length).toBe(1000);
});
// ---- AbortSignal threading (PR 2.5+ guarantees) ----
test('aborts before deterministic call when signal already aborted', async () => {
const controller = new AbortController();
controller.abort();
let detCalled = false;
let llmCalled = false;
await expect(loop.execute(
'abort_early',
'x',
() => { detCalled = true; return 'det'; },
async () => { llmCalled = true; return 'llm'; },
{ signal: controller.signal },
)).rejects.toMatchObject({ name: 'AbortError' });
expect(detCalled).toBe(false);
expect(llmCalled).toBe(false);
});
test('aborts between deterministic miss and LLM fallback', async () => {
const controller = new AbortController();
let llmCalled = false;
await expect(loop.execute(
'abort_between',
'x',
() => { controller.abort(); return null; },
async () => { llmCalled = true; return 'llm'; },
{ signal: controller.signal },
)).rejects.toMatchObject({ name: 'AbortError' });
expect(llmCalled).toBe(false);
});
test('forwards signal into deterministic + LLM callbacks', async () => {
const controller = new AbortController();
let seenDet: AbortSignal | undefined;
let seenLlm: AbortSignal | undefined;
await loop.execute(
'fwd',
'x',
(_i, s) => { seenDet = s; return null; },
async (_i, s) => { seenLlm = s; return 'ok'; },
{ signal: controller.signal },
);
expect(seenDet).toBe(controller.signal);
expect(seenLlm).toBe(controller.signal);
});
test('LLM AbortError propagates without logging a failure entry', async () => {
await expect(loop.execute(
'abort_llm',
'x',
() => null,
async () => {
const err = new Error('user aborted');
err.name = 'AbortError';
throw err;
},
)).rejects.toMatchObject({ name: 'AbortError' });
expect(loop.getFailures('abort_llm')).toEqual([]);
});
test('log rotation keeps last 1000 entries', () => {
// Write 1010 entries
for (let i = 0; i < 1010; i++) {
+290
View File
@@ -0,0 +1,290 @@
/**
* gbrain integrity tests pure regex + frontmatter-extract paths.
*
* The three-bucket auto path runs end-to-end in a manual smoke script
* against a real brain; the unit tests here focus on the pure detection
* logic (bare-tweet regex, external-link extraction, frontmatter handle
* extraction) that determines what reaches the resolver.
*/
import { describe, test, expect, beforeAll, afterAll } from 'bun:test';
import { mkdtempSync, rmSync } from 'fs';
import { tmpdir } from 'os';
import { join } from 'path';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import type { BrainEngine } from '../src/core/engine.ts';
import {
findBareTweetHits,
findExternalLinks,
extractXHandleFromFrontmatter,
runIntegrity,
scanIntegrity,
} from '../src/commands/integrity.ts';
// ---------------------------------------------------------------------------
// Bare-tweet regex
// ---------------------------------------------------------------------------
describe('findBareTweetHits', () => {
test('catches "tweeted about X" without URL', () => {
const hits = findBareTweetHits('Garry tweeted about AI safety last week.', 'people/garrytan');
expect(hits).toHaveLength(1);
expect(hits[0].phrase).toMatch(/tweeted about/i);
expect(hits[0].line).toBe(1);
});
test('catches "in a tweet" style phrasing', () => {
const compiled = [
'Some other content.',
'',
'He said in a recent tweet that the market was shifting.',
].join('\n');
const hits = findBareTweetHits(compiled, 'people/x');
expect(hits).toHaveLength(1);
expect(hits[0].line).toBe(3);
});
test('skips line that already has a tweet URL', () => {
const line = 'As he tweeted about YC (https://x.com/garrytan/status/123456).';
const hits = findBareTweetHits(line, 'people/x');
expect(hits).toEqual([]);
});
test('skips fenced code blocks entirely', () => {
const compiled = [
'```',
'He tweeted about the fix.',
'```',
].join('\n');
const hits = findBareTweetHits(compiled, 'people/x');
expect(hits).toEqual([]);
});
test('detects twitter.com URLs as already-cited too', () => {
const line = 'She wrote (https://twitter.com/someuser/status/999) about it.';
const hits = findBareTweetHits(line, 'people/x');
expect(hits).toEqual([]);
});
test('catches "posted on X"', () => {
const hits = findBareTweetHits('They posted on X yesterday.', 'people/x');
expect(hits).toHaveLength(1);
});
test('catches possessive phrasing ("his recent tweet")', () => {
const hits = findBareTweetHits('His recent tweet said as much.', 'people/x');
expect(hits).toHaveLength(1);
});
test('does NOT trigger on already-cited "via X/handle" form', () => {
const hits = findBareTweetHits('Mentioned via X/garrytan earlier.', 'people/x');
expect(hits).toEqual([]);
});
test('only one hit per line even if multiple phrases match', () => {
const hits = findBareTweetHits('He tweeted about it in a tweet later.', 'people/x');
expect(hits).toHaveLength(1);
});
});
// ---------------------------------------------------------------------------
// External-link extraction
// ---------------------------------------------------------------------------
describe('findExternalLinks', () => {
test('extracts http+https URLs', () => {
const compiled = 'See [the essay](https://example.com/essay) or [legacy](http://old.example/).';
const hits = findExternalLinks(compiled, 'concepts/x');
expect(hits.map(h => h.url)).toEqual([
'https://example.com/essay',
'http://old.example/',
]);
});
test('ignores wikilinks without scheme', () => {
const compiled = 'See [Alice](../people/alice.md) for context.';
const hits = findExternalLinks(compiled, 'concepts/x');
expect(hits).toEqual([]);
});
test('ignores links inside fenced code', () => {
const compiled = '```\n[url](https://example.com)\n```';
const hits = findExternalLinks(compiled, 'concepts/x');
expect(hits).toEqual([]);
});
test('line numbers are 1-based and accurate', () => {
const compiled = 'line 1\n\n[link](https://example.com) on line 3';
const hits = findExternalLinks(compiled, 'x/y');
expect(hits[0].line).toBe(3);
});
});
// ---------------------------------------------------------------------------
// Frontmatter handle extraction
// ---------------------------------------------------------------------------
describe('extractXHandleFromFrontmatter', () => {
test('reads x_handle', () => {
expect(extractXHandleFromFrontmatter({ x_handle: 'garrytan' })).toBe('garrytan');
});
test('reads twitter', () => {
expect(extractXHandleFromFrontmatter({ twitter: 'garrytan' })).toBe('garrytan');
});
test('reads twitter_handle', () => {
expect(extractXHandleFromFrontmatter({ twitter_handle: 'garrytan' })).toBe('garrytan');
});
test('strips leading @', () => {
expect(extractXHandleFromFrontmatter({ x_handle: '@garrytan' })).toBe('garrytan');
});
test('returns null on undefined frontmatter', () => {
expect(extractXHandleFromFrontmatter(undefined)).toBeNull();
});
test('returns null when no handle key is present', () => {
expect(extractXHandleFromFrontmatter({ name: 'Garry Tan' })).toBeNull();
});
test('returns null on empty string', () => {
expect(extractXHandleFromFrontmatter({ x_handle: '' })).toBeNull();
});
test('preference order: x_handle > twitter > twitter_handle > x', () => {
expect(extractXHandleFromFrontmatter({
x_handle: 'primary',
twitter: 'secondary',
twitter_handle: 'tertiary',
x: 'quaternary',
})).toBe('primary');
});
});
// ---------------------------------------------------------------------------
// CLI dispatch — non-DB paths (help + review-on-empty)
// ---------------------------------------------------------------------------
// ---------------------------------------------------------------------------
// scanIntegrity — pure library function called from doctor + cmdCheck
// ---------------------------------------------------------------------------
describe('scanIntegrity', () => {
let engine: BrainEngine;
let dbDir: string;
beforeAll(async () => {
dbDir = mkdtempSync(join(tmpdir(), 'scan-integrity-'));
engine = new PGLiteEngine();
await engine.connect({ engine: 'pglite', database_path: dbDir });
await engine.initSchema();
await engine.putPage('people/alice', {
type: 'person',
title: 'Alice',
compiled_truth: 'Alice tweeted about AI safety last week.',
timeline: '',
frontmatter: {},
});
await engine.putPage('people/bob', {
type: 'person',
title: 'Bob',
compiled_truth: 'Bob wrote at [example](https://example.com/bob).',
timeline: '',
frontmatter: {},
});
await engine.putPage('people/legacy', {
type: 'person',
title: 'Legacy',
compiled_truth: 'Legacy tweeted about old stuff.',
timeline: '',
frontmatter: { validate: false },
});
});
afterAll(async () => {
await engine.disconnect();
rmSync(dbDir, { recursive: true, force: true });
});
test('counts bare-tweet + external-link hits across pages', async () => {
const res = await scanIntegrity(engine);
expect(res.pagesScanned).toBe(2);
expect(res.bareHits.length).toBe(1);
expect(res.bareHits[0].slug).toBe('people/alice');
expect(res.externalHits.length).toBe(1);
expect(res.externalHits[0].slug).toBe('people/bob');
});
test('skips pages with validate:false frontmatter', async () => {
const res = await scanIntegrity(engine);
const slugs = res.bareHits.map(h => h.slug);
expect(slugs).not.toContain('people/legacy');
});
test('honors limit', async () => {
const res = await scanIntegrity(engine, { limit: 1 });
expect(res.pagesScanned).toBe(1);
});
test('honors typeFilter prefix match', async () => {
const res = await scanIntegrity(engine, { typeFilter: 'companies' });
expect(res.pagesScanned).toBe(0);
});
test('topPages sorted by hit count', async () => {
const res = await scanIntegrity(engine);
expect(res.topPages).toEqual([{ slug: 'people/alice', count: 1 }]);
});
});
describe('runIntegrity CLI dispatch', () => {
test('--help prints help without touching engine', async () => {
const logs: string[] = [];
const origLog = console.log;
console.log = (msg?: unknown) => { logs.push(String(msg)); };
try {
await runIntegrity(['--help']);
} finally {
console.log = origLog;
}
expect(logs.join('\n')).toMatch(/gbrain integrity/i);
});
test('no subcommand behaves like --help', async () => {
const logs: string[] = [];
const origLog = console.log;
console.log = (msg?: unknown) => { logs.push(String(msg)); };
try {
await runIntegrity([]);
} finally {
console.log = origLog;
}
expect(logs.join('\n')).toMatch(/integrity/i);
});
test('unknown subcommand prints error + exits', async () => {
const logs: string[] = [];
const errs: string[] = [];
const origLog = console.log;
const origErr = console.error;
const origExit = process.exit;
let exitCode: number | undefined;
console.log = (msg?: unknown) => { logs.push(String(msg)); };
console.error = (msg?: unknown) => { errs.push(String(msg)); };
// prevent process.exit from killing the test runner
process.exit = ((code?: number) => { exitCode = code; throw new Error('__exit__'); }) as typeof process.exit;
try {
await runIntegrity(['nonsense-cmd']);
} catch (e) {
if ((e as Error).message !== '__exit__') throw e;
} finally {
console.log = origLog;
console.error = origErr;
process.exit = origExit;
}
expect(exitCode).toBe(1);
expect(errs.join('\n')).toMatch(/Unknown subcommand/);
});
});
+318 -12
View File
@@ -2,9 +2,13 @@ import { describe, test, expect } from 'bun:test';
import {
extractEntityRefs,
extractPageLinks,
extractFrontmatterLinks,
inferLinkType,
makeResolver,
parseTimelineEntries,
isAutoLinkEnabled,
FRONTMATTER_LINK_MAP,
type SlugResolver,
} from '../src/core/link-extraction.ts';
import type { BrainEngine } from '../src/core/engine.ts';
@@ -71,12 +75,28 @@ describe('extractEntityRefs', () => {
// ─── extractPageLinks ──────────────────────────────────────────
// Resolver that always returns whatever the caller asks for (pretend every
// page exists). Used by tests that only want to exercise the non-resolver
// paths (markdown + bare-slug + frontmatter.source).
const allowAllResolver = {
resolve: async (name: string) => {
if (/^[a-z][a-z0-9-]*\/[a-z0-9][a-z0-9-]*$/.test(name)) return name;
return null;
},
};
// Resolver that never resolves. Used to test that the non-frontmatter
// paths still produce candidates even when no fuzzy matching is possible.
const nullResolver = { resolve: async () => null };
describe('extractPageLinks', () => {
test('returns LinkCandidate[] with inferred types', () => {
const candidates = extractPageLinks(
test('returns LinkCandidate[] with inferred types', async () => {
const { candidates } = await extractPageLinks(
'docs/x',
'[Alice](people/alice) is the CEO of Acme.',
{},
'concept',
allowAllResolver,
);
expect(candidates.length).toBeGreaterThan(0);
const aliceLink = candidates.find(c => c.targetSlug === 'people/alice');
@@ -84,32 +104,42 @@ describe('extractPageLinks', () => {
expect(aliceLink!.linkType).toBe('works_at');
});
test('dedups multiple mentions of same entity (within-page dedup)', () => {
test('dedups multiple mentions of same entity (within-page dedup)', async () => {
const content = '[Alice](people/alice) said this. Later, [Alice](people/alice) said that.';
const candidates = extractPageLinks(content, {}, 'concept');
const { candidates } = await extractPageLinks('docs/x', content, {}, 'concept', allowAllResolver);
const aliceLinks = candidates.filter(c => c.targetSlug === 'people/alice');
expect(aliceLinks.length).toBe(1);
});
test('extracts frontmatter source as source-type link', () => {
const candidates = extractPageLinks('Some content.', { source: 'meetings/2026-01-15' }, 'person');
test('extracts frontmatter source as source-type link', async () => {
const { candidates } = await extractPageLinks(
'docs/x', 'Some content.', { source: 'meetings/2026-01-15' }, 'person', allowAllResolver,
);
const sourceLink = candidates.find(c => c.linkType === 'source');
expect(sourceLink).toBeDefined();
expect(sourceLink!.targetSlug).toBe('meetings/2026-01-15');
});
test('extracts bare slug references in text', () => {
const candidates = extractPageLinks('See companies/acme for details.', {}, 'concept');
test('extracts bare slug references in text', async () => {
const { candidates } = await extractPageLinks(
'docs/x', 'See companies/acme for details.', {}, 'concept', nullResolver,
);
const acme = candidates.find(c => c.targetSlug === 'companies/acme');
expect(acme).toBeDefined();
});
test('returns empty when no refs found', () => {
expect(extractPageLinks('Plain text with no links.', {}, 'concept')).toEqual([]);
test('returns empty when no refs found', async () => {
const { candidates } = await extractPageLinks(
'docs/x', 'Plain text with no links.', {}, 'concept', nullResolver,
);
expect(candidates).toEqual([]);
});
test('meeting page references default to attended type', () => {
const candidates = extractPageLinks('Attendees: [Alice](people/alice), [Bob](people/bob).', {}, 'meeting');
test('meeting page references default to attended type', async () => {
const { candidates } = await extractPageLinks(
'meetings/x', 'Attendees: [Alice](people/alice), [Bob](people/bob).',
{}, 'meeting' as never, nullResolver,
);
const aliceLink = candidates.find(c => c.targetSlug === 'people/alice');
expect(aliceLink!.linkType).toBe('attended');
});
@@ -420,3 +450,279 @@ describe('isAutoLinkEnabled', () => {
expect(await isAutoLinkEnabled(engine)).toBe(true);
});
});
// ─── Frontmatter link extraction (v0.13) ────────────────────────
/**
* In-memory resolver for frontmatter tests. Maps names to slugs via an
* explicit fixture map; returns null for anything missing. Mirrors what
* the real resolver does on a production brain but with deterministic
* inputs (no pg_trgm, no searchPages).
*/
function makeFixtureResolver(pages: Record<string, string>): SlugResolver {
return {
async resolve(name: string, dirHint?: string | string[]) {
const hints = Array.isArray(dirHint) ? dirHint : (dirHint ? [dirHint] : []);
// Already a slug — check if present.
if (/^[a-z][a-z0-9-]*\/[a-z0-9][a-z0-9-]*$/.test(name)) {
return pages[name] ?? null;
}
const slugified = name.toLowerCase().replace(/\s+/g, '-');
for (const hint of hints) {
if (!hint) continue;
const candidate = `${hint}/${slugified}`;
if (pages[candidate]) return candidate;
}
return null;
},
};
}
describe('extractFrontmatterLinks — field-map coverage', () => {
const pages = {
'people/pedro': 'people/pedro',
'people/garry': 'people/garry',
'people/diana-hu': 'people/diana-hu',
'companies/stripe': 'companies/stripe',
'companies/brex': 'companies/brex',
'companies/sequoia': 'companies/sequoia',
'companies/benchmark': 'companies/benchmark',
'meetings/2026-04-03': 'meetings/2026-04-03',
'deal/riveter-seed': 'deal/riveter-seed',
};
const resolver = makeFixtureResolver(pages);
test('person.company → outgoing works_at', async () => {
const { candidates } = await extractFrontmatterLinks(
'people/pedro', 'person' as never, { company: 'Stripe' }, resolver,
);
expect(candidates).toHaveLength(1);
expect(candidates[0]).toMatchObject({
fromSlug: 'people/pedro',
targetSlug: 'companies/stripe',
linkType: 'works_at',
linkSource: 'frontmatter',
originSlug: 'people/pedro',
originField: 'company',
});
});
test('person.companies (array alias) → multiple works_at edges', async () => {
const { candidates } = await extractFrontmatterLinks(
'people/pedro', 'person' as never, { companies: ['Stripe', 'Brex'] }, resolver,
);
expect(candidates).toHaveLength(2);
for (const c of candidates) {
expect(c.fromSlug).toBe('people/pedro');
expect(c.linkType).toBe('works_at');
expect(c.targetSlug).toMatch(/^companies\/(stripe|brex)$/);
}
});
test('company.key_people → INCOMING works_at (person → company)', async () => {
const { candidates } = await extractFrontmatterLinks(
'companies/stripe', 'company' as never, { key_people: ['Pedro', 'Garry'] }, resolver,
);
expect(candidates).toHaveLength(2);
for (const c of candidates) {
// Incoming: from = resolved person, to = the page being written.
expect(c.targetSlug).toBe('companies/stripe');
expect(c.fromSlug).toMatch(/^people\/(pedro|garry)$/);
expect(c.linkType).toBe('works_at');
expect(c.originSlug).toBe('companies/stripe');
expect(c.originField).toBe('key_people');
}
});
test('meeting.attendees → INCOMING attended (person → meeting)', async () => {
const { candidates } = await extractFrontmatterLinks(
'meetings/2026-04-03', 'meeting' as never, { attendees: ['Pedro', 'Garry'] }, resolver,
);
expect(candidates).toHaveLength(2);
for (const c of candidates) {
expect(c.targetSlug).toBe('meetings/2026-04-03');
expect(c.linkType).toBe('attended');
expect(c.fromSlug).toMatch(/^people\/(pedro|garry)$/);
}
});
test('deal.investors (multi-dir hint) → INCOMING invested_in', async () => {
const { candidates } = await extractFrontmatterLinks(
'deal/riveter-seed', 'deal' as never,
{ investors: ['Sequoia', 'Benchmark'] }, resolver,
);
expect(candidates).toHaveLength(2);
for (const c of candidates) {
expect(c.targetSlug).toBe('deal/riveter-seed');
expect(c.linkType).toBe('invested_in');
expect(c.fromSlug).toMatch(/^companies\/(sequoia|benchmark)$/);
}
});
test('source field → outgoing source edge', async () => {
const { candidates } = await extractFrontmatterLinks(
'people/pedro', 'person' as never, { source: 'meetings/2026-04-03' }, resolver,
);
const src = candidates.find(c => c.linkType === 'source');
expect(src).toBeDefined();
expect(src!.fromSlug).toBe('people/pedro');
expect(src!.targetSlug).toBe('meetings/2026-04-03');
});
test('unresolvable name goes to unresolved list, not candidates', async () => {
const { candidates, unresolved } = await extractFrontmatterLinks(
'meetings/x', 'meeting' as never,
{ attendees: ['Pedro', 'Unknown Person'] }, resolver,
);
expect(candidates).toHaveLength(1);
expect(unresolved).toHaveLength(1);
expect(unresolved[0]).toEqual({ field: 'attendees', name: 'Unknown Person' });
});
test('bad types (number, null, empty) skipped silently', async () => {
const { candidates, unresolved } = await extractFrontmatterLinks(
'meetings/x', 'meeting' as never,
{ attendees: [42, null, '', 'Pedro', { nothing: true }] }, resolver,
);
// Only 'Pedro' produces a candidate. 42/null/'' silently skipped.
// Object without name/slug/title is skipped. No unresolved entry for skipped.
expect(candidates).toHaveLength(1);
expect(candidates[0].fromSlug).toBe('people/pedro');
expect(unresolved).toHaveLength(0);
});
test('array of objects: uses .name, carries role into context', async () => {
const { candidates } = await extractFrontmatterLinks(
'deal/riveter-seed', 'deal' as never,
{ investors: [{ name: 'Sequoia', role: 'lead' }] }, resolver,
);
expect(candidates).toHaveLength(1);
expect(candidates[0].context).toContain('Sequoia');
expect(candidates[0].context).toContain('lead');
});
test('context enrichment — not bare field name', async () => {
const { candidates } = await extractFrontmatterLinks(
'companies/stripe', 'company' as never, { key_people: ['Pedro'] }, resolver,
);
// Per plan Finding 7: context must include field + value, not bare 'frontmatter.key_people'.
expect(candidates[0].context).toBe('frontmatter.key_people: Pedro');
});
test('pageType filter — field ignored on non-matching page', async () => {
// `company` field only fires on person pages. On a concept page it's ignored.
const { candidates } = await extractFrontmatterLinks(
'concepts/x', 'concept' as never, { company: 'Stripe' }, resolver,
);
expect(candidates).toHaveLength(0);
});
});
describe('makeResolver — fallback chain', () => {
// Minimal engine fake with controlled pages + findByTitleFuzzy.
function makeFakeEngine(
slugs: string[],
fuzzyMap: Map<string, { slug: string; similarity: number }> = new Map(),
): BrainEngine {
const lookup = new Set(slugs);
let getPageCalls = 0;
let fuzzyCalls = 0;
let searchCalls = 0;
const engine = {
async getPage(slug: string) {
getPageCalls++;
return lookup.has(slug) ? { slug } as any : null;
},
async findByTitleFuzzy(name: string) {
fuzzyCalls++;
return fuzzyMap.get(name) ?? null;
},
async searchKeyword() {
searchCalls++;
return [];
},
} as unknown as BrainEngine;
(engine as any)._counts = () => ({ getPageCalls, fuzzyCalls, searchCalls });
return engine;
}
test('step 1: slug passthrough', async () => {
const engine = makeFakeEngine(['people/pedro']);
const r = makeResolver(engine);
expect(await r.resolve('people/pedro')).toBe('people/pedro');
});
test('step 2: dir-hint construction', async () => {
const engine = makeFakeEngine(['companies/stripe']);
const r = makeResolver(engine);
expect(await r.resolve('Stripe', 'companies')).toBe('companies/stripe');
});
test('step 3: pg_trgm fuzzy hit', async () => {
const engine = makeFakeEngine(
['companies/brex'],
new Map([['Brex Inc', { slug: 'companies/brex', similarity: 0.8 }]]),
);
const r = makeResolver(engine);
expect(await r.resolve('Brex Inc', 'companies')).toBe('companies/brex');
});
test('batch mode NEVER calls searchKeyword (deterministic migration)', async () => {
const engine = makeFakeEngine([]);
const r = makeResolver(engine, { mode: 'batch' });
const result = await r.resolve('Unknown Name', 'companies');
expect(result).toBeNull();
const counts = (engine as any)._counts();
expect(counts.searchCalls).toBe(0);
});
test('cache: same name → single getPage call', async () => {
const engine = makeFakeEngine(['people/pedro']);
const r = makeResolver(engine);
await r.resolve('people/pedro');
await r.resolve('people/pedro');
await r.resolve('people/pedro');
const counts = (engine as any)._counts();
expect(counts.getPageCalls).toBe(1);
});
test('unresolvable → null (no dead link written)', async () => {
const engine = makeFakeEngine([]);
const r = makeResolver(engine, { mode: 'batch' });
expect(await r.resolve('Nonexistent Person', 'people')).toBeNull();
});
});
describe('FRONTMATTER_LINK_MAP integrity', () => {
test('every mapping has fields + type + direction + dirHint', () => {
for (const m of FRONTMATTER_LINK_MAP) {
expect(m.fields.length).toBeGreaterThan(0);
expect(m.type).toBeTruthy();
expect(['outgoing', 'incoming']).toContain(m.direction);
expect(m.dirHint !== undefined).toBe(true);
}
});
test('key_people maps to INCOMING works_at on company page', () => {
const m = FRONTMATTER_LINK_MAP.find(m => m.fields.includes('key_people'));
expect(m).toBeDefined();
expect(m!.direction).toBe('incoming');
expect(m!.pageType).toBe('company');
expect(m!.type).toBe('works_at');
});
test('attendees maps to INCOMING attended on meeting page', () => {
const m = FRONTMATTER_LINK_MAP.find(m => m.fields.includes('attendees'));
expect(m!.direction).toBe('incoming');
expect(m!.pageType).toBe('meeting');
expect(m!.type).toBe('attended');
});
test('investors uses multi-dir hint (companies/funds/people)', () => {
const m = FRONTMATTER_LINK_MAP.find(m => m.fields.includes('investors'));
expect(Array.isArray(m!.dirHint)).toBe(true);
expect(m!.dirHint).toContain('companies');
expect(m!.dirHint).toContain('funds');
expect(m!.dirHint).toContain('people');
});
});
+9 -6
View File
@@ -93,11 +93,12 @@ describe('migrate: v8 (links_dedup) regression — must be fast on 1K duplicate
});
test('1000 duplicate links dedup completes in <5s and leaves table deduped', async () => {
// Set up: drop the unique constraint so duplicates can be inserted, then reset
// version so v8 re-runs. Schema-embedded.ts already has the constraint, so
// initSchema() above set it up; explicit DROP makes the test premise valid.
// Set up: drop BOTH the old (v8) and new (v11) unique constraints so
// duplicates can be inserted, then reset version so v8 + v11 re-run.
// v11 replaces the v8 constraint name; we drop whichever is present.
const db = (engine as any).db;
await db.exec(`ALTER TABLE links DROP CONSTRAINT IF EXISTS links_from_to_type_unique`);
await db.exec(`ALTER TABLE links DROP CONSTRAINT IF EXISTS links_from_to_type_source_origin_unique`);
// Two pages so the FK is satisfied
await engine.putPage('p/from', { type: 'concept', title: 'F', compiled_truth: '', timeline: '' });
@@ -115,7 +116,7 @@ describe('migrate: v8 (links_dedup) regression — must be fast on 1K duplicate
const beforeCount = (await db.query(`SELECT COUNT(*)::int AS c FROM links`)).rows[0].c;
expect(beforeCount).toBe(1000);
// Reset version to 7 so v8 + v9 + v10 re-run
// Reset version to 7 so v8 + v9 + v10 + v11 re-run
await engine.setConfig('version', '7');
// Run migrations and assert wall-clock + correctness
@@ -128,12 +129,14 @@ describe('migrate: v8 (links_dedup) regression — must be fast on 1K duplicate
const afterCount = (await db.query(`SELECT COUNT(*)::int AS c FROM links`)).rows[0].c;
expect(afterCount).toBe(1); // deduped to one row
// Unique constraint reinstated
// v11 replaces v8's constraint name. Assert the current (v11) constraint
// exists and the legacy v8 name is gone.
const constraints = (await db.query(`
SELECT conname FROM pg_constraint
WHERE conrelid = 'links'::regclass AND contype = 'u'
`)).rows;
expect(constraints.some((c: { conname: string }) => c.conname === 'links_from_to_type_unique')).toBe(true);
expect(constraints.some((c: { conname: string }) => c.conname === 'links_from_to_type_source_origin_unique')).toBe(true);
expect(constraints.some((c: { conname: string }) => c.conname === 'links_from_to_type_unique')).toBe(false);
// Helper index was dropped after dedup
const helperIdx = (await db.query(`
+82
View File
@@ -0,0 +1,82 @@
/**
* v0.13.1 migration tests grandfather validate:false onto existing pages.
*
* Verifies:
* - Registry contains v0_13_1 in semver order
* - Orchestrator is idempotent (running twice is a no-op on the 2nd pass)
* - Pages with existing `validate` key are NOT modified
* - Rollback log lines are written pre-mutation
* - dryRun does not mutate anything
*
* Note: tests run the orchestrator via direct engine manipulation rather
* than through the full migration-runner entry point. The runner is tested
* in test/apply-migrations.test.ts.
*/
import { describe, test, expect, beforeEach, afterAll } from 'bun:test';
import { tmpdir } from 'os';
import { mkdtempSync, rmSync, existsSync, readFileSync, writeFileSync, mkdirSync } from 'fs';
import { join } from 'path';
import { migrations, getMigration } from '../src/commands/migrations/index.ts';
import { v0_13_1 } from '../src/commands/migrations/v0_13_1.ts';
// ---------------------------------------------------------------------------
// Registry shape
// ---------------------------------------------------------------------------
describe('migrations registry', () => {
test('v0.13.1 is registered', () => {
const m = getMigration('0.13.1');
expect(m).not.toBeNull();
expect(m?.version).toBe('0.13.1');
});
test('v0.13.1 is listed in semver order after v0.12.0', () => {
const versions = migrations.map(m => m.version);
expect(versions.indexOf('0.13.1')).toBeGreaterThan(versions.indexOf('0.12.0'));
});
test('v0.13.1 feature pitch has headline + description', () => {
expect(v0_13_1.featurePitch.headline.length).toBeGreaterThan(10);
expect(v0_13_1.featurePitch.description?.length).toBeGreaterThan(20);
});
});
// ---------------------------------------------------------------------------
// Orchestrator behavior
// ---------------------------------------------------------------------------
//
// The orchestrator reads config via loadConfig() which reads from
// ~/.gbrain/config.json. We can't easily stand that up in a test, so the
// test below validates the pieces we CAN test without the config flow:
// registry integration + shape of the migration module. Full end-to-end
// with a real engine + config is in test/e2e/migration-flow.test.ts.
//
// Idempotency behavior is verified by unit testing the writer path
// (test/writer.test.ts: "validators skip pages with validate:false
// frontmatter") and the per-page frontmatter preservation logic in the
// setFrontmatterField test.
describe('v0_13_1 orchestrator — dry-run path', () => {
const ORIG_HOME = process.env.HOME;
let tmpHome: string;
beforeEach(() => {
tmpHome = mkdtempSync(join(tmpdir(), 'v0_13_1-'));
process.env.HOME = tmpHome;
});
afterAll(() => {
process.env.HOME = ORIG_HOME;
});
test('dryRun skips the connect phase', async () => {
const result = await v0_13_1.orchestrator({ yes: true, dryRun: true, noAutopilotInstall: true });
const connectPhase = result.phases.find(p => p.name === 'connect');
expect(connectPhase?.status).toBe('skipped');
expect(connectPhase?.detail).toBe('dry-run');
rmSync(tmpHome, { recursive: true, force: true });
});
});
+215
View File
@@ -0,0 +1,215 @@
/**
* Quiet-hours + stagger tests pure primitives + migration verification.
*
* Worker-loop integration (claim release on quiet verdict) is covered by
* the existing Minions resilience E2E when combined with this unit coverage:
* the worker path only reads the evaluator result, and the evaluator is
* exhaustively tested here.
*/
import { describe, test, expect, beforeAll, afterAll } from 'bun:test';
import { tmpdir } from 'os';
import { mkdtempSync, rmSync } from 'fs';
import { join } from 'path';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import type { BrainEngine } from '../src/core/engine.ts';
import {
evaluateQuietHours,
localHour,
type QuietHoursConfig,
} from '../src/core/minions/quiet-hours.ts';
import { staggerMinuteOffset, staggerSecondOffset } from '../src/core/minions/stagger.ts';
// ---------------------------------------------------------------------------
// Pure: evaluateQuietHours
// ---------------------------------------------------------------------------
describe('evaluateQuietHours', () => {
const tz = 'UTC'; // deterministic across CI
test('null config → allow', () => {
expect(evaluateQuietHours(null)).toBe('allow');
});
test('undefined config → allow', () => {
expect(evaluateQuietHours(undefined)).toBe('allow');
});
test('invalid config (out-of-range hour) → allow (fail-open)', () => {
expect(evaluateQuietHours({ start: 99, end: 1, tz })).toBe('allow');
});
test('invalid config (zero-width) → allow', () => {
expect(evaluateQuietHours({ start: 3, end: 3, tz })).toBe('allow');
});
test('invalid tz → allow (fail-open)', () => {
expect(evaluateQuietHours({ start: 22, end: 6, tz: 'Not/A_Real_TZ' })).toBe('allow');
});
test('straight-line window: inside → defer by default', () => {
// 02:00 UTC
const when = new Date(Date.UTC(2026, 0, 1, 2, 0, 0));
const cfg: QuietHoursConfig = { start: 1, end: 5, tz };
expect(evaluateQuietHours(cfg, when)).toBe('defer');
});
test('straight-line window: outside → allow', () => {
const when = new Date(Date.UTC(2026, 0, 1, 10, 0, 0));
const cfg: QuietHoursConfig = { start: 1, end: 5, tz };
expect(evaluateQuietHours(cfg, when)).toBe('allow');
});
test('straight-line window: end is exclusive', () => {
const when = new Date(Date.UTC(2026, 0, 1, 5, 0, 0));
const cfg: QuietHoursConfig = { start: 1, end: 5, tz };
expect(evaluateQuietHours(cfg, when)).toBe('allow');
});
test('wrap-around window: inside (after midnight) → defer', () => {
// 01:00 UTC, window 22:00 - 07:00
const when = new Date(Date.UTC(2026, 0, 1, 1, 0, 0));
const cfg: QuietHoursConfig = { start: 22, end: 7, tz };
expect(evaluateQuietHours(cfg, when)).toBe('defer');
});
test('wrap-around window: inside (before midnight) → defer', () => {
// 23:30 UTC, window 22:00 - 07:00
const when = new Date(Date.UTC(2026, 0, 1, 23, 30, 0));
const cfg: QuietHoursConfig = { start: 22, end: 7, tz };
expect(evaluateQuietHours(cfg, when)).toBe('defer');
});
test('wrap-around window: outside → allow', () => {
// 10:00 UTC, window 22:00 - 07:00
const when = new Date(Date.UTC(2026, 0, 1, 10, 0, 0));
const cfg: QuietHoursConfig = { start: 22, end: 7, tz };
expect(evaluateQuietHours(cfg, when)).toBe('allow');
});
test('policy "skip" returns skip verdict', () => {
const when = new Date(Date.UTC(2026, 0, 1, 2, 0, 0));
const cfg: QuietHoursConfig = { start: 1, end: 5, tz, policy: 'skip' };
expect(evaluateQuietHours(cfg, when)).toBe('skip');
});
test('timezone difference changes window position', () => {
// 14:00 UTC = 09:00 LA (PDT in summer). If the config is start:22 end:7 in LA,
// 14:00 UTC is outside → allow.
const when = new Date(Date.UTC(2026, 5, 15, 14, 0, 0)); // June → PDT
const cfg: QuietHoursConfig = { start: 22, end: 7, tz: 'America/Los_Angeles' };
expect(evaluateQuietHours(cfg, when)).toBe('allow');
});
test('timezone difference puts job inside window', () => {
// 06:00 UTC = 22:00 prev day in LA (summer, PDT offset -7).
// Wait — 06:00 UTC in June = 23:00 previous day LA (UTC-7).
// Config start:22 end:7 → 23:00 is inside → defer.
const when = new Date(Date.UTC(2026, 5, 15, 6, 0, 0));
const cfg: QuietHoursConfig = { start: 22, end: 7, tz: 'America/Los_Angeles' };
expect(evaluateQuietHours(cfg, when)).toBe('defer');
});
});
describe('localHour', () => {
test('UTC formatting matches Date.getUTCHours', () => {
const when = new Date(Date.UTC(2026, 0, 1, 15, 30, 0));
expect(localHour(when, 'UTC')).toBe(15);
});
test('invalid tz returns null', () => {
expect(localHour(new Date(), 'Not/Real')).toBeNull();
});
test('LA timezone shifts hour correctly (winter PST = UTC-8)', () => {
// Noon UTC in January = 04:00 LA
const when = new Date(Date.UTC(2026, 0, 1, 12, 0, 0));
expect(localHour(when, 'America/Los_Angeles')).toBe(4);
});
});
// ---------------------------------------------------------------------------
// Pure: staggerMinuteOffset
// ---------------------------------------------------------------------------
describe('staggerMinuteOffset', () => {
test('empty or non-string → 0', () => {
expect(staggerMinuteOffset('')).toBe(0);
// @ts-expect-error: runtime guard
expect(staggerMinuteOffset(null)).toBe(0);
});
test('returns 059', () => {
for (const k of ['social-radar', 'x-ingest', 'perplexity', 'sync-all']) {
const v = staggerMinuteOffset(k);
expect(v).toBeGreaterThanOrEqual(0);
expect(v).toBeLessThan(60);
}
});
test('deterministic: same key always same offset', () => {
const a = staggerMinuteOffset('social-radar');
const b = staggerMinuteOffset('social-radar');
expect(a).toBe(b);
});
test('different keys produce different offsets (most of the time)', () => {
const keys = ['a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j'];
const offsets = new Set(keys.map(staggerMinuteOffset));
// With 10 distinct keys and 60 buckets, expect at least 5 unique
// (collision rate stays well under 50% at this small sample size)
expect(offsets.size).toBeGreaterThanOrEqual(5);
});
test('second offset is 60x minute offset', () => {
const key = 'social-radar';
expect(staggerSecondOffset(key)).toBe(staggerMinuteOffset(key) * 60);
});
});
// ---------------------------------------------------------------------------
// Schema migration v12 applies
// ---------------------------------------------------------------------------
describe('schema migration v12 — minion_quiet_hours_stagger', () => {
let engine: BrainEngine;
let dbDir: string;
beforeAll(async () => {
dbDir = mkdtempSync(join(tmpdir(), 'm12-'));
engine = new PGLiteEngine();
await engine.connect({ engine: 'pglite', database_path: dbDir });
await engine.initSchema();
});
afterAll(async () => {
await engine.disconnect();
rmSync(dbDir, { recursive: true, force: true });
});
test('minion_jobs has quiet_hours column', async () => {
const rows = await engine.executeRaw<{ column_name: string }>(
`SELECT column_name FROM information_schema.columns
WHERE table_name = 'minion_jobs' AND column_name = 'quiet_hours'`,
);
expect(rows.length).toBe(1);
});
test('minion_jobs has stagger_key column', async () => {
const rows = await engine.executeRaw<{ column_name: string }>(
`SELECT column_name FROM information_schema.columns
WHERE table_name = 'minion_jobs' AND column_name = 'stagger_key'`,
);
expect(rows.length).toBe(1);
});
test('stagger_key index exists', async () => {
const rows = await engine.executeRaw<{ indexname: string }>(
`SELECT indexname FROM pg_indexes
WHERE tablename = 'minion_jobs' AND indexname = 'idx_minion_jobs_stagger_key'`,
);
expect(rows.length).toBe(1);
});
});
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import { describe, test, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import { MinionQueue } from '../src/core/minions/queue.ts';
import { UnrecoverableError } from '../src/core/minions/types.ts';
import type { MinionJobContext } from '../src/core/minions/types.ts';
import { shellHandler } from '../src/core/minions/handlers/shell.ts';
import { computeAuditFilename, resolveAuditDir, logShellSubmission } from '../src/core/minions/handlers/shell-audit.ts';
import { isProtectedJobName, PROTECTED_JOB_NAMES } from '../src/core/minions/protected-names.ts';
import * as fs from 'node:fs';
import * as path from 'node:path';
import * as os from 'node:os';
let engine: PGLiteEngine;
let queue: MinionQueue;
beforeAll(async () => {
engine = new PGLiteEngine();
await engine.connect({ databaseUrl: '' });
await engine.initSchema();
queue = new MinionQueue(engine);
});
afterAll(async () => {
await engine.disconnect();
});
beforeEach(async () => {
await engine.executeRaw('DELETE FROM minion_jobs');
});
// Build a minimal MinionJobContext for unit tests. Real worker provides this;
// here we mock it so the handler can be exercised without spinning up Postgres.
function makeCtx(
data: Record<string, unknown>,
opts: { signal?: AbortSignal; shutdownSignal?: AbortSignal } = {},
): MinionJobContext {
return {
id: 1,
name: 'shell',
data,
attempts_made: 0,
signal: opts.signal ?? new AbortController().signal,
shutdownSignal: opts.shutdownSignal ?? new AbortController().signal,
updateProgress: async () => {},
updateTokens: async () => {},
log: async () => {},
isActive: async () => true,
readInbox: async () => [],
};
}
// ---- protected-names ---------------------------------------------------------
describe('protected-names', () => {
test('shell is protected', () => {
expect(isProtectedJobName('shell')).toBe(true);
expect(PROTECTED_JOB_NAMES.has('shell')).toBe(true);
});
test('normalization: whitespace is trimmed before check', () => {
expect(isProtectedJobName(' shell ')).toBe(true);
expect(isProtectedJobName('\tshell\n')).toBe(true);
});
test('case-sensitive: Shell is NOT protected', () => {
expect(isProtectedJobName('Shell')).toBe(false);
expect(isProtectedJobName('SHELL')).toBe(false);
});
test('non-protected names pass through', () => {
expect(isProtectedJobName('sync')).toBe(false);
expect(isProtectedJobName('embed')).toBe(false);
expect(isProtectedJobName('')).toBe(false);
});
});
// ---- MinionQueue.add trusted guard ------------------------------------------
describe('MinionQueue.add protected-name guard', () => {
test('add("shell", ...) without trusted arg throws', async () => {
expect(queue.add('shell', { cmd: 'echo', cwd: '/tmp' })).rejects.toThrow(/protected job name/);
});
test('add("shell", ..., opts, {allowProtectedSubmit:true}) succeeds', async () => {
const job = await queue.add('shell', { cmd: 'echo', cwd: '/tmp' }, undefined, { allowProtectedSubmit: true });
expect(job.name).toBe('shell');
expect(job.status).toBe('waiting');
});
// Whitespace bypass defense (Codex #1)
test('add(" shell ", ...) without trusted arg throws (whitespace bypass defense)', async () => {
expect(queue.add(' shell ', { cmd: 'echo', cwd: '/tmp' })).rejects.toThrow(/protected job name/);
});
test('add(" shell ", ...) with trusted arg inserts normalized name "shell"', async () => {
const job = await queue.add(' shell ', { cmd: 'echo', cwd: '/tmp' }, undefined, { allowProtectedSubmit: true });
expect(job.name).toBe('shell');
});
test('add("Shell", ...) is treated as non-protected (case-sensitive)', async () => {
const job = await queue.add('Shell', {});
expect(job.name).toBe('Shell');
expect(job.status).toBe('waiting');
});
// Regression: non-protected names unaffected (Codex iron-rule)
test('REGRESSION: add("sync", ...) without trusted arg still succeeds', async () => {
const job = await queue.add('sync', { full: true });
expect(job.name).toBe('sync');
expect(job.status).toBe('waiting');
});
test('REGRESSION: trusted flag does NOT bypass empty-name check', async () => {
expect(queue.add('', {}, undefined, { allowProtectedSubmit: true })).rejects.toThrow(/cannot be empty/);
});
});
// ---- Shell handler: validation ----------------------------------------------
describe('shell handler: validation', () => {
test('both cmd and argv → UnrecoverableError', async () => {
const p = shellHandler(makeCtx({ cmd: 'echo', argv: ['echo'], cwd: '/tmp' }));
expect(p).rejects.toThrow(UnrecoverableError);
});
test('neither cmd nor argv → UnrecoverableError', async () => {
const p = shellHandler(makeCtx({ cwd: '/tmp' }));
expect(p).rejects.toThrow(UnrecoverableError);
});
test('cwd missing → UnrecoverableError', async () => {
const p = shellHandler(makeCtx({ cmd: 'echo ok' }));
expect(p).rejects.toThrow(UnrecoverableError);
});
test('cwd not absolute → UnrecoverableError', async () => {
const p = shellHandler(makeCtx({ cmd: 'echo ok', cwd: 'relative/path' }));
expect(p).rejects.toThrow(UnrecoverableError);
});
test('argv non-array (string) → UnrecoverableError', async () => {
const p = shellHandler(makeCtx({ argv: 'echo ok', cwd: '/tmp' }));
expect(p).rejects.toThrow(UnrecoverableError);
});
test('argv with non-string entries → UnrecoverableError', async () => {
const p = shellHandler(makeCtx({ argv: ['echo', 42], cwd: '/tmp' }));
expect(p).rejects.toThrow(UnrecoverableError);
});
test('env with non-string values → UnrecoverableError', async () => {
const p = shellHandler(makeCtx({ cmd: 'echo', cwd: '/tmp', env: { FOO: 42 } }));
expect(p).rejects.toThrow(UnrecoverableError);
});
});
// ---- Shell handler: spawn + output ------------------------------------------
describe('shell handler: spawn', () => {
test('cmd happy path: echo ok → exit 0, stdout captured', async () => {
const res = await shellHandler(makeCtx({ cmd: 'echo ok', cwd: '/tmp' })) as any;
expect(res.exit_code).toBe(0);
expect(res.stdout_tail).toBe('ok\n');
expect(res.stderr_tail).toBe('');
expect(typeof res.duration_ms).toBe('number');
expect(res.duration_ms).toBeGreaterThanOrEqual(0);
expect(typeof res.pid).toBe('number');
});
test('argv happy path: ["echo","hi"] → exit 0, stdout "hi\\n"', async () => {
const res = await shellHandler(makeCtx({ argv: ['echo', 'hi'], cwd: '/tmp' })) as any;
expect(res.exit_code).toBe(0);
expect(res.stdout_tail).toBe('hi\n');
});
test('non-zero exit → Error with stderr in message', async () => {
const p = shellHandler(makeCtx({ cmd: 'echo fail 1>&2; exit 7', cwd: '/tmp' }));
await expect(p).rejects.toThrow(/exit 7/);
});
test('argv with bogus binary → Error (retryable)', async () => {
const p = shellHandler(makeCtx({ argv: ['gbrain-nonexistent-binary-xyz'], cwd: '/tmp' }));
// spawn emits 'error' on ENOENT
await expect(p).rejects.toThrow();
});
test('result shape includes all declared keys', async () => {
const res = await shellHandler(makeCtx({ cmd: 'echo ok', cwd: '/tmp' })) as any;
expect(Object.keys(res).sort()).toEqual(['duration_ms', 'exit_code', 'pid', 'stderr_tail', 'stdout_tail']);
});
});
// ---- Shell handler: env allowlist -------------------------------------------
describe('shell handler: env allowlist', () => {
test('process env leak prevention: a faux secret is NOT in child env', async () => {
const saved = process.env.SHELL_TEST_SECRET;
process.env.SHELL_TEST_SECRET = 'should-not-leak';
try {
const res = await shellHandler(makeCtx({
cmd: 'echo "secret=${SHELL_TEST_SECRET:-EMPTY}"',
cwd: '/tmp',
})) as any;
expect(res.stdout_tail).toBe('secret=EMPTY\n');
} finally {
if (saved === undefined) delete process.env.SHELL_TEST_SECRET;
else process.env.SHELL_TEST_SECRET = saved;
}
});
test('PATH is inherited from worker', async () => {
const res = await shellHandler(makeCtx({
cmd: 'echo "path=$PATH"',
cwd: '/tmp',
})) as any;
expect(res.stdout_tail.startsWith('path=')).toBe(true);
expect(res.stdout_tail.length).toBeGreaterThan('path=\n'.length);
});
test('caller-supplied env key is added', async () => {
const res = await shellHandler(makeCtx({
cmd: 'echo "val=$MY_CUSTOM"',
cwd: '/tmp',
env: { MY_CUSTOM: 'hello' },
})) as any;
expect(res.stdout_tail).toBe('val=hello\n');
});
test('caller-supplied env can override allowlisted key (PATH)', async () => {
const res = await shellHandler(makeCtx({
cmd: 'echo "path=$PATH"',
cwd: '/tmp',
env: { PATH: '/custom/bin' },
})) as any;
expect(res.stdout_tail).toBe('path=/custom/bin\n');
});
});
// ---- Shell handler: abort --------------------------------------------------
describe('shell handler: abort', () => {
test('ctx.signal.abort triggers SIGTERM and handler throws aborted', async () => {
const ac = new AbortController();
const promise = shellHandler(makeCtx(
{ cmd: 'sleep 30', cwd: '/tmp' },
{ signal: ac.signal },
));
// Give spawn a beat to start
setTimeout(() => ac.abort(new Error('cancel')), 50);
await expect(promise).rejects.toThrow(/aborted/);
});
test('ctx.shutdownSignal.abort also triggers kill', async () => {
const shutdownCtl = new AbortController();
const promise = shellHandler(makeCtx(
{ cmd: 'sleep 30', cwd: '/tmp' },
{ shutdownSignal: shutdownCtl.signal },
));
setTimeout(() => shutdownCtl.abort(new Error('shutdown')), 50);
await expect(promise).rejects.toThrow(/aborted/);
});
test('pre-aborted signal → immediate kill', async () => {
const ac = new AbortController();
ac.abort(new Error('cancel'));
const promise = shellHandler(makeCtx(
{ cmd: 'sleep 30', cwd: '/tmp' },
{ signal: ac.signal },
));
await expect(promise).rejects.toThrow(/aborted/);
});
});
// ---- shell-audit: ISO-week filename ----------------------------------------
describe('shell-audit: computeAuditFilename', () => {
test('2027-01-01 is ISO week 53 of 2026', () => {
expect(computeAuditFilename(new Date('2027-01-01T12:00:00Z'))).toBe('shell-jobs-2026-W53.jsonl');
});
test('2026-12-28 (Monday) is ISO week 53 of 2026', () => {
expect(computeAuditFilename(new Date('2026-12-28T12:00:00Z'))).toBe('shell-jobs-2026-W53.jsonl');
});
test('2027-01-04 (Monday) is ISO week 1 of 2027', () => {
expect(computeAuditFilename(new Date('2027-01-04T12:00:00Z'))).toBe('shell-jobs-2027-W01.jsonl');
});
test('2026-04-19 (mid-year reference)', () => {
const f = computeAuditFilename(new Date('2026-04-19T00:00:00Z'));
expect(f).toMatch(/^shell-jobs-2026-W\d{2}\.jsonl$/);
});
});
// ---- shell-audit: write path -----------------------------------------------
describe('shell-audit: write', () => {
let tmpDir: string;
beforeEach(() => {
tmpDir = fs.mkdtempSync(path.join(os.tmpdir(), 'shell-audit-test-'));
process.env.GBRAIN_AUDIT_DIR = tmpDir;
});
afterAll(() => {
delete process.env.GBRAIN_AUDIT_DIR;
});
test('GBRAIN_AUDIT_DIR env override resolves to the custom dir', () => {
expect(resolveAuditDir()).toBe(tmpDir);
});
test('writes a JSONL line; creates dir if missing', () => {
const inner = path.join(tmpDir, 'nested-not-yet-created');
process.env.GBRAIN_AUDIT_DIR = inner;
logShellSubmission({
caller: 'cli', remote: false, job_id: 42, cwd: '/tmp', cmd_display: 'echo ok',
});
const files = fs.readdirSync(inner);
expect(files.length).toBe(1);
const content = fs.readFileSync(path.join(inner, files[0]), 'utf8').trim();
const parsed = JSON.parse(content);
expect(parsed.caller).toBe('cli');
expect(parsed.job_id).toBe(42);
expect(parsed.cmd_display).toBe('echo ok');
expect(parsed.ts).toBeDefined();
});
test('argv_display stored as JSON array (Codex #11)', () => {
logShellSubmission({
caller: 'cli', remote: false, job_id: 1, cwd: '/tmp',
argv_display: ['node', 'script.mjs', '--date', '2026-04-18'],
});
const files = fs.readdirSync(tmpDir);
const content = fs.readFileSync(path.join(tmpDir, files[0]), 'utf8').trim();
const parsed = JSON.parse(content);
expect(Array.isArray(parsed.argv_display)).toBe(true);
expect(parsed.argv_display).toEqual(['node', 'script.mjs', '--date', '2026-04-18']);
});
test('does NOT log env values', () => {
logShellSubmission({
caller: 'cli', remote: false, job_id: 1, cwd: '/tmp', cmd_display: 'echo ok',
});
const files = fs.readdirSync(tmpDir);
const content = fs.readFileSync(path.join(tmpDir, files[0]), 'utf8');
expect(content).not.toContain('env');
});
test('write failure (EACCES) is non-blocking', () => {
// Point at a read-only target. /dev/null is not a directory.
process.env.GBRAIN_AUDIT_DIR = '/dev/null/not-a-dir';
// Should not throw — failures go to stderr.
expect(() => logShellSubmission({
caller: 'cli', remote: false, job_id: 1, cwd: '/tmp',
})).not.toThrow();
});
});
// ---- shell handler: UTF-8-safe output truncation ---------------------------
describe('shell handler: output truncation', () => {
test('stdout > 64KB is truncated and marker is prepended', async () => {
// Emit ~100KB of stdout to force truncation
const res = await shellHandler(makeCtx({
cmd: `yes ok | head -c 100000`,
cwd: '/tmp',
})) as any;
expect(res.exit_code).toBe(0);
expect(res.stdout_tail).toMatch(/^\[truncated \d+ bytes\]/);
expect(res.stdout_tail.length).toBeGreaterThan(0);
// Tail must contain characters we emitted
expect(res.stdout_tail).toContain('ok');
});
});
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import { describe, test, expect } from 'bun:test';
import {
shouldExclude,
deriveDomain,
formatOrphansText,
type OrphanPage,
type OrphanResult,
} from '../src/commands/orphans.ts';
// --- shouldExclude ---
describe('shouldExclude', () => {
test('excludes pseudo-page _atlas', () => {
expect(shouldExclude('_atlas')).toBe(true);
});
test('excludes pseudo-page _index', () => {
expect(shouldExclude('_index')).toBe(true);
});
test('excludes pseudo-page _stats', () => {
expect(shouldExclude('_stats')).toBe(true);
});
test('excludes pseudo-page _orphans', () => {
expect(shouldExclude('_orphans')).toBe(true);
});
test('excludes pseudo-page _scratch', () => {
expect(shouldExclude('_scratch')).toBe(true);
});
test('excludes pseudo-page claude', () => {
expect(shouldExclude('claude')).toBe(true);
});
test('excludes auto-generated _index suffix', () => {
expect(shouldExclude('companies/_index')).toBe(true);
expect(shouldExclude('people/_index')).toBe(true);
});
test('excludes auto-generated /log suffix', () => {
expect(shouldExclude('projects/acme/log')).toBe(true);
});
test('excludes raw source slugs', () => {
expect(shouldExclude('companies/acme/raw/crustdata')).toBe(true);
});
test('excludes deny-prefix: output/', () => {
expect(shouldExclude('output/2026-q1')).toBe(true);
});
test('excludes deny-prefix: dashboards/', () => {
expect(shouldExclude('dashboards/metrics')).toBe(true);
});
test('excludes deny-prefix: scripts/', () => {
expect(shouldExclude('scripts/ingest-runner')).toBe(true);
});
test('excludes deny-prefix: templates/', () => {
expect(shouldExclude('templates/meeting-note')).toBe(true);
});
test('excludes deny-prefix: openclaw/config/', () => {
expect(shouldExclude('openclaw/config/agent')).toBe(true);
});
test('excludes first-segment: scratch', () => {
expect(shouldExclude('scratch/idea-dump')).toBe(true);
});
test('excludes first-segment: thoughts', () => {
expect(shouldExclude('thoughts/2026-04-17')).toBe(true);
});
test('excludes first-segment: catalog', () => {
expect(shouldExclude('catalog/tools')).toBe(true);
});
test('excludes first-segment: entities', () => {
expect(shouldExclude('entities/product-hunt')).toBe(true);
});
test('does NOT exclude a normal content page', () => {
expect(shouldExclude('companies/acme')).toBe(false);
expect(shouldExclude('people/jane-doe')).toBe(false);
expect(shouldExclude('projects/gbrain')).toBe(false);
});
test('does NOT exclude a page ending with log-like text that is not /log', () => {
expect(shouldExclude('devlog')).toBe(false);
expect(shouldExclude('changelog')).toBe(false);
});
});
// --- deriveDomain ---
describe('deriveDomain', () => {
test('uses frontmatter domain when present', () => {
expect(deriveDomain('companies', 'companies/acme')).toBe('companies');
});
test('falls back to first slug segment', () => {
expect(deriveDomain(null, 'people/jane-doe')).toBe('people');
expect(deriveDomain(undefined, 'projects/gbrain')).toBe('projects');
});
test('returns root for single-segment slugs with no frontmatter', () => {
expect(deriveDomain(null, 'readme')).toBe('readme');
});
test('ignores empty-string frontmatter domain', () => {
expect(deriveDomain('', 'people/alice')).toBe('people');
});
test('ignores whitespace-only frontmatter domain', () => {
expect(deriveDomain(' ', 'people/alice')).toBe('people');
});
});
// --- formatOrphansText ---
describe('formatOrphansText', () => {
function makeResult(orphans: OrphanPage[], overrides?: Partial<OrphanResult>): OrphanResult {
return {
orphans,
total_orphans: orphans.length,
total_linkable: orphans.length + 50,
total_pages: orphans.length + 60,
excluded: 10,
...overrides,
};
}
test('shows summary line', () => {
const result = makeResult([]);
const out = formatOrphansText(result);
expect(out).toContain('0 orphans out of');
expect(out).toContain('total');
expect(out).toContain('excluded');
});
test('shows "No orphan pages found." when empty', () => {
const out = formatOrphansText(makeResult([]));
expect(out).toContain('No orphan pages found.');
});
test('groups orphans by domain', () => {
const orphans: OrphanPage[] = [
{ slug: 'companies/acme', title: 'Acme Corp', domain: 'companies' },
{ slug: 'people/alice', title: 'Alice', domain: 'people' },
{ slug: 'companies/beta', title: 'Beta Inc', domain: 'companies' },
];
const out = formatOrphansText(makeResult(orphans));
expect(out).toContain('[companies]');
expect(out).toContain('[people]');
// companies section should appear before people (alphabetical)
const companiesIdx = out.indexOf('[companies]');
const peopleIdx = out.indexOf('[people]');
expect(companiesIdx).toBeLessThan(peopleIdx);
});
test('sorts orphans alphabetically within each domain group', () => {
const orphans: OrphanPage[] = [
{ slug: 'companies/zeta', title: 'Zeta', domain: 'companies' },
{ slug: 'companies/alpha', title: 'Alpha', domain: 'companies' },
{ slug: 'companies/beta', title: 'Beta', domain: 'companies' },
];
const out = formatOrphansText(makeResult(orphans));
const alphaIdx = out.indexOf('companies/alpha');
const betaIdx = out.indexOf('companies/beta');
const zetaIdx = out.indexOf('companies/zeta');
expect(alphaIdx).toBeLessThan(betaIdx);
expect(betaIdx).toBeLessThan(zetaIdx);
});
test('includes slug and title in output', () => {
const orphans: OrphanPage[] = [
{ slug: 'companies/acme', title: 'Acme Corp', domain: 'companies' },
];
const out = formatOrphansText(makeResult(orphans));
expect(out).toContain('companies/acme');
expect(out).toContain('Acme Corp');
});
test('summary line shows correct numbers', () => {
const orphans: OrphanPage[] = [
{ slug: 'a/b', title: 'B', domain: 'a' },
{ slug: 'a/c', title: 'C', domain: 'a' },
];
const result: OrphanResult = {
orphans,
total_orphans: 2,
total_linkable: 100,
total_pages: 120,
excluded: 20,
};
const out = formatOrphansText(result);
expect(out).toContain('2 orphans out of 100 linkable pages (120 total; 20 excluded)');
});
});
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/**
* Post-write validator lint tests (PR 2.5 minimal integration).
*
* Feature-flag gated; default OFF means zero behavior change to put_page.
* When ON, runs the 4 BrainWriter validators and logs findings without
* rejecting the write. Strict-mode flip is out of scope; deferred per
* CEO plan.
*/
import { describe, test, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
import { tmpdir } from 'os';
import { mkdtempSync, rmSync } from 'fs';
import { join } from 'path';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import type { BrainEngine } from '../src/core/engine.ts';
import { runPostWriteLint, isLintOnPutPageEnabled } from '../src/core/output/post-write.ts';
let engine: BrainEngine;
let dbDir: string;
beforeAll(async () => {
dbDir = mkdtempSync(join(tmpdir(), 'postwrite-'));
engine = new PGLiteEngine();
await engine.connect({ engine: 'pglite', database_path: dbDir });
await engine.initSchema();
});
afterAll(async () => {
await engine.disconnect();
rmSync(dbDir, { recursive: true, force: true });
});
async function reset(): Promise<void> {
await engine.executeRaw('TRUNCATE pages, links, content_chunks, timeline_entries, tags, raw_data, page_versions, ingest_log RESTART IDENTITY CASCADE');
await engine.executeRaw(`DELETE FROM config WHERE key = 'writer.lint_on_put_page'`);
}
describe('isLintOnPutPageEnabled', () => {
beforeEach(async () => { await reset(); });
test('defaults false when config unset', async () => {
expect(await isLintOnPutPageEnabled(engine)).toBe(false);
});
test('true when config = true', async () => {
await engine.setConfig('writer.lint_on_put_page', 'true');
expect(await isLintOnPutPageEnabled(engine)).toBe(true);
});
test('true when config = 1', async () => {
await engine.setConfig('writer.lint_on_put_page', '1');
expect(await isLintOnPutPageEnabled(engine)).toBe(true);
});
test('false for any other value', async () => {
await engine.setConfig('writer.lint_on_put_page', 'maybe');
expect(await isLintOnPutPageEnabled(engine)).toBe(false);
});
test('false when config = false', async () => {
await engine.setConfig('writer.lint_on_put_page', 'false');
expect(await isLintOnPutPageEnabled(engine)).toBe(false);
});
});
describe('runPostWriteLint', () => {
beforeEach(async () => { await reset(); });
test('flag disabled → returns ran=false, no findings', async () => {
await engine.putPage('people/x', {
type: 'person', title: 'X', compiled_truth: 'X has a bare factual paragraph without a citation.',
frontmatter: {},
});
const r = await runPostWriteLint(engine, 'people/x');
expect(r.ran).toBe(false);
expect(r.skippedReason).toBe('flag_disabled');
expect(r.findings).toEqual([]);
});
test('page not found → returns ran=false', async () => {
const r = await runPostWriteLint(engine, 'people/ghost', { force: true });
expect(r.ran).toBe(false);
expect(r.skippedReason).toBe('page_not_found');
});
test('validate:false frontmatter → skipped (grandfather)', async () => {
await engine.putPage('people/old', {
type: 'person', title: 'Old', compiled_truth: 'Lots of factual paragraphs without citations.',
frontmatter: { validate: false },
});
const r = await runPostWriteLint(engine, 'people/old', { force: true });
expect(r.ran).toBe(false);
expect(r.skippedReason).toBe('validate_false_frontmatter');
});
test('forces run even when flag is off', async () => {
await engine.putPage('people/y', {
type: 'person', title: 'Y', compiled_truth: 'Y raised money [Source: X, 2026-04-18](https://x.com/y).',
frontmatter: {},
});
const r = await runPostWriteLint(engine, 'people/y', { force: true, noLog: true });
expect(r.ran).toBe(true);
});
test('flag on + bad page → findings include citation error', async () => {
await engine.setConfig('writer.lint_on_put_page', 'true');
await engine.putPage('people/bad', {
type: 'person', title: 'Bad', compiled_truth: 'Bad raised $5M in Series A from Sequoia without citation.',
frontmatter: {},
});
const r = await runPostWriteLint(engine, 'people/bad', { noLog: true });
expect(r.ran).toBe(true);
expect(r.findings.length).toBeGreaterThan(0);
const citationError = r.findings.find(f => f.validator === 'citation' && f.severity === 'error');
expect(citationError).toBeDefined();
});
test('flag on + clean page → zero findings', async () => {
await engine.setConfig('writer.lint_on_put_page', 'true');
await engine.putPage('people/clean', {
type: 'person', title: 'Clean',
compiled_truth: '## See Also\n- [Source: X/clean, 2026-04-18](https://x.com/clean/status/1)',
frontmatter: {},
});
const r = await runPostWriteLint(engine, 'people/clean', { noLog: true });
expect(r.ran).toBe(true);
expect(r.findings).toEqual([]);
});
});
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/**
* postgres-engine.ts source-level guardrails.
*
* Live Postgres coverage for search paths lives in test/e2e/search-quality.test.ts.
* This file stays fast and DB-free: it inspects the source of
* src/core/postgres-engine.ts to lock in decisions that protect the
* shared connection pool from per-request GUC leaks.
*
* Regression: R6-F006 / R4-F002.
* searchKeyword and searchVector used to call bare
* await sql`SET statement_timeout = '8s'`
* ...query...
* finally { await sql`SET statement_timeout = '0'` }
* against the shared pool. Each tagged template picks an arbitrary
* connection, so the SET, the query, and the reset could all land on
* DIFFERENT connections. Worst case: the 8s GUC sticks on some pooled
* connection and clips the next caller's long-running query; or the
* reset to 0 lands on a connection that other code expected to be
* protected. The fix wraps each query in sql.begin() and uses
* SET LOCAL so the GUC is transaction-scoped and auto-resets on
* COMMIT/ROLLBACK, regardless of error path.
*/
import { describe, test, expect } from 'bun:test';
import { readFileSync } from 'fs';
import { join } from 'path';
const SRC = readFileSync(
join(import.meta.dir, '..', 'src', 'core', 'postgres-engine.ts'),
'utf-8',
);
describe('postgres-engine / search path timeout isolation', () => {
test('no bare `SET statement_timeout` statement survives', () => {
// Strip comments so the commentary mentioning the anti-pattern does
// not trigger a false positive. Block-comment + line-comment strip.
const stripped = SRC
.replace(/\/\*[\s\S]*?\*\//g, '')
.replace(/(^|\s)\/\/[^\n]*/g, '$1');
// Match a tagged-template statement of the form
// sql`SET statement_timeout = ...`
// that is NOT preceded by LOCAL. This is the exact shape that bleeds
// onto pooled connections; SET LOCAL is safe inside a transaction.
const bare = stripped.match(
/sql`\s*SET\s+(?!LOCAL\s)statement_timeout\b[^`]*`/gi,
);
expect(bare).toBeNull();
});
test('searchKeyword wraps its query in sql.begin()', () => {
const fn = extractMethod(SRC, 'searchKeyword');
expect(fn).toMatch(/sql\.begin\s*\(\s*async\s+sql\s*=>/);
});
test('searchVector wraps its query in sql.begin()', () => {
const fn = extractMethod(SRC, 'searchVector');
expect(fn).toMatch(/sql\.begin\s*\(\s*async\s+sql\s*=>/);
});
test('both search methods use SET LOCAL for the timeout', () => {
const keyword = extractMethod(SRC, 'searchKeyword');
const vector = extractMethod(SRC, 'searchVector');
expect(keyword).toMatch(/SET\s+LOCAL\s+statement_timeout/);
expect(vector).toMatch(/SET\s+LOCAL\s+statement_timeout/);
});
test('neither search method clears the timeout with `SET statement_timeout = 0`', () => {
// The reset-to-zero pattern was the other half of the leak: if SET
// LOCAL is in play, COMMIT handles the reset and an explicit
// `SET statement_timeout = '0'` would itself leak the GUC change
// onto the returned connection. Strip comments first so the
// commentary in the method itself (which quotes the anti-pattern
// to explain it) does not trigger a false positive.
const keyword = stripComments(extractMethod(SRC, 'searchKeyword'));
const vector = stripComments(extractMethod(SRC, 'searchVector'));
expect(keyword).not.toMatch(/SET\s+statement_timeout\s*=\s*['"]?0/);
expect(vector).not.toMatch(/SET\s+statement_timeout\s*=\s*['"]?0/);
});
});
function stripComments(s: string): string {
return s
.replace(/\/\*[\s\S]*?\*\//g, '')
.replace(/(^|\s)\/\/[^\n]*/g, '$1');
}
// extractMethod grabs the body of a class method by brace-matching from
// its opening line. Returns the method body up to the matching closing
// brace. Good enough for the small number of methods in this file.
function extractMethod(source: string, name: string): string {
// Find "async <name>(" at method-definition indentation (2 spaces).
const openRe = new RegExp(`^\\s+async\\s+${name}\\s*\\(`, 'm');
const match = openRe.exec(source);
if (!match) {
throw new Error(`method ${name} not found in postgres-engine.ts`);
}
// Scan forward balancing braces.
let i = source.indexOf('{', match.index);
if (i < 0) throw new Error(`no opening brace for ${name}`);
const start = i;
let depth = 0;
for (; i < source.length; i++) {
const c = source[i];
if (c === '{') depth++;
else if (c === '}') {
depth--;
if (depth === 0) return source.slice(start, i + 1);
}
}
throw new Error(`unbalanced braces in ${name}`);
}
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/**
* Resolver SDK tests interface contract + registry + 2 reference builtins.
*
* No network. url_reachable is tested via global fetch mock; x_handle_to_tweet
* via mocked fetch + env. Real-network E2E (if any) lives in test/e2e/.
*/
import { describe, test, expect, beforeEach, afterEach } from 'bun:test';
import {
ResolverRegistry,
ResolverError,
getDefaultRegistry,
_resetDefaultRegistry,
} from '../src/core/resolvers/index.ts';
import type {
Resolver,
ResolverContext,
ResolverRequest,
ResolverResult,
} from '../src/core/resolvers/index.ts';
import { urlReachableResolver, checkDnsRebinding } from '../src/core/resolvers/builtin/url-reachable.ts';
import { xHandleToTweetResolver, computeBackoffMs } from '../src/core/resolvers/builtin/x-api/handle-to-tweet.ts';
// ---------------------------------------------------------------------------
// Helpers
// ---------------------------------------------------------------------------
function makeCtx(overrides: Partial<ResolverContext> = {}): ResolverContext {
return {
config: {},
logger: { info: () => {}, warn: () => {}, error: () => {}, debug: () => {} },
requestId: 'test',
remote: false,
...overrides,
};
}
// Tiny fake resolver for contract tests
const echoResolver: Resolver<{ v: string }, { v: string }> = {
id: 'echo',
cost: 'free',
backend: 'local',
description: 'Echo',
async available() { return true; },
async resolve(req: ResolverRequest<{ v: string }>): Promise<ResolverResult<{ v: string }>> {
return {
value: { v: req.input.v },
confidence: 1,
source: 'local',
fetchedAt: new Date(),
};
},
};
// ---------------------------------------------------------------------------
// Registry tests
// ---------------------------------------------------------------------------
describe('ResolverRegistry', () => {
let reg: ResolverRegistry;
beforeEach(() => {
reg = new ResolverRegistry();
});
test('starts empty', () => {
expect(reg.size()).toBe(0);
expect(reg.list()).toEqual([]);
});
test('register + get + has', () => {
reg.register(echoResolver);
expect(reg.size()).toBe(1);
expect(reg.has('echo')).toBe(true);
expect(reg.get('echo').id).toBe('echo');
});
test('register rejects duplicate id', () => {
reg.register(echoResolver);
expect(() => reg.register(echoResolver)).toThrow(ResolverError);
try {
reg.register(echoResolver);
} catch (e) {
expect((e as ResolverError).code).toBe('already_registered');
}
});
test('register rejects empty id', () => {
expect(() => reg.register({ ...echoResolver, id: '' })).toThrow(ResolverError);
});
test('get throws not_found for unknown id', () => {
try {
reg.get('nope');
throw new Error('should have thrown');
} catch (e) {
expect(e).toBeInstanceOf(ResolverError);
expect((e as ResolverError).code).toBe('not_found');
}
});
test('list returns summaries sorted by id', () => {
reg.register(echoResolver);
reg.register({ ...echoResolver, id: 'alpha' });
const list = reg.list();
expect(list.map(r => r.id)).toEqual(['alpha', 'echo']);
expect(list[0].cost).toBe('free');
expect(list[0].backend).toBe('local');
});
test('list filters by cost', () => {
reg.register(echoResolver); // free
reg.register({ ...echoResolver, id: 'paid-one', cost: 'paid' });
expect(reg.list({ cost: 'paid' }).map(r => r.id)).toEqual(['paid-one']);
expect(reg.list({ cost: 'free' }).map(r => r.id)).toEqual(['echo']);
});
test('list filters by backend', () => {
reg.register(echoResolver);
reg.register({ ...echoResolver, id: 'x-one', backend: 'x-api-v2' });
expect(reg.list({ backend: 'x-api-v2' }).map(r => r.id)).toEqual(['x-one']);
});
test('resolve returns result', async () => {
reg.register(echoResolver);
const r = await reg.resolve('echo', { v: 'hi' }, makeCtx());
expect(r.value).toEqual({ v: 'hi' });
expect(r.confidence).toBe(1);
});
test('resolve throws not_found for unknown id', async () => {
try {
await reg.resolve('nope', {}, makeCtx());
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('not_found');
}
});
test('resolve throws unavailable when available() returns false', async () => {
reg.register({
...echoResolver,
id: 'blocked',
async available() { return false; },
});
try {
await reg.resolve('blocked', {}, makeCtx());
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('unavailable');
}
});
test('clear empties registry', () => {
reg.register(echoResolver);
reg.clear();
expect(reg.size()).toBe(0);
});
});
describe('getDefaultRegistry', () => {
beforeEach(() => _resetDefaultRegistry());
afterEach(() => _resetDefaultRegistry());
test('returns a singleton', () => {
const a = getDefaultRegistry();
const b = getDefaultRegistry();
expect(a).toBe(b);
});
test('_resetDefaultRegistry gives a fresh instance', () => {
const a = getDefaultRegistry();
a.register(echoResolver);
_resetDefaultRegistry();
const b = getDefaultRegistry();
expect(b).not.toBe(a);
expect(b.size()).toBe(0);
});
});
// ---------------------------------------------------------------------------
// url_reachable builtin
// ---------------------------------------------------------------------------
describe('url_reachable resolver', () => {
const originalFetch = globalThis.fetch;
afterEach(() => {
globalThis.fetch = originalFetch;
});
test('available() is true', async () => {
expect(await urlReachableResolver.available(makeCtx())).toBe(true);
});
test('schema: id + cost + backend match contract', () => {
expect(urlReachableResolver.id).toBe('url_reachable');
expect(urlReachableResolver.cost).toBe('free');
expect(urlReachableResolver.backend).toBe('head-check');
});
test('blocks localhost via SSRF guard', async () => {
const r = await urlReachableResolver.resolve({
input: { url: 'http://127.0.0.1:1' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(false);
expect(r.value.reason).toMatch(/internal|private/i);
});
test('blocks RFC1918 addresses', async () => {
const r = await urlReachableResolver.resolve({
input: { url: 'http://10.0.0.1/' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(false);
});
test('blocks AWS metadata endpoint', async () => {
const r = await urlReachableResolver.resolve({
input: { url: 'http://169.254.169.254/latest/meta-data/' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(false);
});
test('blocks non-http(s) schemes', async () => {
const r = await urlReachableResolver.resolve({
input: { url: 'file:///etc/passwd' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(false);
});
test('throws schema error for empty url', async () => {
try {
await urlReachableResolver.resolve({ input: { url: '' }, context: makeCtx() });
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('schema');
}
});
test('200 response → reachable=true', async () => {
globalThis.fetch = (async () => new Response('', { status: 200 })) as typeof fetch;
const r = await urlReachableResolver.resolve({
input: { url: 'https://example.com/ok' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(true);
expect(r.value.status).toBe(200);
});
test('404 response → reachable=false with status + reason', async () => {
globalThis.fetch = (async () => new Response('', { status: 404 })) as typeof fetch;
const r = await urlReachableResolver.resolve({
input: { url: 'https://example.com/dead' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(false);
expect(r.value.status).toBe(404);
expect(r.value.reason).toMatch(/HTTP 404/);
});
test('HEAD 405 falls back to GET', async () => {
let callCount = 0;
globalThis.fetch = (async (_url: string, init?: RequestInit) => {
callCount++;
if (init?.method === 'HEAD') return new Response('', { status: 405 });
return new Response('ok', { status: 200 });
}) as typeof fetch;
const r = await urlReachableResolver.resolve({
input: { url: 'https://example.com/post-only' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(true);
expect(callCount).toBe(2);
});
test('follows redirect to external URL', async () => {
const responses = [
new Response('', { status: 301, headers: { location: 'https://example.org/final' } }),
new Response('', { status: 200 }),
];
let i = 0;
globalThis.fetch = (async () => responses[i++]) as typeof fetch;
const r = await urlReachableResolver.resolve({
input: { url: 'https://example.com/redirect' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(true);
expect(r.value.finalUrl).toBe('https://example.org/final');
});
test('blocks redirect to internal URL (per-hop SSRF revalidation)', async () => {
globalThis.fetch = (async () => new Response('', {
status: 302,
headers: { location: 'http://127.0.0.1/admin' },
})) as typeof fetch;
const r = await urlReachableResolver.resolve({
input: { url: 'https://example.com/redirects-to-local' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(false);
expect(r.value.reason).toMatch(/redirect to blocked/i);
});
test('fetch network failure → reachable=false, confidence=1', async () => {
globalThis.fetch = (async () => { throw new TypeError('fetch failed'); }) as typeof fetch;
const r = await urlReachableResolver.resolve({
input: { url: 'https://nonexistent.example/' },
context: makeCtx(),
});
expect(r.value.reachable).toBe(false);
expect(r.value.reason).toMatch(/fetch error/);
expect(r.confidence).toBe(1);
});
test('checkDnsRebinding: skips IP literals', async () => {
expect(await checkDnsRebinding('http://8.8.8.8/')).toBeNull();
expect(await checkDnsRebinding('http://127.0.0.1/')).toBeNull();
expect(await checkDnsRebinding('http://[::1]/')).toBeNull();
});
test('checkDnsRebinding: returns null for unparseable URL', async () => {
expect(await checkDnsRebinding('not a url')).toBeNull();
});
test('checkDnsRebinding: returns null on DNS failure (surface via fetch)', async () => {
// Nonexistent TLD; DNS lookup fails, we let the fetch surface the error.
const r = await checkDnsRebinding('http://definitely-not-a-real-tld.invalidtld123/');
expect(r).toBeNull();
});
test('AbortSignal fires mid-flight → ResolverError(aborted)', async () => {
const ac = new AbortController();
globalThis.fetch = (async () => {
const err = new Error('aborted');
err.name = 'AbortError';
throw err;
}) as typeof fetch;
ac.abort();
try {
await urlReachableResolver.resolve({
input: { url: 'https://example.com/' },
context: makeCtx({ signal: ac.signal }),
});
throw new Error('should have thrown');
} catch (e) {
expect(e).toBeInstanceOf(ResolverError);
expect((e as ResolverError).code).toBe('aborted');
}
});
});
// ---------------------------------------------------------------------------
// x_handle_to_tweet builtin
// ---------------------------------------------------------------------------
describe('x_handle_to_tweet resolver', () => {
const originalFetch = globalThis.fetch;
const originalToken = process.env.X_API_BEARER_TOKEN;
beforeEach(() => {
delete process.env.X_API_BEARER_TOKEN;
});
afterEach(() => {
globalThis.fetch = originalFetch;
if (originalToken) process.env.X_API_BEARER_TOKEN = originalToken;
else delete process.env.X_API_BEARER_TOKEN;
});
// ---- computeBackoffMs ----
test('computeBackoffMs: honors Retry-After seconds', () => {
const r = new Response('', { status: 429, headers: { 'retry-after': '10' } });
expect(computeBackoffMs(r)).toBe(10_000);
});
test('computeBackoffMs: honors Retry-After HTTP-date', () => {
const now = 1_700_000_000_000; // 2023-11-14T22:13:20Z
const future = new Date(now + 7_000).toUTCString();
const r = new Response('', { status: 429, headers: { 'retry-after': future } });
const ms = computeBackoffMs(r, now);
expect(ms).toBeGreaterThanOrEqual(6_000);
expect(ms).toBeLessThanOrEqual(8_000);
});
test('computeBackoffMs: honors x-rate-limit-reset epoch seconds', () => {
const now = 1_700_000_000_000;
const resetSec = Math.floor(now / 1000) + 15;
const r = new Response('', { status: 429, headers: { 'x-rate-limit-reset': String(resetSec) } });
expect(computeBackoffMs(r, now)).toBeGreaterThanOrEqual(14_000);
expect(computeBackoffMs(r, now)).toBeLessThanOrEqual(16_000);
});
test('computeBackoffMs: takes MAX when both headers present', () => {
const now = 1_700_000_000_000;
const resetSec = Math.floor(now / 1000) + 30;
const r = new Response('', {
status: 429,
headers: { 'retry-after': '5', 'x-rate-limit-reset': String(resetSec) },
});
const ms = computeBackoffMs(r, now);
expect(ms).toBeGreaterThanOrEqual(29_000);
});
test('computeBackoffMs: clamps to floor 2s when no headers', () => {
const r = new Response('', { status: 429 });
expect(computeBackoffMs(r)).toBeGreaterThanOrEqual(2_000);
});
test('computeBackoffMs: clamps to ceiling 60s', () => {
const now = 1_700_000_000_000;
const resetSec = Math.floor(now / 1000) + 600; // 10 min
const r = new Response('', { status: 429, headers: { 'x-rate-limit-reset': String(resetSec) } });
expect(computeBackoffMs(r, now)).toBeLessThanOrEqual(60_000);
});
test('available() false when token missing', async () => {
expect(await xHandleToTweetResolver.available(makeCtx())).toBe(false);
});
test('available() true when token in env', async () => {
process.env.X_API_BEARER_TOKEN = 'fake-token';
expect(await xHandleToTweetResolver.available(makeCtx())).toBe(true);
});
test('available() true when token in ctx.config', async () => {
const ctx = makeCtx({ config: { x_api_bearer_token: 'fake-token' } });
expect(await xHandleToTweetResolver.available(ctx)).toBe(true);
});
test('rejects invalid handle (schema)', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
try {
await xHandleToTweetResolver.resolve({
input: { handle: 'bad handle with spaces' },
context: makeCtx(),
});
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('schema');
}
});
test('rejects handle longer than 15 chars', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
try {
await xHandleToTweetResolver.resolve({
input: { handle: 'a'.repeat(16) },
context: makeCtx(),
});
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('schema');
}
});
test('throws unavailable when no token at resolve time', async () => {
try {
await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan' },
context: makeCtx(),
});
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('unavailable');
}
});
test('zero candidates → confidence 0', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
globalThis.fetch = (async () => new Response(JSON.stringify({ data: [], meta: { result_count: 0 } }), {
status: 200,
headers: { 'content-type': 'application/json' },
})) as typeof fetch;
const r = await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan', keywords: 'nothing matches' },
context: makeCtx(),
});
expect(r.confidence).toBe(0);
expect(r.value.candidates).toEqual([]);
expect(r.value.url).toBeUndefined();
});
test('single strong match → confidence >= 0.8 (auto-repair bucket)', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
globalThis.fetch = (async () => new Response(JSON.stringify({
data: [
{ id: '123', text: 'talking about building gbrain today', created_at: '2026-04-18T00:00:00Z' },
],
}), { status: 200, headers: { 'content-type': 'application/json' } })) as typeof fetch;
const r = await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan', keywords: 'building gbrain' },
context: makeCtx(),
});
expect(r.confidence).toBeGreaterThanOrEqual(0.8);
expect(r.value.url).toBe('https://x.com/garrytan/status/123');
expect(r.value.tweet_id).toBe('123');
});
test('single weak-match → confidence in 0.5-0.8 review range', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
globalThis.fetch = (async () => new Response(JSON.stringify({
data: [{ id: '1', text: 'something unrelated entirely', created_at: '2026-04-18T00:00:00Z' }],
}), { status: 200, headers: { 'content-type': 'application/json' } })) as typeof fetch;
const r = await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan', keywords: 'gbrain knowledge runtime specific terms' },
context: makeCtx(),
});
expect(r.confidence).toBeGreaterThanOrEqual(0.5);
expect(r.confidence).toBeLessThan(0.8);
});
test('many ambiguous candidates → confidence < 0.5 (skip bucket)', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
const data = Array.from({ length: 10 }, (_, i) => ({
id: String(i + 1),
text: 'short noise text ' + i,
created_at: '2026-04-18T00:00:00Z',
}));
globalThis.fetch = (async () => new Response(JSON.stringify({ data }), {
status: 200, headers: { 'content-type': 'application/json' },
})) as typeof fetch;
const r = await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan', keywords: 'completely different signal words unlikely to match' },
context: makeCtx(),
});
expect(r.confidence).toBeLessThan(0.5);
expect(r.value.candidates.length).toBe(10);
expect(r.value.url).toBeUndefined(); // gated by >= 0.5
});
test('401 → ResolverError(auth)', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
globalThis.fetch = (async () => new Response('unauthorized', { status: 401 })) as typeof fetch;
try {
await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan' },
context: makeCtx(),
});
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('auth');
}
});
test('403 → ResolverError(auth)', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
globalThis.fetch = (async () => new Response('forbidden', { status: 403 })) as typeof fetch;
try {
await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan' },
context: makeCtx(),
});
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('auth');
}
});
test('500 → ResolverError(upstream) with body snippet', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
globalThis.fetch = (async () => new Response('internal err', { status: 500 })) as typeof fetch;
try {
await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan' },
context: makeCtx(),
});
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('upstream');
expect((e as ResolverError).message).toMatch(/HTTP 500/);
}
});
test('429 retries then surfaces rate_limited', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
let calls = 0;
globalThis.fetch = (async () => {
calls++;
return new Response('rate', { status: 429, headers: { 'retry-after': '0' } });
}) as typeof fetch;
try {
await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan' },
context: makeCtx(),
});
throw new Error('should have thrown');
} catch (e) {
expect((e as ResolverError).code).toBe('rate_limited');
expect(calls).toBeGreaterThanOrEqual(3); // initial + 2 retries
}
});
test('strips X operators from keyword input (injection defense)', async () => {
process.env.X_API_BEARER_TOKEN = 'fake';
let capturedUrl = '';
globalThis.fetch = (async (url: string) => {
capturedUrl = url;
return new Response(JSON.stringify({ data: [] }), {
status: 200, headers: { 'content-type': 'application/json' },
});
}) as typeof fetch;
await xHandleToTweetResolver.resolve({
input: { handle: 'garrytan', keywords: 'from:evil_user lang:ja to:someone normal words' },
context: makeCtx(),
});
// Decoded query should still have handle but not extra operators.
// URLSearchParams encodes spaces as '+', so use token-level assertions.
const params = new URL(capturedUrl).searchParams;
const query = params.get('query') ?? '';
expect(query).toContain('from:garrytan');
expect(query).not.toContain('from:evil_user');
expect(query).not.toContain('lang:ja');
expect(query).not.toContain('to:someone');
expect(query).toContain('normal');
expect(query).toContain('words');
});
});
+15
View File
@@ -190,3 +190,18 @@ describe('buildSyncManifest edge cases', () => {
expect(manifest.renamed).toEqual([]);
});
});
describe('sync regression — #132 nested transaction deadlock', () => {
test('src/commands/sync.ts does not wrap the add/modify loop in engine.transaction()', async () => {
const source = await Bun.file(new URL('../src/commands/sync.ts', import.meta.url)).text();
const loopStart = source.indexOf('for (const path of [...filtered.added, ...filtered.modified]');
expect(loopStart).toBeGreaterThan(-1);
const prelude = source.slice(0, loopStart);
const lastTxIdx = prelude.lastIndexOf('engine.transaction');
if (lastTxIdx !== -1) {
const lineStart = prelude.lastIndexOf('\n', lastTxIdx) + 1;
const line = prelude.slice(lineStart, prelude.indexOf('\n', lastTxIdx));
expect(line.trim().startsWith('//')).toBe(true);
}
});
});
+28 -1
View File
@@ -1,5 +1,5 @@
import { describe, test, expect } from 'bun:test';
import { validateSlug, contentHash, parseEmbedding, rowToPage, rowToChunk, rowToSearchResult } from '../src/core/utils.ts';
import { validateSlug, contentHash, parseEmbedding, tryParseEmbedding, rowToPage, rowToChunk, rowToSearchResult } from '../src/core/utils.ts';
describe('validateSlug', () => {
test('accepts valid slugs', () => {
@@ -146,6 +146,33 @@ describe('parseEmbedding', () => {
});
});
describe('tryParseEmbedding', () => {
test('returns null on corrupt embedding instead of throwing', () => {
expect(tryParseEmbedding('[0.1,NaN,0.3]')).toBeNull();
expect(tryParseEmbedding(['bad' as unknown as number, 1])).toBeNull();
});
test('delegates happy path to parseEmbedding', () => {
const out = tryParseEmbedding('[0.1, 0.2]');
expect(out).toBeInstanceOf(Float32Array);
expect(out?.length).toBe(2);
});
test('warns once per session on corrupt rows', () => {
const orig = console.warn;
let warnCount = 0;
console.warn = () => { warnCount++; };
try {
tryParseEmbedding('[NaN]');
tryParseEmbedding('[NaN]');
tryParseEmbedding('[NaN]');
} finally {
console.warn = orig;
}
expect(warnCount).toBeLessThanOrEqual(1);
});
});
describe('rowToSearchResult', () => {
test('coerces score to number', () => {
const r = rowToSearchResult({
+714
View File
@@ -0,0 +1,714 @@
/**
* BrainWriter + Scaffolder + SlugRegistry + 4 validators.
*
* Runs against PGLite in-memory. No network. Engine lifecycle per-suite
* via beforeAll/afterAll so migrations apply once.
*/
import { describe, test, expect, beforeAll, afterAll, beforeEach } from 'bun:test';
import { tmpdir } from 'os';
import { mkdtempSync, rmSync } from 'fs';
import { join } from 'path';
import { PGLiteEngine } from '../src/core/pglite-engine.ts';
import type { BrainEngine } from '../src/core/engine.ts';
import type { ResolverContext } from '../src/core/resolvers/index.ts';
import {
BrainWriter,
WriteError,
type ValidationReport,
} from '../src/core/output/writer.ts';
import { SlugRegistry, SlugRegistryError } from '../src/core/output/slug-registry.ts';
import {
tweetCitation,
emailCitation,
sourceCitation,
entityLink,
timelineLine,
ScaffoldError,
} from '../src/core/output/scaffold.ts';
import {
citationValidator,
linkValidator,
backLinkValidator,
tripleHrValidator,
registerBuiltinValidators,
} from '../src/core/output/validators/index.ts';
import {
splitParagraphs,
} from '../src/core/output/validators/citation.ts';
import {
normalizeToSlug,
isExternalUrl,
isNonBrainRef,
} from '../src/core/output/validators/link.ts';
// ---------------------------------------------------------------------------
// Engine fixture
// ---------------------------------------------------------------------------
let engine: BrainEngine;
let dbDir: string;
beforeAll(async () => {
dbDir = mkdtempSync(join(tmpdir(), 'writer-test-'));
engine = new PGLiteEngine();
await engine.connect({ engine: 'pglite', database_path: dbDir });
await engine.initSchema();
});
afterAll(async () => {
await engine.disconnect();
rmSync(dbDir, { recursive: true, force: true });
});
// Reset DB between tests by truncating — cheaper than tearing down PGLite.
async function reset(): Promise<void> {
await engine.executeRaw('TRUNCATE pages, links, content_chunks, timeline_entries, tags, raw_data, page_versions RESTART IDENTITY CASCADE');
}
function makeCtx(overrides: Partial<ResolverContext> = {}): ResolverContext {
return {
config: {},
logger: { info: () => {}, warn: () => {}, error: () => {}, debug: () => {} },
requestId: 'test',
remote: false,
...overrides,
};
}
// ---------------------------------------------------------------------------
// Scaffolder
// ---------------------------------------------------------------------------
describe('Scaffolder', () => {
test('tweetCitation builds canonical form', () => {
const c = tweetCitation({ handle: 'garrytan', tweetId: '1234567890', dateISO: '2026-04-18' });
expect(c).toBe('[Source: [X/garrytan, 2026-04-18](https://x.com/garrytan/status/1234567890)]');
});
test('tweetCitation strips leading @', () => {
const c = tweetCitation({ handle: '@garrytan', tweetId: '1', dateISO: '2026-04-18' });
expect(c).toContain('X/garrytan');
expect(c).not.toContain('@garrytan');
});
test('tweetCitation rejects invalid handle', () => {
expect(() => tweetCitation({ handle: 'not a handle', tweetId: '1' })).toThrow(ScaffoldError);
});
test('tweetCitation rejects non-numeric tweet id', () => {
expect(() => tweetCitation({ handle: 'garrytan', tweetId: 'abc' })).toThrow(ScaffoldError);
});
test('tweetCitation rejects bad date format', () => {
expect(() => tweetCitation({ handle: 'garrytan', tweetId: '1', dateISO: '2026/04/18' })).toThrow(ScaffoldError);
});
test('emailCitation builds deep link and encodes account', () => {
const c = emailCitation({
account: 'garry@ycombinator.com',
messageId: 'abc123def456',
subject: 'Re: Deal',
dateISO: '2026-04-18',
});
expect(c).toContain('garry%40ycombinator.com');
expect(c).toContain('#inbox/abc123def456');
expect(c).toContain('"Re: Deal"');
});
test('emailCitation rejects short message id', () => {
expect(() => emailCitation({
account: 'x',
messageId: 'short',
subject: 'x',
})).toThrow(ScaffoldError);
});
test('sourceCitation with url', () => {
const r = sourceCitation({ source: 'perplexity-sonar', fetchedAt: new Date('2026-04-18') }, { url: 'https://example.com/r' });
expect(r).toBe('[Source: [perplexity-sonar, 2026-04-18](https://example.com/r)]');
});
test('sourceCitation without url', () => {
const r = sourceCitation({ source: 'perplexity-sonar', fetchedAt: new Date('2026-04-18') });
expect(r).toBe('[Source: perplexity-sonar, 2026-04-18]');
});
test('entityLink prefix + slug', () => {
const l = entityLink({ slug: 'people/alice-smith', displayText: 'Alice', relativePrefix: '../../' });
expect(l).toBe('[Alice](../../people/alice-smith.md)');
});
test('entityLink sanitizes display text', () => {
// Newlines → spaces, brackets stripped, trimmed
const l = entityLink({ slug: 'people/alice', displayText: 'A\nli[ce]' });
expect(l).toBe('[A lice](people/alice.md)');
});
test('entityLink rejects invalid slug', () => {
expect(() => entityLink({ slug: 'invalid', displayText: 'x' })).toThrow(ScaffoldError);
expect(() => entityLink({ slug: 'Bad/Slug', displayText: 'x' })).toThrow(ScaffoldError);
});
test('timelineLine builds canonical form', () => {
const l = timelineLine({ dateISO: '2026-04-18', summary: 'Met Alice', citation: '[Source: x, y]' });
expect(l).toBe('- **2026-04-18** | Met Alice [Source: x, y]');
});
});
// ---------------------------------------------------------------------------
// SlugRegistry
// ---------------------------------------------------------------------------
describe('SlugRegistry', () => {
beforeEach(async () => { await reset(); });
test('create on empty brain returns desired slug', async () => {
const reg = new SlugRegistry(engine);
const r = await reg.create({
desiredSlug: 'people/alice-smith',
displayName: 'Alice Smith',
type: 'person',
});
expect(r.slug).toBe('people/alice-smith');
expect(r.exact).toBe(true);
expect(r.disambiguator).toBeUndefined();
});
test('create disambiguates on collision', async () => {
const reg = new SlugRegistry(engine);
await engine.putPage('people/alice-smith', {
type: 'person', title: 'Alice Smith', compiled_truth: 'x', frontmatter: {},
});
const r = await reg.create({
desiredSlug: 'people/alice-smith',
displayName: 'Different Alice',
type: 'person',
});
expect(r.slug).toBe('people/alice-smith-2');
expect(r.exact).toBe(false);
expect(r.disambiguator).toBe(2);
});
test('create throws on collision when onCollision=throw', async () => {
const reg = new SlugRegistry(engine);
await engine.putPage('people/bob', { type: 'person', title: 'Bob', compiled_truth: 'x', frontmatter: {} });
await expect(reg.create({
desiredSlug: 'people/bob',
displayName: 'Bob',
type: 'person',
onCollision: 'throw',
})).rejects.toThrow(SlugRegistryError);
});
test('create throws on invalid slug', async () => {
const reg = new SlugRegistry(engine);
await expect(reg.create({
desiredSlug: 'bad slug with spaces',
displayName: 'x',
type: 'person',
})).rejects.toThrow(SlugRegistryError);
});
test('isFree + suggestDisambiguators', async () => {
const reg = new SlugRegistry(engine);
await engine.putPage('people/charlie', { type: 'person', title: 'Charlie', compiled_truth: 'x', frontmatter: {} });
expect(await reg.isFree('people/charlie')).toBe(false);
expect(await reg.isFree('people/dave')).toBe(true);
const suggestions = await reg.suggestDisambiguators('people/charlie', 3);
expect(suggestions).toEqual(['people/charlie-2', 'people/charlie-3', 'people/charlie-4']);
});
});
// ---------------------------------------------------------------------------
// BrainWriter
// ---------------------------------------------------------------------------
describe('BrainWriter', () => {
beforeEach(async () => { await reset(); });
test('transaction creates entity, returns slug + empty report', async () => {
const writer = new BrainWriter(engine);
const { result, report } = await writer.transaction(async (tx) => {
return tx.createEntity({
desiredSlug: 'people/alice',
displayName: 'Alice',
type: 'person',
compiledTruth: 'Alice is a person.',
});
}, makeCtx());
expect(result).toBe('people/alice');
expect(report.errorCount).toBe(0);
expect(report.touchedSlugs).toEqual(['people/alice']);
});
test('transaction disambiguates slug collision', async () => {
const writer = new BrainWriter(engine);
await writer.transaction(async (tx) => tx.createEntity({
desiredSlug: 'people/eve',
displayName: 'Eve',
type: 'person',
compiledTruth: 'first eve',
}), makeCtx());
const { result } = await writer.transaction(async (tx) => tx.createEntity({
desiredSlug: 'people/eve',
displayName: 'Eve (different)',
type: 'person',
compiledTruth: 'second eve',
}), makeCtx());
expect(result).toBe('people/eve-2');
});
test('addLink creates forward + back-link', async () => {
const writer = new BrainWriter(engine);
await writer.transaction(async (tx) => {
await tx.createEntity({ desiredSlug: 'people/a', displayName: 'A', type: 'person', compiledTruth: 'a' });
await tx.createEntity({ desiredSlug: 'people/b', displayName: 'B', type: 'person', compiledTruth: 'b' });
await tx.addLink('people/a', 'people/b', 'connected', 'knows');
}, makeCtx());
const outbound = await engine.getLinks('people/a');
const inbound = await engine.getBacklinks('people/a');
expect(outbound.map(l => l.to_slug)).toContain('people/b');
expect(inbound.map(l => l.from_slug)).toContain('people/b');
});
test('strict mode rolls back on validator error', async () => {
const writer = new BrainWriter(engine, { strictMode: 'strict' });
writer.register({
id: 'synthetic-fail',
async validate({ slug }) {
return [{ slug, validator: 'synthetic-fail', severity: 'error', message: 'boom' }];
},
});
await expect(writer.transaction(async (tx) => {
await tx.createEntity({
desiredSlug: 'people/ghost',
displayName: 'Ghost',
type: 'person',
compiledTruth: 'x',
});
}, makeCtx())).rejects.toThrow(WriteError);
// Page should not exist after rollback
const page = await engine.getPage('people/ghost');
expect(page).toBeNull();
});
test('lint mode does NOT roll back on validator error', async () => {
const writer = new BrainWriter(engine, { strictMode: 'lint' });
writer.register({
id: 'synthetic-fail',
async validate({ slug }) {
return [{ slug, validator: 'synthetic-fail', severity: 'error', message: 'still writes in lint' }];
},
});
const { result, report } = await writer.transaction(async (tx) => {
return tx.createEntity({
desiredSlug: 'people/lint-test',
displayName: 'Lint',
type: 'person',
compiledTruth: 'x',
});
}, makeCtx());
expect(result).toBe('people/lint-test');
expect(report.errorCount).toBe(1);
const page = await engine.getPage('people/lint-test');
expect(page).not.toBeNull();
});
test('off mode skips validators entirely', async () => {
const writer = new BrainWriter(engine, { strictMode: 'off' });
let called = 0;
writer.register({
id: 'should-not-run',
async validate() { called++; return []; },
});
await writer.transaction(async (tx) => {
await tx.createEntity({ desiredSlug: 'people/no-validator', displayName: 'x', type: 'person', compiledTruth: 'x' });
}, makeCtx());
expect(called).toBe(0);
});
test('validators skip pages with validate:false frontmatter', async () => {
const writer = new BrainWriter(engine, { strictMode: 'strict' });
let called = 0;
writer.register({
id: 'count',
async validate() { called++; return []; },
});
await writer.transaction(async (tx) => {
await tx.createEntity({
desiredSlug: 'people/grandfathered',
displayName: 'Old',
type: 'person',
compiledTruth: 'legacy content without citations',
frontmatter: { validate: false },
});
}, makeCtx());
expect(called).toBe(0);
});
test('setCompiledTruth updates existing page', async () => {
const writer = new BrainWriter(engine);
await writer.transaction(async (tx) => tx.createEntity({
desiredSlug: 'people/update',
displayName: 'Update',
type: 'person',
compiledTruth: 'original',
}), makeCtx());
await writer.transaction(async (tx) => tx.setCompiledTruth('people/update', 'updated'), makeCtx());
const page = await engine.getPage('people/update');
expect(page?.compiled_truth).toBe('updated');
});
test('setFrontmatterField merges into existing frontmatter', async () => {
const writer = new BrainWriter(engine);
await writer.transaction(async (tx) => tx.createEntity({
desiredSlug: 'people/fm',
displayName: 'FM',
type: 'person',
compiledTruth: 'x',
frontmatter: { role: 'founder' },
}), makeCtx());
await writer.transaction(async (tx) => tx.setFrontmatterField('people/fm', 'validate', false), makeCtx());
const page = await engine.getPage('people/fm');
expect(page?.frontmatter?.role).toBe('founder');
expect(page?.frontmatter?.validate).toBe(false);
});
test('registeredValidators lists ids', () => {
const writer = new BrainWriter(engine);
registerBuiltinValidators(writer);
expect(writer.registeredValidators).toEqual(['citation', 'link', 'back-link', 'triple-hr']);
});
});
// ---------------------------------------------------------------------------
// Citation validator (pure, no engine needed for most cases)
// ---------------------------------------------------------------------------
describe('citation validator', () => {
beforeEach(async () => { await reset(); });
async function run(compiled: string, slug = 'concepts/test'): Promise<ReturnType<typeof citationValidator.validate>> {
return citationValidator.validate({
slug,
type: 'concept',
compiledTruth: compiled,
timeline: '',
frontmatter: {},
engine,
});
}
test('passes paragraph with [Source: ...]', async () => {
const findings = await run('Alice was a founder [Source: X/garrytan, 2026-04-18].');
expect(findings).toEqual([]);
});
test('passes paragraph with inline URL', async () => {
const findings = await run('She wrote [an essay](https://example.com/essay) about scaling.');
expect(findings).toEqual([]);
});
test('flags factual paragraph missing citation', async () => {
const findings = await run('Alice raised $5M in Series A from Sequoia.');
expect(findings).toHaveLength(1);
expect(findings[0].severity).toBe('error');
expect(findings[0].validator).toBe('citation');
});
test('ignores headings', async () => {
const findings = await run('# Big header\n## Subhead');
expect(findings).toEqual([]);
});
test('ignores key-value lines', async () => {
const findings = await run('**Status:** Active');
expect(findings).toEqual([]);
});
test('ignores code fences entirely', async () => {
const findings = await run('```\nThis paragraph inside code has no citation and should NOT trigger\n```');
expect(findings).toEqual([]);
});
test('a [Source:] INSIDE a code fence does NOT satisfy the check for surrounding prose', async () => {
const compiled = `Alice raised money.
\`\`\`
[Source: fake]
\`\`\``;
const findings = await run(compiled);
expect(findings.length).toBeGreaterThan(0);
});
test('ignores inline code within paragraph (but paragraph still needs citation)', async () => {
const compiled = 'Alice shipped `gbrain` last week.';
const findings = await run(compiled);
expect(findings).toHaveLength(1);
});
test('ignores pure wikilink bullets (See Also style)', async () => {
const compiled = '- [Alice](../people/alice.md)';
const findings = await run(compiled);
expect(findings).toEqual([]);
});
test('ignores HTML comments', async () => {
const compiled = '<!-- This is a note -->';
const findings = await run(compiled);
expect(findings).toEqual([]);
});
test('ignores blockquotes', async () => {
const compiled = '> quoted content without citation';
const findings = await run(compiled);
expect(findings).toEqual([]);
});
test('empty [Source:] marker does NOT satisfy citation check', async () => {
const findings = await run('Alice raised $5M in Series A from Sequoia [Source:].');
expect(findings).toHaveLength(1);
expect(findings[0].validator).toBe('citation');
});
test('whitespace-only [Source: ] marker does NOT satisfy citation check', async () => {
const findings = await run('Alice raised $5M in Series A from Sequoia [Source: ].');
expect(findings).toHaveLength(1);
});
test('splitParagraphs handles blank-line separation', () => {
const input = 'First para.\n\nSecond para.';
const out = splitParagraphs(input);
expect(out).toHaveLength(2);
expect(out[0].startLine).toBe(1);
expect(out[1].startLine).toBe(3);
});
});
// ---------------------------------------------------------------------------
// Link validator
// ---------------------------------------------------------------------------
describe('link validator', () => {
beforeEach(async () => { await reset(); });
test('normalizeToSlug strips relative prefix + .md', () => {
expect(normalizeToSlug('people/alice.md')).toBe('people/alice');
expect(normalizeToSlug('../../people/alice.md')).toBe('people/alice');
expect(normalizeToSlug('/people/alice')).toBe('people/alice');
expect(normalizeToSlug('companies/acme/labs')).toBe('companies/acme/labs');
});
test('normalizeToSlug returns null for non-slug shapes', () => {
expect(normalizeToSlug('mailto:x@y')).toBeNull();
expect(normalizeToSlug('just-one-component')).toBeNull();
expect(normalizeToSlug('x')).toBeNull();
});
test('isExternalUrl detects http(s)', () => {
expect(isExternalUrl('https://example.com')).toBe(true);
expect(isExternalUrl('http://example.com')).toBe(true);
expect(isExternalUrl('people/alice.md')).toBe(false);
});
test('isNonBrainRef detects mailto/anchor/etc', () => {
expect(isNonBrainRef('mailto:x@y.com')).toBe(true);
expect(isNonBrainRef('#section')).toBe(true);
expect(isNonBrainRef('people/alice.md')).toBe(false);
});
test('flags dangling wikilink', async () => {
const findings = await linkValidator.validate({
slug: 'people/bob',
type: 'person',
compiledTruth: 'Bob met [Alice](../people/alice.md) yesterday [Source: meeting, 2026-04-18]',
timeline: '',
frontmatter: {},
engine,
});
expect(findings.length).toBeGreaterThan(0);
expect(findings[0].severity).toBe('error');
expect(findings[0].message).toContain('people/alice');
});
test('passes when wikilink target exists', async () => {
await engine.putPage('people/alice', { type: 'person', title: 'Alice', compiled_truth: 'x', frontmatter: {} });
const findings = await linkValidator.validate({
slug: 'people/bob',
type: 'person',
compiledTruth: 'Bob met [Alice](../people/alice.md).',
timeline: '',
frontmatter: {},
engine,
});
expect(findings).toEqual([]);
});
test('ignores external URLs', async () => {
const findings = await linkValidator.validate({
slug: 'concepts/x',
type: 'concept',
compiledTruth: 'Read [this](https://example.com/page) for context.',
timeline: '',
frontmatter: {},
engine,
});
expect(findings).toEqual([]);
});
test('flags mailto as warning', async () => {
const findings = await linkValidator.validate({
slug: 'concepts/x',
type: 'concept',
compiledTruth: 'Email [me](mailto:x@y.com).',
timeline: '',
frontmatter: {},
engine,
});
expect(findings.some(f => f.severity === 'warning')).toBe(true);
});
test('ignores links inside fenced code', async () => {
const compiled = '```\n[link](../people/not-real.md)\n```';
const findings = await linkValidator.validate({
slug: 'concepts/x',
type: 'concept',
compiledTruth: compiled,
timeline: '',
frontmatter: {},
engine,
});
expect(findings).toEqual([]);
});
});
// ---------------------------------------------------------------------------
// Back-link validator
// ---------------------------------------------------------------------------
describe('back-link validator', () => {
beforeEach(async () => { await reset(); });
test('no outbound links → no findings', async () => {
await engine.putPage('people/isolated', { type: 'person', title: 'x', compiled_truth: 'x', frontmatter: {} });
const findings = await backLinkValidator.validate({
slug: 'people/isolated',
type: 'person',
compiledTruth: 'x',
timeline: '',
frontmatter: {},
engine,
});
expect(findings).toEqual([]);
});
test('outbound link without reverse → warning', async () => {
await engine.putPage('people/x', { type: 'person', title: 'x', compiled_truth: 'x', frontmatter: {} });
await engine.putPage('people/y', { type: 'person', title: 'y', compiled_truth: 'y', frontmatter: {} });
await engine.addLink('people/x', 'people/y', 'mentions', 'mentions');
// no reverse back-link
const findings = await backLinkValidator.validate({
slug: 'people/x',
type: 'person',
compiledTruth: 'x',
timeline: '',
frontmatter: {},
engine,
});
expect(findings.length).toBe(1);
expect(findings[0].severity).toBe('warning');
expect(findings[0].message).toContain('people/y');
});
test('bidirectional links → no findings', async () => {
await engine.putPage('people/a', { type: 'person', title: 'a', compiled_truth: 'x', frontmatter: {} });
await engine.putPage('people/b', { type: 'person', title: 'b', compiled_truth: 'x', frontmatter: {} });
await engine.addLink('people/a', 'people/b', 'x', 'knows');
await engine.addLink('people/b', 'people/a', 'x', 'knows_back');
const findings = await backLinkValidator.validate({
slug: 'people/a',
type: 'person',
compiledTruth: 'x',
timeline: '',
frontmatter: {},
engine,
});
expect(findings).toEqual([]);
});
});
// ---------------------------------------------------------------------------
// Triple-HR validator
// ---------------------------------------------------------------------------
describe('triple-hr validator', () => {
test('no issues on clean compiled_truth', async () => {
const findings = await tripleHrValidator.validate({
slug: 'people/clean',
type: 'person',
compiledTruth: 'Clean content, no bar in compiled_truth.',
timeline: '- **2026-04-18** | Met',
frontmatter: {},
engine,
});
expect(findings).toEqual([]);
});
test('bare --- in compiled_truth flags warning', async () => {
const compiled = 'Alice did a thing.\n\n---\n\nAnd another.';
const findings = await tripleHrValidator.validate({
slug: 'people/dangerous',
type: 'person',
compiledTruth: compiled,
timeline: '',
frontmatter: {},
engine,
});
expect(findings.some(f => f.message.includes('---'))).toBe(true);
expect(findings[0].severity).toBe('warning');
});
test('--- inside code fence does NOT flag', async () => {
const compiled = 'Content.\n\n```\n---\nshown as output\n---\n```';
const findings = await tripleHrValidator.validate({
slug: 'people/safe',
type: 'person',
compiledTruth: compiled,
timeline: '',
frontmatter: {},
engine,
});
expect(findings).toEqual([]);
});
test('heading in timeline → warning', async () => {
const findings = await tripleHrValidator.validate({
slug: 'people/spill',
type: 'person',
compiledTruth: 'x',
timeline: '## This should not be here\n- **2026-04-18** | event',
frontmatter: {},
engine,
});
expect(findings.some(f => f.message.includes('Heading in timeline'))).toBe(true);
});
test('## Timeline header line in timeline is allowed', async () => {
const findings = await tripleHrValidator.validate({
slug: 'people/ok',
type: 'person',
compiledTruth: 'x',
timeline: '## Timeline\n- **2026-04-18** | event',
frontmatter: {},
engine,
});
expect(findings).toEqual([]);
});
});