mirror of
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1229bec1eb32761648045ca9369d21dae3daf366
377
Commits
| Author | SHA1 | Message | Date | |
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 Sanjay SanthanamandGitHub
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1229bec1eb |
fix(postinstall): cross-platform node shim instead of POSIX shell (#1554)
* fix(postinstall): cross-platform node shim instead of POSIX shell
The postinstall script used POSIX shell syntax ('command -v',
'>/dev/null 2>&1', '1>&2') which Bun's built-in script parser rejects
on Windows. 'bun install' aborted with 'expected a command or
assignment but got: "Redirect"' before gbrain could ever be probed.
Replace with a one-liner 'node -e' shim that:
* uses spawnSync to probe 'gbrain --version' (shell:true on win32 so
the Windows shim/.cmd resolution works)
* on success: runs 'gbrain apply-migrations --yes --non-interactive'
and propagates its exit code
* on failure: writes the same skip message to stderr and exits 0, so
fresh clones (where gbrain isn't on PATH yet) still complete install
POSIX hosts retain the original behavior; Windows hosts now succeed
instead of failing the whole install.
Fixes #1486
* fix(postinstall): move logic to scripts/postinstall.ts to survive Bun Windows script-runner
The `node -e` inline shim still failed on Windows under Bun. Embedding a
program inside the package.json postinstall string lets the lifecycle shell
mangle it: Bun's Windows script-runner expands the `\n` in the hint string
into a REAL newline before node sees it, producing `SyntaxError: Invalid or
unexpected token` and aborting the whole install. `node` is also not
guaranteed present under a Bun install (bun is the guaranteed runtime), and
`shell: win32` re-opened a quoting surface.
Move the logic into a checked-in `scripts/postinstall.ts` run via
`bun run scripts/postinstall.ts`, matching the repo's existing convention of
~19 scripts under scripts/*.ts. This sidesteps all three failure modes:
* `which('gbrain')` from bun does Windows-aware PATH resolution (finds
gbrain / gbrain.exe / gbrain.cmd) with no shell.
* `Bun.spawnSync` with an argv array invokes apply-migrations directly —
no shell, nothing to quote, no `\n` expansion.
* No dependency on `node` being present; bun runs the script.
Behavior is preserved exactly: same `apply-migrations --yes
--non-interactive` command, same issue-218 skip hint, and the same
never-fail-the-install guarantee (every path exits 0). Verified on macOS:
`bun run scripts/postinstall.ts` exits 0 on the skip path (gbrain absent),
on a failing migration, and on a successful migration.
Fixes #1486
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42f3960ba5 |
fix(serve): enable parent-death watchdog on Windows via signal-0 liveness probe (#2049)
The stdio parent-death watchdog was hard-wired to spawnSync('ps'), which
does not exist on Windows. The startup probe therefore failed on every
Windows host, the watchdog was permanently disabled ("watchdog disabled:
ps unavailable"), and an orphaned `gbrain serve` held the PGLite write
lock until reboot. Orphans are especially easy to produce on Windows
because MCP hosts launch the server through a cmd.exe wrapper (.bat) and
killing the wrapper does not kill the bun child.
Windows never re-parents orphans, so the cached process.ppid stays
correct for the process lifetime and the watchdog question inverts from
"did the live PPID change?" to "is the original parent still alive?" --
answered in-process with a signal-0 existence probe (process.kill(ppid, 0),
OpenProcess under the hood). No external binary needed. EPERM counts as
alive. Parent dead reports PID 0, which differs from initialParentPid and
fires the existing shutdown path.
- readLiveParentPid / probeWatchdogAvailable: platform split (ps on
POSIX, signal-0 on win32), exported with a platform test seam so CI on
any OS exercises both branches.
- isPidAlive: shared exported helper.
- Watchdog install guard tightened from `!== 1` to `> 1` so a PID-0
"parent already gone" report cannot install a phantom interval that
compares 0 to 0 forever.
- Disabled-mode log generalized (no longer claims ps is the only
mechanism); existing probe-fail test updated to match.
- New unit suite for the platform defaults (6 tests).
Verified live on Windows 11: serve spawned via a .bat wrapper, wrapper
killed without closing stdin -> bun child exits within ~10s and the
PGLite lock dir is released. Before this change the child survived
indefinitely and every subsequent gbrain invocation timed out waiting
for the lock.
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
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duncanclawandGitHub
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e78f8a1590 | fix(doctor): use active engine for PGLite probes (#1183) | ||
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Eric LoesandGitHub
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79d8c6773e | fix(doctor): treat disabled retrieval reflex as intentional (#2459) | ||
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spiky02plateauandGitHub
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06f58c2b32 |
feat(gateway): config-driven provider_chat_options passthrough (fixes #2577) (#2857)
Add provider_chat_options alongside provider_base_urls and thread it through the gateway config path into chat(). The chat request now deep-merges provider-scoped options and model-scoped overrides into providerOptions keyed by recipe id, preserving existing gateway-built options such as Anthropic cacheControl and leaving absent-config behavior unchanged. This lets operators disable thinking for small-budget hybrid-reasoning utility calls without hardcoding that behavior for every use of those models. |
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fe6838ffac |
docs: add macOS 26.x Tahoe PGLite WASM workaround + native Postgres setup guide (#1671)
PGLite's embedded WASM engine crashes on macOS 26.x (Tahoe) on Apple Silicon during engine initialization. This adds: - A Troubleshooting section in docs/INSTALL.md with step-by-step instructions for using native Homebrew PostgreSQL 17 + pgvector as a workaround - A callout in README.md's Troubleshooting section pointing users to the detailed setup guide Tested on macOS 26.5 (arm64), Bun 1.3.14, gbrain 0.41.29.0, PostgreSQL 17.10 (Homebrew), pgvector 0.8.0. All 102 schema migrations pass. gbrain doctor green. Co-authored-by: Saurav Roy <roysaurav@users.noreply.github.com> |
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6abab9d584 |
fix(facts): durable facts-absorb jobs for one-shot CLI processes + source-scoped fence paths (#2104)
* fix(facts): durable facts-absorb jobs for one-shot CLI processes Every gbrain capture/put from a short-lived CLI enqueued the facts:absorb chat into the in-process FactsQueue, then the exit teardown drained for 1-2s and aborted the in-flight call — logging 'pipeline_error: [chat(...)] The operation was aborted.' on every eligible CLI page write and never extracting facts. cli.ts now marks one-shot processes (everything except serve/jobs/ autopilot); runFactsBackstop's queue mode submits a durable facts-absorb minion job for the long-lived jobs worker instead, with content-hash idempotency and fallback to the in-process queue if submission fails. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * fix(facts): fence-write resolves source-scoped page path writeFactsToFence joined local_path + slug directly, writing main-source fences to the repo ROOT (the default source's tree) and polluting ~/brain with stray root-level fence files. Route through resolvePageFilePath — the same helper the put_page write-through and dream-cycle reverse-render use — so non-default sources fence into .sources/<id>/<slug>.md. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> --------- Co-authored-by: Ragnar Åström <reghar@users.noreply.github.com> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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Ziyang GuoandGitHub
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e0ca74200a | fix(timeline): expose date window filters (#2694) | ||
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9315fd0746 |
fix(conversation-parser): read raw_transcript sidecar + parse plain Speaker A/B lines (#1898)
The parser/doctor/extractor read the polished page body (compiled_truth + timeline) instead of the raw turn-by-turn transcript that meeting pages store in a `raw_transcript` frontmatter sidecar, and the brain's actual raw format (`Speaker A: ...` / `Speaker B: ...`) had no built-in pattern. Result: scan returned no_match / 0 messages and conversation-fact extraction produced 0 segments / 0 facts. - new readConversationBodyForParsing(): prefer the raw_transcript sidecar when present, fall back to compiled_truth + timeline (src/core/conversation-parser/body.ts) - wire it into conversation-parser scan, doctor coverage check, and extract-conversation-facts (drops the old readPageBody helper) - add a built-in `speaker-letter-no-time` pattern for plain `Speaker A:` lines Verified: scan now returns phase=regex_match (speaker-letter-no-time), and the Ben page extracts 61 facts / 7 segments. Tests added; suite green. Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> |
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d33aee843b |
query: filter since/until on effective date, not updated_at (#1706)
since/until range filters were applied against updated_at, so edited-but-old entries leaked into time-bounded queries. Filter on the effective date instead. Closes #1520 Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> |
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mzkaramiandGitHub
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414940204a | ci(release): run verify before build (#2243) | ||
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0cf5596c88 |
v0.42.61.0 chore(release): ten verified community improvements — changelog + version bump (#2890)
Autopilot crash recovery, deterministic atom slugs, takes bootstrap progression, bundled-pack activation, Sonnet 5/Fable 5 pricing, inline citation timelines, pack-driven extraction discovery, book-mirror HTML tables, gateway test-pin, docs sync. Co-authored-by: Sinabina <sinabina@Sinabinas-MacBook-Pro-4.local> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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ff2eb6ff3a |
docs: post-release reference-doc sync for v0.42.59.0 (#2798)
Cross-referenced the v0.42.59.0 five-fix rollup (#2735-#2739) against the reference docs and updated every entry that no longer described current behavior: - KEY_FILES.md: migrate-engine.ts (source-catalog copy + target-aware resume manifest), pglite/postgres bootstrap probe set (timeline_entries.event_page_id), searchTakes/searchTakesVector source scope, think op scope threading through runGather via thinkSourceScopeOpts, new fence-shared.ts entry (escape-aware parseRowCells as escapeFenceCell's inverse). - TESTING.md: one-liners for the three new e2e suites (think-source-isolation-pglite, facts-fence-reconcile-postgres, migrate-engine-sources-postgres) + the new multi-source-bug-class case. - TODOS.md: new v0.42.59.0 follow-ups section (6 items); refreshed the two existing items the wave partially resolved (think gather scope plumbing, #2200 takes_search engine-layer scope). Co-authored-by: Sinabina <sinabina@Sinabinas-MacBook-Pro-4.local> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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maxpetrusenkoagentandGitHub
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323d7d6336 | test(ai): pin gateway tool schema conversion (#2063) | ||
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9ceca6063b |
book-mirror: emit HTML <table valign=top> instead of markdown pipe tables (#2270)
Markdown pipe tables have no vertical-align control, so every renderer except GitHub middle-aligns rows — unreadable when the two columns differ in length. Switch the per-chapter prompt + frontmatter tag to the HTML <table> form with valign=top on every cell (matches the 20 hand-built mirror pages that already render correctly). Co-authored-by: garrytan-agents <agents@garrytan.dev> |
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e538051401 |
feat(extract): recognize inline [Source: ..., YYYY-MM-DD] citations as timeline entries (#2524)
* feat(extract): recognize inline [Source: ..., YYYY-MM-DD] citations as timeline entries gbrain's own quality conventions (skills/conventions/quality.md) require a dated [Source: ..., YYYY-MM-DD] citation on every brain write, so curated pages are full of dated evidence — but extractTimelineFromContent only recognized the timeline-bullet and date-header formats. A page whose dates all live in citations scored zero timeline coverage in brain_score, and doctor pointed users at a formatting convention their own citations already satisfied in spirit. Format 3 files one entry per citation: date and source from the marker, summary from the annotated line with citation markers stripped. Lines already captured by Format 1 are skipped so a timeline bullet carrying its own citation is not double-filed. Bare citations with no surrounding text are ignored. Idempotency is unchanged: persistence already dedupes at the DB layer. * fix(extract): Format 3 citations also in parseTimelineEntries (db-source + ingest path) The first commit only taught extractTimelineFromContent (fs-source) the citation format; the db-source extract and the ingest path parse through parseTimelineEntries in core/link-extraction.ts, which still could not see citations. Same rules as the fs parser: bullet-captured lines skipped, bare citations ignored, invalid calendar dates rejected; the citation source is preserved in the entry detail. --------- Co-authored-by: pabloglzg <186649799+pabloglzg@users.noreply.github.com> |
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7202ebf3da |
fix(takes): bootstrap runs progress through the corpus instead of rescanning the newest slice (#2638)
extractTakesFromPages selected pages by updated_at DESC + LIMIT with no exclusion of pages that already hold takes. The CLI clamps --max-pages to 1000, so on a corpus larger than one run every re-run rescanned the same most-recent 1000: the older tail could never be bootstrapped, and each rescan re-spent Haiku budget producing upsert-identical rows. Seen live on a 2,311-eligible-page brain — a second run would have covered 0 new pages. Covered pages are now skipped by default (NOT EXISTS on takes.page_id), so repeat runs sweep a large corpus in slices; --include-covered restores the full rescan for refresh use. Usage text documents both plus the 1000 clamp. Claude-Session: https://claude.ai/code/session_01FQgByq4aqQq2PP8UHCdnfk Co-authored-by: Paolo Belcastro <p3ob7o@users.noreply.github.com> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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f981f70a2f |
fix(extract): deterministic atom slug — stop cross-day + trailing-dash duplicate atoms (#2482)
extract_atoms minted duplicate atom pages two ways: A. Trailing-dash twins. The local slugger truncated the title at 60 chars with no re-strip, so a cut landing on a hyphen left a trailing dash (`…would-`). The FS-import normalizer (slugifySegment) strips it (`…would`), so the same atom persisted under two slugs and the dedup-by-slug check never collapsed them. B. Cross-day re-mint. The slug used the run date (todayDate()), while the idempotency guard keys on the whole-file source_hash. Append-only sources (chat/transcript exports) grow daily, so the file hash changes, the guard never matches, the source is re-extracted, and each re-mint lands under a new date prefix → a new slug → no upsert → a duplicate. Fix: make the atom slug a deterministic function of stable inputs — `atoms/<source-date>/<stem>-<title-hash>`: - source date is parsed from the source ref (transcript filename / page slug), not the run date, so re-extraction converges on the same slug and putPage upserts instead of duplicating; - the 6-char title hash keeps two atoms whose titles share the first 60 chars on distinct slugs (no silent clobber of a different atom); - the stem routes through the canonical slugifySegment and re-strips a trailing dash, so the two write paths can no longer disagree. The whole-file source_hash batch check is retained only as a cost fast-path (skip re-running the model on an unchanged source); correctness no longer depends on it. Adds a hermetic PGLite regression test (no DATABASE_URL) asserting the source-dated prefix, title-hash suffix, trailing-dash strip, and upsert on re-extraction of a grown append-only transcript. Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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vinsewandGitHub
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34c0ff0c56 |
fix(autopilot): verify lock holder process before exiting (#477)
A lock file can outlive its autopilot process after a crash or forced termination. The previous mtime-only check treated that file as proof that another instance was running, so supervisor restarts could exit repeatedly until the file aged out. Read the holder PID and probe it with signal 0. Keep the lock whenever that process is alive; take over only dead, malformed, empty, or self-owned locks. EPERM remains conservative and counts as alive, preventing two autopilot instances from running concurrently. Add hermetic tests for missing, live, dead, malformed, and empty lock states. |
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e1e1f3bac2 |
feat(extract_atoms): honor pack manifest extractable flag in page discovery (#2615)
Atom-extraction page discovery hardcoded EXTRACTABLE_PAGE_TYPES and ignored the active pack's `extractable: true` flags, so a type declared extractable in the manifest (e.g. `note`) never actually extracted. Closes the D2 TODO the code already flagged (extract-atoms.ts: 'future pack-aware refactor ... pull from the active pack manifest'). Resolve the allowlist as: legacy hardcoded floor UNION the pack's extractable types, MINUS synthesis outputs (atom, concept — extracting from these would loop, since concepts are synthesized from atoms). Mirrors facts/eligibility.ts, which excludes concept the same way. Back-compat: gbrain-base brains keep every legacy target via the union; fail-soft falls back to the legacy floor if the pack can't load. - pure unionExtractableTypes() policy, unit-tested - discoverExtractablePages + countExtractAtomsBacklog resolve from the pack - page-discovery fixture updated (note now extracts; concept stays excluded) Co-authored-by: Paolo Belcastro <p3ob7o@users.noreply.github.com> Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> |
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a12db46350 |
schema: resolve all bundled packs in schema use, not just gbrain-base (#1707)
`schema use` hardcoded `gbrain-base` (and a fixed bundled list), so other bundled packs could not be selected by name. Use the shared BUNDLED_PACK_NAMES set and resolve `<name>.yaml` generically so every bundled pack activates. Closes #1574 Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> |
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9f313db374 |
fix(pricing): add Sonnet 5 and Fable 5 to the canonical chat-pricing table (#2799)
claude-sonnet-5 and claude-fable-5 are GA Anthropic models, but neither was in CANONICAL_PRICING. A brain routing a tier to them (e.g. models.tier.reasoning = anthropic:claude-sonnet-5) ran with cost telemetry blind on that tier: canonicalLookup missed, the budget meter logged BUDGET_METER_NO_PRICING and disabled the gate, and cost views under-reported spend. - model-pricing.ts: anthropic:claude-sonnet-5 at $3/$15 and anthropic:claude-fable-5 at $10/$50. Sonnet 5's launch intro discount ($2/$10 through 2026-08-31) is deliberately not modeled — the table carries standard rates so estimates stay conservative and the entry needs no time-bombed edit when the promo lapses. - takes-quality-eval/pricing.ts: claude-sonnet-5 added to the curated SUPPORTED_MODELS allowlist (a likely judge override). Fable 5 stays out — priced for warn-only consumers, not a budgeted-eval panel model. - model-pricing.test.ts: pin tests for both rows, matching the existing Opus 4.8/4.7 pattern. Drift guards iterate the table; no changes. All derived views (ANTHROPIC_PRICING bare view -> budget-tracker, batch-projection, budget-meter) pick the rows up automatically. Co-authored-by: Paolo Belcastro <p3ob7o@users.noreply.github.com> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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a7b0ae80a9 |
v0.42.60.0 chore(release): eleven verified community fixes — changelog + version bump (#2888)
* v0.42.60.0 chore(release): eleven verified community fixes — changelog + version bump Windows full-sync mass-delete fix, gateway tool-loop resume consolidation (fix-wave A), two source-isolation closes, search-cache exclude-policy keying, and six more verified community fixes. Files the take-writes fail-open source fallback and the #2112 doctor hunk as follow-up TODOs. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs: update reference docs for v0.42.60.0 - KEY_FILES.md: unpin stale KNOBS_HASH_VERSION number in the autocut entry (mode.ts is the single source of truth); document the full-sync reconcile path-separator normalization + mass-delete safety valve (planReconcileDeletes, GBRAIN_ALLOW_MASS_RECONCILE); describe the TTY-gated admin bootstrap token banner (--print-admin-token, env-sourced always hidden) - docs/mcp/DEPLOY.md + docs/tutorials/company-brain.md: bootstrap token is now hidden on non-TTY starts; document GBRAIN_ADMIN_BOOTSTRAP_TOKEN and --print-admin-token for headless deploys Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * chore(docs): regenerate llms bundle after KEY_FILES/deploy-doc sync Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> --------- Co-authored-by: Sinabina <sinabina@Sinabinas-MacBook-Pro-4.local> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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bb417051fe |
fix(search): fold hard-exclude/include prefixes into knobs_hash — stop cross-process cache leak of excluded slugs (#2825) (#2885)
resolveHardExcludes() only ran at DB-query build time (cache miss), so query_cache rows written by a process without GBRAIN_SEARCH_EXCLUDE could be served to a process with it (and vice versa), leaking excluded slugs. hybridSearchCached now resolves the effective hard-exclude list exactly as the engines' query-build path does and folds it (sorted, append-only hx= part) into knobsHash via a new KnobsHashContext.hardExcludes field. KNOBS_HASH_VERSION 11 -> 12: one-time global cache cold-miss on upgrade, refills within cache.ttl_seconds. Co-authored-by: Sinabina <sinabina@Sinabinas-MacBook-Pro-4.local> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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+5
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86962b242b |
fix(gateway): consolidate tool-loop resume + provider fixes (fix-wave A) (#2820)
Collector branch superseding the gateway tool-loop duplicate cluster and adjacent provider fixes. Re-implemented from the best of each PR (deduped by content, not file-overlap); every fix carries test coverage. Gateway tool-loop resume (supersedes #1934 #2062 #2065 #2112 #2274 #2487 #2336 #2257 #2499 #2491, test #2063): - toolLoop now persists the tool-result user turn per round (onToolResultTurn), so a resumed subagent job reloads a balanced transcript instead of dangling assistant tool-calls that non-Anthropic providers reject with AI_MissingToolResultsError. - runSubagentViaGateway reconciles an already-corrupted transcript on resume: it heals every dangling assistant tool-call turn (not just the tail) from the settled subagent_tool_executions rows, re-dispatching idempotent-pending tools and throwing on non-idempotent, mirroring the legacy Anthropic path. Terminal early-return for a transcript that already reached end_turn. - repairToolPairing() is a last-resort normalization at the chat() boundary (from #2336): back-fills error stubs for any assistant tool-call still unanswered (partial turns, provider-duplicated/dropped IDs on local models, length-truncated batches). No-op on balanced input. - toModelMessages is Date-safe (Postgres timestamptz -> ISO via a JSON round trip at the SDK boundary, never a ::jsonb cast; degrades bigint/circular to a string instead of throwing) and drops non-string text blocks reasoning models emit that AI SDK v6 rejects (#2488). Adjacent provider fixes: - Model-aware default max output tokens: thinking-by-default Claude 5 models get headroom (gateway 32000, think 16000) while everything else stays 4096/4000, so DeepSeek/OpenAI subagents don't exceed provider caps (#2614 #2806). - DeepSeek: promote reasoning_content into content when content is empty, via a fail-open recipe fetch shim (#2617). - OpenRouter: map openrouter_api_key (config + env) into OPENROUTER_API_KEY through buildGatewayConfig; register agent.use_gateway_loop, zeroentropy and openrouter keys in KNOWN_CONFIG_KEYS so `config set` accepts them (#2572, config key from #2112). Preserves JSONB (no JSON.stringify into ::jsonb), engine parity, source isolation, and trust-boundary invariants. Verified with the gbrain-pr-test-env consumer matrix (clawlancer/Postgres, gstack + hivemindos/PGLite) baseline-FAIL -> candidate-PASS on the same repro, plus bun run verify (31/31) and 439 targeted unit + e2e tests. Co-authored-by: Sinabina <sinabina@Sinabinas-MacBook-Pro-4.local> Co-authored-by: thomaskong119 <thomaskong119@hotmail.com> Co-authored-by: maxpetrusenkoagent <max.petrusenko.agent@gmail.com> Co-authored-by: brettdavies <brettdavies@users.noreply.github.com> Co-authored-by: ivandebot <187176982+ivandebot@users.noreply.github.com> Co-authored-by: Rafael Reis <rafael.reis@contabilizei.com.br> Co-authored-by: fbal23 <fbal.public@gmail.com> Co-authored-by: javieraldape <javieraldape@users.noreply.github.com> Co-authored-by: David Carolan <david@joyrestart.com> Co-authored-by: Masashi-Ono0611 <masashi.ono.0611@gmail.com> Co-authored-by: spiky02plateau <155588579+spiky02plateau@users.noreply.github.com> Co-authored-by: psam-717 <mphilannorbah@gmail.com> Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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Ziyang GuoandGitHub
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ec3910afc4 | fix(import): route image pages by source (#2718) | ||
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Ziyang GuoandGitHub
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7a275bf0b5 | fix(takes): scope page lookup by source (#2698) | ||
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285cf39f9a |
fix(config): register Life Chronicle keys so the documented enable command works (#2632)
* fix(config): register Life Chronicle keys so the documented enable command works The v0.42.56.0 release notes say `gbrain config set auto_chronicle true`, but the key was never added to KNOWN_CONFIG_KEYS — the documented command fails with 'Unknown config key' and the operator has to discover --force by reading source. Registers 'auto_chronicle' plus the 'chronicle.' prefix (chronicle.tz and future knobs). Same registration class as the v0.42.42.0 spend-controls fix. Regression test pins both. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FQgByq4aqQq2PP8UHCdnfk * fix(config): register takes.bootstrap_enabled too — same unregistered-key class Hit while enabling the takes bootstrap on a live brain: the onboard remediation's documented enable key fails 'Unknown config key' exactly like auto_chronicle did. Registered + pinned by the same regression test. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FQgByq4aqQq2PP8UHCdnfk --------- Co-authored-by: Paolo Belcastro <p3ob7o@users.noreply.github.com> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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Matt GunninandGitHub
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836d83012d | fix(orphans): exclude generated corpus roots (#2068) | ||
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vinsewandGitHub
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d0447a597b |
fix(files): normalize bigint sizes before JSON serialization (#472)
Postgres returns BIGINT file sizes as native BigInt values. Returning those values directly from file_list makes JSON serialization fail, and using them in CLI arithmetic can also throw. Convert size_bytes to Number at the operation boundary and in the CLI display path. File sizes remain exact well beyond any practical attachment size. Add a unit regression that exercises a native BigInt row and proves the operation result is JSON-serializable, plus a real-Postgres E2E assertion for the file_list response. |
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1e1b9a9441 |
test(doctor): pin embedding dims in hidden-by-search-policy — kill the shard-order 1280/1536 flake (#2801)
doctor-hidden-by-search-policy.test.ts hardcodes Float32Array(1536) vectors (basisEmbedding) but lets initSchema size its vector columns from process-global gateway state (getEmbeddingDimensions(), default 1280). Whether the file passes depends on which test files run before it in the shard; adding test files to the repo reshuffles the weight-packed shards, so unrelated PRs trip it (seen on #2800 CI, test (1): every upsertChunks died with 'expected 1280 dimensions, not 1536'). Same fix + rationale as engine-find-trajectory.test.ts and cosine-rescore-column.test.ts, which document this exact class: configureGateway(1536) in beforeAll BEFORE initSchema, resetGateway in afterAll. The suite is now self-sufficient regardless of predecessor state. Not reproducible outside CI's exact shard packing; the pin removes the order-dependence either way. Co-authored-by: Paolo Belcastro <p3ob7o@users.noreply.github.com> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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659b6e9b4d |
fix(import): skip marked.lexer on fence-less pages to avoid bulk-import OOM (#2437) (#2440)
* fix(import): skip marked.lexer on fence-less pages to avoid bulk-import OOM (#2437) extractFencedChunks() ran marked.lexer() on every page body. The lexer allocates transient memory proportional to page size even when there is no code fence to extract — a ~2MB table/doc page spikes ~110MB of heap to produce zero fenced chunks. During bulk import these per-page spikes stack on accumulated chunk/embedding memory and can OOM the worker; the existing try/catch cannot rescue an OOM (process death, not a throw). On a representative brain ~99% of importable pages have no fence, so the lexer pass is pure wasted work there. Add a fast-path that returns early when the body contains no fence marker. Matches both ``` and ~~~ so tilde fenced code still extracts. Scope: this removes the fence-less transient-allocation surface (the observed incident). It does not make marked.lexer safe for pages that DO contain a fence; an input-size/nesting cap is a sensible follow-up. Tests: add two regression cases — tilde-fenced code still extracts, and a large fence-less table page imports with zero fenced chunks. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(import): match marked's \r normalization in the fence fast-path (#2437) Self-review follow-up. marked normalizes `\r\n|\r → \n` before lexing, but the no-fence fast-path probed the raw body with `(^|\n)`. A CR-only (classic-Mac) line-ended page with a real fenced block would be skipped by the guard while marked would have extracted it — a lost fenced_code chunk. Widen the line-start class to `(^|[\r\n])` so the probe agrees with marked. CRLF was already covered. Add a regression test (CR-only fenced page still extracts); it fails on the old `(^|\n)` regex and passes on the fix. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> |
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f15163f727 |
fix(sync): normalize path separators + add mass-delete safety valve to full-sync reconcile (#2828) (#2836)
On a Windows checkout, path.relative yields backslash-separated paths while a page's stored source_path can hold forward slashes (e.g. git-derived). The full-sync reconcile compared the two without normalizing separators, so every file-backed page looked stale and the reconcile deleted the entire source. - Normalize separators on BOTH sides of the membership test (shared .replace(/\/g, '/')), so pages written with either separator match on any OS. - Add a mass-delete safety valve: when a reconcile would sweep > 50% of the file-backed pages a strategy manages on a source with > 20 of them, skip the delete and surface a loud warning instead of silently wiping the brain. GBRAIN_ALLOW_MASS_RECONCILE=1 restores the old behavior. - Factor the decision into pure, exported helpers (planReconcileDeletes, massReconcileAllowed) and unit-test the separator matching, the valve threshold, and the env override without a live engine. Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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bb3376e3b0 |
fix(security): prevent leaking admin bootstrap token to non-TTY stdout (#2625)
* fix(security): #2624 don't print admin bootstrap token on non-TTY (log-leak) serve --http printed the generated admin token in the startup banner unconditionally. In containerized deploys stderr ships to centralized log storage, turning the token into a standing secret in logs. Fail-safe default: the generated token now prints only when stderr is an interactive TTY. Non-TTY starts hide it (--print-admin-token forces it; $GBRAIN_ADMIN_BOOTSTRAP_TOKEN + --suppress-bootstrap-token already existed). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> * fix(security): #2624 banner shows 'from env' before non-TTY hidden guard Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com> |
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5008b287e4 |
v0.42.59.0 chore(release): five verified community fixes — changelog + version bump (#2797)
Rolls up the five fixes merged as #2735 #2736 #2737 #2738 #2739 (issues #2724 #2677 #2723 #2726, plus the think slice of #2200). Co-authored-by: Sinabina <sinabina@Sinabinas-MacBook-Pro-4.local> Co-authored-by: Claude Fable 5 <noreply@anthropic.com> |
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010847c020 |
fix(think): enforce source scope across gather (#2200) (#2739)
Carry the caller's scalar or federated source scope through every think gather stream: hybrid page retrieval, takes keyword/vector retrieval, and graph traversal. Adds source predicates to the takes retrieval methods in both engines. Part of #2200 (the think slice; #2200 stays open as the tracking issue for the remaining by-slug read ops). |
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8e84c5b4a1 |
fix(facts): parse escaped pipes in facts fence round-trips (#2726) (#2738)
parseRowCells now splits on unescaped pipes only and decodes escaped pipes while preserving ordinary backslashes and empty cells, so facts whose text contains literal | survive the fence->DB reconcile instead of being silently deleted. Fixes #2726. |
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68ed7bafa4 |
fix(facts): quarantine ambiguous entity matches (#2723) (#2737)
Bare names resolve only when prefix expansion finds exactly one canonical candidate; ambiguous collisions and low-specificity multi-token fuzzy matches fall through to the guarded holding path instead of confident wrong attribution. Fixes #2723. |
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42ab0956a4 |
fix(migrate): preserve sources and scope resume targets (#2677) (#2736)
migrate --to now copies the complete source catalog before pages (fixes the pages_source_id_fkey failure on multi-source brains), and resume manifests carry an opaque target identity so a checkpoint from one target is discarded for a different target. Fixes #2677. |
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2fca124468 |
fix(schema): unblock pre-v121 schema replay (#2724) (#2735)
Adds the missing timeline_entries.event_page_id forward-reference bootstrap probe + bare-column repair to both engines so pre-v121 brains can replay the current schema and reach migration v121. Fixes #2724. |
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a25209bbb2 |
v0.42.58.0 fix(ai): provider-agnostic gateway — env clobber, base-URL /v1, embedding dims (#1249 #1250 #1292 #2271 #2209) (#2627)
* fix(ai): drop empty-string env values before merge so they can't clobber config keys (#1249) Claude Code injects ANTHROPIC_API_KEY='' to neuter subprocess LLM calls; an unconditional process.env spread let that empty string override a valid config.json key, breaking every gateway op with NO_ANTHROPIC_API_KEY. Filter '' / undefined before the merge; '0' and 'false' are preserved. * fix(ai): normalize native provider base URLs + replace embedding guard with a dims-presence check (#1250, #1292) #1250: createAnthropic/createOpenAI were called with no baseURL, so an env-injected bare host (e.g. ANTHROPIC_BASE_URL without /v1) 404'd. Add a shared resolveNativeBaseUrl and pass a normalized baseURL at all anthropic + openai native sites (google deferred until its suffix is verified). #1292/D6: the user_provided_model_unset guard was structurally unreachable as a no-model check (parseModelId throws on a bare provider) and only ever false-positived for litellm:<model>, silently disabling vector search. Replace it with a real dims-presence check for user-provided/zero-default recipes and delete the dead branch in both consumers. Also stop configureGateway from fabricating a default embedding_dimensions, so 'no dims set' stays honest. * fix(ai): trust user-declared embedding dims for local recipes + litellm /v1 hint (#2271, #2209) #2271: a new trust_custom_dims flag adds a passthrough tier so ollama / llama-server / litellm accept a user-supplied --embedding-dimensions instead of being hard-rejected. Fail-closed for fixed-dim providers (openai/voyage/ zeroentropy) and excludes openrouter (declares dims_options). Register modern ollama embed model names. #2209: litellm setup_hint now states the /v1 path convention and the docs pointer is corrected to docs/integrations/embedding-providers.md. * docs+test(ai): KEY_FILES current-state for provider-agnostic gateway + embed-preflight dims-unset test (#1249, #1250, #1292) * fix(ai): point user_provided_dims_unset remediation at 'gbrain init' (config set rejects it) + coverage Pre-landing adversarial review (P1): the new dims-unset guard told users to run 'gbrain config set embedding_dimensions <N>', which config.ts hard-rejects (it's a schema-sizing field). Both consumer messages now point at 'gbrain init --embedding-dimensions'. Adds: pgvector-cap-still-fires regression for the trust_custom_dims passthrough, and a configureGateway backfill-invariant test. * chore: bump version and changelog (v0.42.57.0) Provider-agnostic plumbing wave: #1249 empty-env clobber, #1250 native baseURL normalization, #1292 embedding dims-presence guard, #2271 trust_custom_dims passthrough, #2209 litellm /v1 hint. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: sync embedding-providers guide for provider-agnostic gateway wave (v0.42.57.0) Post-ship doc drift fix for the v0.42.57.0 AI-gateway wave: - LiteLLM section now names the /v1 base-URL convention (#2209). - Ollama section lists the newly-registered modern embedders qwen3-embed-8b + snowflake-arctic-embed-l-v2, and notes dims-trust for local recipes (#2271). - llama-server section notes gbrain trusts the user-declared dimension (#2271). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: post-ship doc sweep for v0.42.57.0 provider-agnostic gateway wave - KEY_FILES.md types.ts entry: document EmbeddingTouchpoint.trust_custom_dims (#2271 passthrough tier, runs after dims_options + Matryoshka allowlists) - ENGINES.md: embedding design-choice note now names the provider-agnostic gateway delegation instead of the stale OpenAI-only parenthetical - embedding-providers.md: drop an exact-duplicate doctor-8c paragraph - llms-full.txt regenerated (ENGINES.md is inlined in the bundle) Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * docs: apply codex doc-review findings for v0.42.57.0 (base-URL env note, litellm multimodal) - embedding-providers.md OpenAI section: document OPENAI_BASE_URL / ANTHROPIC_BASE_URL bare-host /v1 normalization (#1250 user-facing surface) - TL;DR table: litellm multimodal is backend-permitting (recipe declares supports_multimodal: true, routed via the openai-compat multimodal path), not "no" Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> * test: pin engine-find-trajectory schema to 1536 + stop gateway-state leaks across shard files CI shard 5 failed 7 findTrajectory tests with 'expected 1280 dimensions, not 1536': engine-find-trajectory hardcodes 1536-d vectors but sizes its schema from AMBIENT gateway state in beforeAll — which runs before the legacy-embedding-preload's per-test 1536 restore. A preceding file that ends with a dimensionless configureGateway (facts-extract-silent-no-op) or a bare resetGateway poisons the next fresh initSchema down to 1280-d columns. The new test files in this PR reshuffled shard bin-packing and exposed the trap. - engine-find-trajectory: pin OpenAI/1536 explicitly before initSchema (the pattern bunfig's preload documents) — deterministic regardless of neighbors - facts-extract-silent-no-op, diagnose-embedding-dims, embed-preflight: restore the legacy 1536 pin in afterAll instead of ending reset/dimensionless Reproduced: synthetic dimensionless-gateway file + old victim = the exact 7 CI failures; with the pin = 0. Verified in-process pair runs both orders. --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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058f448b9a |
v0.42.57.0 fix(pglite): incident — never steal a live data-dir lock + corrupted-store recovery hint (#2348) (#2400)
* fix(pglite): never steal the data-dir lock from a live holder (#2348) A busy `gbrain dream`/`embed` holder whose 30s heartbeat lapsed (the JS event loop is blocked during long synchronous WASM imports/CHECKPOINTs) used to get its lock reaped past the steal-grace window. PGLite/WASM is strictly single-writer, so a second OS process then opened the same data dir and corrupted the catalog + pgvector extension state (58P01 / internal_load_library / "type vector does not exist"), recoverable only by wipe+restore. Reap ONLY a dead PID; a live holder is never stolen — a wedged-but-alive or PID-reused holder makes the acquire time out with a message naming the PID. Removes the GBRAIN_PGLITE_LOCK_STEAL_GRACE_SECONDS knob (no longer meaningful). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(pglite): point a corrupted store at reinit-pglite recovery (#2348) classifyPgliteInitError gains a `corrupt` verdict for the 58P01 / internal_load_library / "vector does not exist" / "content_chunks does not exist" signature (beating the generic wasm-runtime match), so an already-damaged store gets actionable recovery (gbrain reinit-pglite / restore a backup) instead of the wrong macOS-WASM hint. Updates KEY_FILES.md to current lock behavior. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * v0.42.55.0 fix(pglite): incident — never steal a live lock + corrupted-store recovery hint (#2348) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * v0.42.56.0 chore: re-bump past #2399 version collision + refresh ownerToken comment #2399 (security wave) claimed 0.42.55.0; take the next slot. Also updates the LockHandle.ownerToken JSDoc to current #2348 behavior (live holders are never reaped, so reap-then-reacquire is dead-holder-only; token guard stays as defense-in-depth). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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646179047a |
v0.42.56.0 feat(chronicle): Life Chronicle — temporal timeline + thought diary + bi-temporal per-entity ontology (#2390) (#2533)
* feat(chronicle): register event + diary page types (#2390) Life Chronicle Phase A.1. Adds `event` (timeline atom) and `diary` (first-person interiority) as temporal-primitive page types under life/events/ and life/diary/, extractable:false — registered in ALL_PAGE_TYPES, both base schema packs, and the inferType prefix table, with parity fixtures. Also lands the chronicle read result types (ChronicleTimelineRow/ChronicleTimelineOpts/LastSeenResult) consumed by Phase A.2. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): event_page_id timeline projection + day/since/last-seen reads (#2390) Life Chronicle Phase A.2. Adds a nullable event_page_id FK to timeline_entries (migration v120; mirrored in schema.sql, pglite-schema, schema-embedded) so a type:event page projects ONE date-index row keyed to its depth page; a partial UNIQUE(event_page_id, date) makes re-extraction with a changed summary an update, not a duplicate. Dual-engine getTimelineForDate / getSince / getLastSeen filter the depth page on deleted_at, hide soft-deleted event projections at READ time (not just doctor), order by event effective_date for intra-day sequence, and honor source scope (sourceIds[] > sourceId). Ops surface as `gbrain day <date> [--week]`, `gbrain since <date> [--kind]`, `gbrain last-seen <entity>`. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): auto-emit extractor — backstop + chronicle_extract job (#2390) Life Chronicle Phase A.3. A put_page backstop (gated on status==='imported', the auto-link/timeline trust gate, and the default-OFF auto_chronicle flag; diary + event pages never eligible) enqueues a chronicle_extract minion job. The job runs the extractor off the write path: deterministic when/who, an injectable LLM judge (default = chat gateway; no-op when no gateway), an all-or-nothing parse barrier (a malformed proposal writes NOTHING), then content-addressed event pages + a timeline projection via the new dual-engine upsertEventProjection (idempotent — re-run yields one event + one projection). New: src/core/chronicle/{eligibility,config,extract-events,backstop}.ts, engine.upsertEventProjection (both engines), the jobs.ts handler + a 10-min timeout. 14 unit tests (eligibility, idempotency, parse barrier, backstop gating + enqueue) green. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): quick-capture for diary + manual events (#2390) Life Chronicle Phase A.5. `gbrain capture` now routes the default slug by type (diary → life/diary/, event → life/events/, else inbox/) and accepts --who/--what/--where/--kind/--depth to assemble the `event:` frontmatter block for `--type event`. User-declared event keys win per-key over the flags. Goes through the existing put_page → write-through → embed path. 6 new unit tests; existing capture tests stay green. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): bi-temporal per-entity ontology on the facts table (#2390) Life Chronicle Phase B.10 — the feature's differentiator. Rather than a parallel store, the open-world per-entity ontology EXTENDS the existing `facts` table (eng-review G1): migration v121 adds dimension/value/value_hash /dim_status columns + a deterministic partial-UNIQUE dedup key + an asof read index. facts already supplies bi-temporal validity, supersession (superseded_by), visibility (remote redaction), confidence, provenance, and embedding — all inherited. Dual-engine methods: mergeOntologyFact (deterministic value_hash dedup → idempotent retry; same value corroborates; a different value forward-closes the prior row's valid_until + superseded_by; a BACKDATED conflicting value is recorded WITHOUT rewriting, surfaced by findOntologyConflicts), getOntology with `--asof` valid-time travel (expired_at + status + validity-window in the predicate so quarantined/superseded never leak), discoverOntologyDimensions, findOntologyConflicts. Novel/LLM-proposed dimensions quarantine; a seed lexicon canonicalizes name drift (job_role → role). 9 unit tests cover the full lifecycle; typecheck pins both engines to the interface. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): ontology ops — get/add/dimensions/contradictions (#2390) Life Chronicle Phase B.11. Exposes the bi-temporal ontology over CLI + MCP (contract-first, auto-generated): `gbrain ontology <entity> [--asof]`, `gbrain ontology-add <entity> <dim> <value>`, `gbrain ontology-dimensions` (meta-ontology rollup), `gbrain ontology-contradictions`. All reads route through sourceScopeOpts. Privacy: ontology_get redacts diary-sourced observations (source under life/diary/) for untrusted (remote) callers. 3 op tests (incl. the remote-redaction path); 47 op-registry/tool-def/description tests stay green. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): agent-context loader — volunteer_chronicle (#2390) Life Chronicle Phase B.12. `loadChronicleContext` hands an agent the recent timeline (last N days) + the validity-resolved current ontology for the entities in play, in one zero-LLM payload, so it orients before acting — the exact gap behind fumbled chronology. Pure composition over getSince + getOntology (no new SQL). Exposed as the `volunteer_chronicle` read op (`gbrain orient [--days] [--entities a,b]`); diary-sourced ontology is redacted for remote callers. 2 loader tests + op-registry green. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): backfill op — sweep existing meetings into events (#2390) Life Chronicle Phase A.8. `chronicle_backfill` (local-only admin op; `gbrain chronicle-backfill [--since] [--limit] [--dry-run]`) lists existing meeting/conversation/calendar pages (source-scoped via listPages), filters through the chronicle eligibility predicate, and enqueues one chronicle_extract job per eligible page so existing brains populate the timeline. --dry-run counts only; per-page enqueue failures are surfaced in `errors`, never swallowed. 2 op tests (dry-run count + enqueue). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): delight — on-this-day + narrative rendering (#2390) Life Chronicle Phase A.6 (delight). Dual-engine getOnThisDay (events from the same month-day in prior years; `gbrain on-this-day [--date]`) reusing the chronicle JOIN shape (deleted-event hiding + source scope). A pure renderTimelineNarrative turns timeline rows into prose; `gbrain day --narrative` returns it alongside the events. 5 tests. (Coverage gap-detection ships with the advisor collectors next.) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): proactive advisor collector (#2390) Life Chronicle Phase A.7. A brain-state advisor collector surfaces two proactive signals in `gbrain advisor`: unresolved ontology conflicts (warn, → `gbrain ontology-contradictions`) and recent meetings with no timeline coverage (info, → `gbrain chronicle-backfill`). Advisory-only (no dispatch_id); runs over MCP too (not workspace-dependent); tolerant of pre-migration brains. 3 tests + advisor-op-gate green. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): doctor chronicle_projection_health probe (#2390) Life Chronicle Phase B.13. An always-run doctor check (keyed off the event_page_id schema, NOT a migration verify-hook) counts timeline projections whose event page is soft-deleted — hidden at read time, surfaced here as a cleanup backlog (`gbrain integrity auto`). Tolerant of pre-migration brains. 1 detection test. (auto_chronicle / chronicle.tz flags already work via getConfig defaults; their docs land with document-release at ship.) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): E1 temporal recall — chronicle-type boost on temporal queries (#2390) Life Chronicle Phase A.4 (E1, ambient temporality). Rather than a separate RRF arm (which needs chunk hydration + risks the fusion path), E1 is a bounded post-fusion boost: applyChronicleTypeBoost lifts `event`/`diary` results on temporal queries, wired INSIDE runPostFusionStages' `recency !== 'off'` branch so it fires ONLY on temporal intent — non-temporal search is bit-for-bit unchanged (proven by 110 passing search-path tests). Bounded ([1.0,1.25]) + floor-gated like the other metadata stages; attribution via `chronicle_boost`. 3 unit tests. (Empirical precision/negative measurement lands with the eval.) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(chronicle): feature eval — gbrain eval chronicle (PRIMARY proof) (#2390) Life Chronicle Phase A.9, the North-Star proof. A deterministic, CI-safe eval (brings its own in-memory PGLite; no LLM, no gateway) builds a synthetic month corpus with a known gold chronology + a planted ontology supersession + a planted conflict, then scores the chronicle layer on six gold tasks: day reconstruction (intra-day order), last-seen exact date, ontology supersession, --asof valid-time travel, contradiction surfacing, and source isolation. `gbrain eval chronicle [--json]` exits 0 iff all pass — currently 6/6. The OFF baseline (raw meeting pages) structurally can't order intra-day events or time-travel ontology; the ON path does. (The live-LLM OFF-vs-ON agent arm + LongMemEval temporal slice are a follow-up; this deterministic bar gates CI.) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(chronicle): pre-landing review — conflict validity, parse-barrier date, remote conflict redaction (#2390) Three bugs caught by the codex pre-landing review on the diff: 1. findOntologyConflicts ignored valid_until, so a normal forward supersession (founder→advisor from two sources) falsely reported as a live conflict. Now restricted to currently-open rows (valid_until IS NULL) in both engines. 2. The extractor parse barrier accepted any when-string >= 4 chars; a non-date value slipped past, wrote the event page, then threw on the projection's ::date cast (partial write). isValidProposal now requires a real parseable date. 3. The ontology_conflicts op had no remote diary redaction (ontology_get did); remote callers now get diary-sourced values filtered, and conflicts that lose their disagreement after redaction are dropped. Three regression tests added; 29 chronicle tests + eval 6/6 green; typecheck clean. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * v0.42.56.0 feat(chronicle): Life Chronicle — temporal timeline + diary + bi-temporal ontology (#2390) Bump VERSION + package.json to 0.42.56.0 and add the CHANGELOG entry for the Life Chronicle feature (#2390, closes duplicate #2388). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(chronicle): register #2390 surfaces with the five CI guard suites (#2390) CI caught five guard tests that pin registration invariants my diff tripped: - schema-bootstrap-coverage: the four v122 facts ontology columns join COLUMN_EXEMPTIONS (facts is migration-created; the partial indexes live inside v122; every reader filters dimension IS NOT NULL — same precedent as facts.claim_metric et al). - no-valid-until-write (R8): both engines' mergeOntologyFact forward- supersession is a deliberate, documented valid_until write authority (engine-layer, dimension IS NOT NULL only; the contradiction probe still never mutates). - doctor-categories: chronicle_projection_health registered under BRAIN_CHECK_NAMES (same class as child_table_orphans). - checkTypeProliferation: the test is now threshold-relative (computes declared from the active pack, seeds declared+6) so base-pack growth can't silently move the fixed threshold again. - schema-cli: gbrain-base page-type count 25 → 27 (event + diary), with assertions on both new types. All 41 guard tests green; typecheck clean. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: file Life Chronicle follow-up TODOs (v0.42.56.0, #2390) Eight deferred items from the CEO/eng review decisions (auto-emit default-flip fast-follow, live eval arm + LongMemEval slice, passive diary consent, interval-splitting, federation, place-as-entity, meta-ontology dashboard, materialized daily pages), each with decision provenance. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(architecture): KEY_FILES entry for the Life Chronicle module (#2390) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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dde1132a29 |
v0.42.55.0 fix(security): dotfile/skills/slug confinement + DCR consent default + schema-lint migration (#418 #419 #245 #1353 #1647 #171 #1385) (#2399)
* fix(security): confine routing dotfiles, skills dir, slugs, and transcription exec Shared src/core/path-confine.ts consolidates the realpath-containment idiom (moved from sources-ops.ts) and adds isTrustedDotfile + isWriteTargetContained. - .gbrain-source (source-resolver) and .gbrain-mount (brain-resolver) walk-up dotfiles are now lstat trust-gated: a symlink, foreign-owned, or world-writable file is refused on multi-user hosts (#418), fail-closed on stat error. - resolveWorkspaceSkillsDir + every skills-dir tier (env, cwd_walk_up, repo_root, cwd_skills, install_path) route through realpath containment so a symlinked workspace/skills can't escape the declared workspace (#419). - resolveSourceId/resolveBrainId realpath both sides of the registered local_path / mount prefix match so a symlinked cwd can't misattribute source/brain. - validateSlug rejects NUL/control, bidi/RTL overrides, backslashes, and URL-encoded path separators at the shared putPage/updateSlug chokepoint; write-through confirms the file path stays within the source tree. - transcribeLargeFile uses execFileSync arg-arrays + fs.rmSync (no shell), so a path with shell metacharacters is never parsed by a shell (#245). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(security): default dynamic-registration clients to authorization_code Self-registered DCR clients (the unauthenticated network registration path) previously defaulted to the client_credentials grant, which bypasses the /authorize consent screen. They now default to authorization_code; an explicit client_credentials request is rejected with invalid_client_metadata unless the operator opts in with the new --enable-dcr-insecure flag. A loud stderr WARNING prints at startup whenever DCR is enabled (#1353). Manual CLI/admin client registration is unchanged (operator-trusted). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(security): schema-lint hardening migration (search_path + view security_invoker) Migration v120 brings existing brains to the same posture as fresh installs: - ALTER VIEW page_links SET (security_invoker = on) on Postgres so the view honors the caller's RLS instead of the owner's (the view-through-RLS bypass). - ALTER FUNCTION ... SET search_path on the gbrain-owned trigger/event functions (both engines, IF EXISTS so engine-only functions are skipped; body untouched, so the load-bearing auto_enable_rls event trigger is unchanged). Closes #171. - Broaden the BYPASSRLS preflight in the historical RLS migration gates to honor superuser and inherited-role BYPASSRLS, so a superuser-connected fresh install no longer aborts (#1385). Fresh-install function definitions in schema.sql / pglite-schema.ts are born-correct (regenerated schema-embedded.ts). scripts/check-search-path.sh is a new CI guard (wired into verify) that fails if a trigger function in the schema base files is added without SET search_path. Postgres-only assertions live in the bootstrap E2E; the PGLite path is covered by test/migration-v120.test.ts. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * v0.42.55.0 fix(security): dotfile/skills/slug confinement, DCR consent default, schema-lint migration Bump VERSION + package.json to 0.42.55.0 and add the CHANGELOG entry for the security-hardening wave (#418 #419 #245 #1353 #1647 #171 #1385). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(security): note the DCR consent default in SECURITY.md (#1353) The "disable client_credentials, only allow authorization_code" guidance is now the built-in DCR default; document the new --enable-dcr-insecure escape hatch. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(todos): add takes_search + code_def to the federated by-slug P1 (#2200) The v0.42.55.0 eng-review codex pass flagged takes_search (holder-allowlist only) and code_def (brain-wide raw SQL over content_chunks) as remaining same-class surfaces. Noted on the existing #2200 P1 follow-up, with the caveat that the #2399 close-list deliberately keeps #1371/#2200 open until this lands. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(security): correct plpgsql alias collision in #1385 BYPASSRLS gate (real-PG) The broadened BYPASSRLS preflight aliased `pg_roles r`, but several RLS DO-blocks already declare `r record` for their backfill FOR loop, so plpgsql resolved `r.oid`/`r.rolbypassrls` to the unassigned record variable → "record \"r\" is not assigned yet" on real Postgres (PGLite tolerated it; the DATABASE_URL-gated e2e jobs are the backstop). Renamed the subquery alias to `pr` at all 10 migrate.ts sites; also broadened the schema.sql base RLS gate the same way (with the `pr` alias) for #1385 consistency on superuser fresh installs, and regenerated schema-embedded.ts. Also fixes a PRE-EXISTING engine-parity bug (confirmed failing on clean origin/master): the relationalFanout shape compared `canonical_chunk_id`, a serial id that diverges between a fresh PGLite engine and a shared Postgres DB (setupDB TRUNCATEs without RESTART IDENTITY). Compare its presence, not the exact value. Validated on real Postgres (pgvector/pg16): migration v120 applies, the v35 RLS backfill runs, and engine-parity + postgres-bootstrap + jsonb-parity are green. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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814258dda6 |
v0.42.53.0 fix(sync,db): #2339 op_checkpoints jsonb double-encode + bug-class sweep + CI guard (#2375)
* fix(sync): op_checkpoints pin write double-encodes jsonb — every sync aborts (#2339) recordCompleted bound JSON.stringify(array) to a $3::jsonb param via postgres.js .unsafe(), double-encoding it into a jsonb string scalar that violates the v119 op_checkpoints_completed_keys_array CHECK — aborting every multi-source sync on real Postgres at the first checkpoint write. PGLite parses the string silently, which is why unit tests stayed green and it shipped. Cast through $3::text::jsonb so the text->jsonb cast parses a genuine array. Adds a DATABASE_URL-gated parity test + a dedicated Postgres CI job so the guard can never silently skip. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(db): sweep positional jsonb double-encode sites + AST CI guard (#2324) Every executeRaw/.unsafe site that bound JSON.stringify(x) to a bare positional jsonb cast double-encodes on real Postgres (same class as #2339). Sweep them all to the text::jsonb form across query-cache, sources-ops, llm-base, calibration-profile, impact-capture, subagent, receipt-write, traversal-cache, symbol-resolver, and the agent/sources commands. Adds scripts/check-jsonb-params.mjs (AST-lite scanner for the positional form the legacy template grep misses, incl. generic-typed calls), wired into check-jsonb-pattern.sh, with a self-test. PGLite's native db.query is not scanned — it parses text to jsonb natively, so the bug can't occur there. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(search,eval): alias-hop injected results carry page_id (contradiction-probe crash) applyAliasHop injected synthetic SearchResults without page_id (the `as SearchResult` cast hid the missing field), so listActiveTakesForPages bound undefined/NaN into ANY($1::int[]) and crashed the whole contradiction probe on real Postgres. Stamp page_id=page.id at the injection site and add a finite-id filter in generateIntraPagePairs as a defensive backstop (mirrors hybrid.ts:63). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(engines): positional jsonb binding rule (text::jsonb vs the double-encode trap) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * v0.42.53.0 fix(sync,db): #2339 op_checkpoints jsonb double-encode + bug-class sweep + CI guard Bumps VERSION + package.json to 0.42.53.0, adds the CHANGELOG entry, and regenerates llms-full.txt. Ships the #2339 sync-abort hotfix, the repo-wide positional jsonb double-encode sweep, the alias-hop contradiction-probe crash fix, and the new positional-form CI guard. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: post-ship sync — jsonb invariant now covers the positional form + new guard CLAUDE.md JSONB invariant + KEY_FILES (sql-query, check-jsonb-pattern, op-checkpoint) now describe the #2339 positional double-encode class, the $N::text::jsonb fix, and the new check-jsonb-params.mjs guard. Regenerates llms-full.txt. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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bb2e88c42a |
v0.42.52.0 fix(reliability): autopilot dead-job storm + supervisor wedge + sync/status/minion reliability (#2194 #2227 #1994 #1737 #1738 #1950 #1984) (#2287)
* test(supervisor): pin LOCK_HELD fence-exit is never counted as a crash (#2227) A duplicate supervisor loses the queue-scoped DB singleton lock (#1849) and exits LOCK_HELD before spawning a worker or emitting 'started'. summarizeCrashes counts only worker_exited, so the fence path is structurally uncountable. Pin it so a future refactor that logs worker_exited on the fence path fails here instead of silently re-introducing the crash-budget breaker-trip loop. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(autopilot): per-source cycle binds FS phases to source.local_path, not global repo (#2194 #2227) A per-source autopilot-cycle inherited the global sync.repo_path as brainDir while stamping DB freshness for source_id — mixed scope. FS phases (sync/lint/extract) ran against the wrong tree, so the failure-cooldown and freshness gates would attribute work to the wrong source. Resolve the source's local_path in the handler (reuse the archive-recheck SELECT) and bind brainDir to it; a pure-DB source gets null (FS phases skip) instead of falling through to the global checkout. Legacy no-source dispatch keeps the global repoPath. Prerequisite for the cooldown/split commits (codex outside-voice #8). Resolves TODOS:634. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(supervisor): detect a live supervisor via the DB lock under split $HOME (#2227) jobs supervisor status + doctor read the HOME-derived pidfile, so a supervisor started under a different $HOME (keeper=/root vs ops=/data) read as 'not running' while healthy — the false signal that drives an operator to spawn a duplicate. Both surfaces now fall back to the queue-scoped DB singleton lock (#1849), the HOME-independent authority, when the pidfile shows nothing. New isLockHolderLive keys on lock freshness (ttl + heartbeat steal-grace), never process.kill, so PID reuse can't false-positive (pid-liveness-alone-pid-reuse). Status surfaces the holder host/pid + recorded concurrency/max-rss from the latest started event. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(supervisor): degraded retry instead of permanent give-up on crash storm (#1994 #2227) max_crashes_exceeded gave up forever, so a transient DB-pooler blip that tripped the soft budget wedged the queue until a human restart (#2227's breaker-trips tail). Crossing the soft budget now enters degraded mode: keep respawning with capped exponential backoff (60s cap — a paced retry, not a hot loop) and emit a loud crash_budget_degraded health_warn. The existing stable-run reset clears the count once a respawn survives >5min, so a recovered DB self-heals. Permanent give-up fires only at a much-higher hard ceiling (maxCrashes × 10), tunable/disablable via GBRAIN_SUPERVISOR_HARD_STOP_CRASHES (0 = never). Resolves TODOS:92. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(autopilot): clamp fan-out to worker concurrency + doctor warning (#2194) Fan-out resolved to 4 (Postgres) regardless of worker --concurrency, so surplus cycles queued behind the worker and raced the stalled-sweeper. Two fixes for the same mismatch: - resolveEffectiveFanoutMax clamps to max(1, concurrency-1) (reserve a slot), gated on a LIVE DB-lock holder so a stale started-audit row can't shrink throughput (codex #9/D5); no live holder → unknown → unclamped base. Escape hatch autopilot.fanout_clamp_to_concurrency. - doctor's autopilot_fanout_concurrency check warns when fan-out exceeds effective slots — the misconfig was silent before. Advisory (started-event concurrency), wired into both doctor surfaces. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(autopilot): per-source failure cooldown — break the dead-job storm (#2194) Only SUCCESS gated dispatch, so a source whose cycle kept failing/timing-out re-fanned-out every 5-min tick forever (200+ dead jobs/24h). Now a failed source backs off with bounded exponential cooldown (10→120min). Read at DISPATCH from minion_jobs dead/failed rows (timeouts/RSS-kills dead-letter via SQL and never run handler code, so a write-only hook would miss them) AND re-checked at CLAIM time in the handler (codex #5: already-queued/retrying jobs). A success clears it (codex #7); null-source rows excluded (codex #6); engine-parity via executeRaw. Disable with autopilot.failure_cooldown_min=0. Fail-open if config/history reads error. Surfaced via fanout_cooldown_skipped + the fanout summary. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(autopilot): split the cycle — per-source phases + one global-maintenance job (#2194 #2227) N per-source cycles each ran the brain-wide global phases (embed-all/orphans/ purge/…) concurrently, thrashing the same rows and taking the worker 4→10GB in <60s → RSS-kill → orphaned stalls. Split them: per-source jobs now run only source-scoped (+ mixed) phases and stamp last_source_cycle_at; a new autopilot-global-maintenance job runs the global phases ONCE per window (idempotency_key + maxWaiting:1 = structural single-flight) and stamps autopilot.last_global_at. This is the codex-endorsed design that replaced the rejected skip-and-stamp-fresh approach (codex #1/#2): no freshness poisoning, no starvation — global work always runs as its own job, never marked done when it wasn't. PHASE_SCOPE is now a runtime partition (GLOBAL ∪ NON_GLOBAL == ALL). last_full_cycle_at still written for doctor/legacy (no longer a global gate). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(doctor): guard nullable engine in supervisor DB-lock fallback (#2227) Follow-up to the supervisor-visibility commit: doctor's engine binding is BrainEngine | null, so the inspectLock fallback must guard on a non-null engine (tsc TS2345). No behavior change — a null engine simply skips the DB-lock probe and falls back to the pidfile reading, as before. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(doctor): categorize autopilot_fanout_concurrency check as ops (#2194) Follow-up to the fan-out/concurrency commit: the doctor-categories drift guard requires every check name in doctor.ts to belong to exactly one category set. Add the new autopilot_fanout_concurrency check to OPS_CHECK_NAMES (infrastructure liveness, alongside wedged_queue/supervisor). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: update KEY_FILES for the autopilot cycle split + supervisor degraded-retry (#2194 #2227) Post-ship document-release: refresh the KEY_FILES current-state entries that drifted — cycle.ts (GLOBAL/NON_GLOBAL phase split + last_source_cycle_at / autopilot.last_global_at), jobs.ts (per-source local_path brainDir, claim-time cooldown, autopilot-global-maintenance handler), supervisor.ts + child-worker (degraded retry instead of permanent give-up; hard ceiling), db-lock.ts (isLockHolderLive), handler-timeouts (new handler). Regenerated llms bundle. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(minions): handleTimeouts counts the timed-out run as a spent attempt (#1737) The per-job timeout_at dead-letter (handleTimeouts) set status='dead' without incrementing attempts_made, unlike the wall-clock and stall dead-letter siblings. It is the FIRST killer to fire for the long-lane handlers (subagent / embed-backfill / autopilot-cycle) because timeout_ms is stamped at submit, so a timed-out long job reported `attempts: 0/N (started: N)`. Mirror the siblings with attempts_made + 1 (terminal, no retry). Safe against double-count: the worker sweep runs handleStalled -> handleTimeouts -> handleWallClockTimeouts sequentially and awaited, each guarded on status='active', so the first to dead-letter excludes the row from the rest. Regression assertions added (test/minions.test.ts + e2e/minions-resilience.test.ts) so the increment can't be silently dropped. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(agent): recognize trailing switches in `agent run`, keep prompts freeform (#1738) parseRunFlags() broke flag parsing at the first positional token, so any flag after the prompt (`gbrain agent run "do X" --detach`) was swallowed into the prompt string and silently ignored. Now the no-value switches --detach/--follow/ --no-follow are hoisted when they trail the prompt, while everything else stays verbatim: an unknown --word is treated as prompt text (no "unknown flag" throw), a --switch mid-prompt is preserved, and `--` suppresses hoisting entirely for a literal escape. Value-flags now reject a missing or flag-shaped value (and --max-turns/--timeout-ms a non-number) instead of capturing undefined/NaN. Contract change: a prompt that starts with or trails an unguarded --word no longer errors; a literal trailing --detach needs `--`. Help text updated; tests revised + extended (test/agent-cli.test.ts). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(sync): honest live-sync status + progress-aware stall-abort (#1950) Finishes the #2255 honest-freshness story for two gaps it left. (a) `gbrain sources status` printed "idle" while a sync proc held the per-source lock (the reported bug). New shared liveSyncStatus() helper in db-lock.ts reads the SAME live-lock signal `gbrain doctor` uses; runStatus now shows "running" (BACKFILL column + a sync_running field in --json) and suppresses the misleading "never synced" warning while a sync is live. One helper, so the surfaces can't drift (doctor/status retrofit tracked as a follow-up). (b) A sync wedged-but-alive kept refreshing its lock heartbeat (it fires on its own timer) and hadn't hit the wall-clock deadline, so only a manual pkill freed it. New in-band stall watchdog keys off FORWARD IMPORT PROGRESS (progress.tick), not the heartbeat: if no file completes for GBRAIN_SYNC_STALL_ABORT_SECONDS (default 900s), it aborts via a controller composed into opts.signal, so the drain returns partial() (last_commit unchanged, next run resumes from the checkpoint) and withRefreshingLock releases the lock. Limits, documented in code: a single file slower than the window trips it; a fully starved event loop won't fire the timer (the wall-clock hard deadline is that backstop). Tests: liveSyncStatus (live/expired/none/per-source) in db-lock-inspect; the resolveStallAbortSeconds env matrix in sync-hard-deadline. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * feat(status): version field + per-section --deadline-ms budget (#1984) `gbrain status` had no version in its JSON envelope and could hang on a slow connection with no way to get a partial answer. Two additions: - version: the StatusReport JSON now carries the local gbrain CLI version so a poller can pin behavior to a build. Thin-client also surfaces remote_version (the brain server's version), and the get_status_snapshot MCP op reports its version for that parity. - --deadline-ms=N / --fast: a shared wall-clock budget. Each section is raced against the REMAINING budget via Promise.race (NOT process-watchdog, which SIGKILLs and can't return partial output), so one slow/hung section can't strand the snapshot — it's marked stale and the rest still return. The envelope gains partial:true + stale_sections[]; exit code stays 0 (a snapshot was produced). Invalid --deadline-ms → exit 2. Tests: parseDeadlineFlag + withSectionDeadline (hermetic), the usage-error exit, version presence in the PGLite envelope, and the op's version key. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(sync): report stall_timeout distinctly + document in-flight limit (#1950) Pre-landing review (codex + adversarial): the stall watchdog aborted opts.signal but the per-iteration abort checks returned partial('timeout'), collapsing a wedge-reap into a user --timeout/SIGINT so JSON consumers couldn't tell them apart. Add a 'stall_timeout' reason (set via a stallAborted flag) on the three import-loop abort sites; deletes/renames-phase and checkpoint sites stay 'timeout'. Sharpen the watchdog comment: the abort is observed BETWEEN files, so a hang inside a single importFile is not interrupted until it returns (TODO: thread a cancellation signal through importFile). * fix(agent): `--` escape suppresses trailing-switch hoisting anywhere (#1738) Pre-landing review: the leading-flag loop breaks at the first positional, so the `escaped` flag only fired for a leading `--`. A `--` placed after a positional left trailing-switch hoisting active, so `agent run note -- body --detach` silently detached and dropped the `--` as junk. Suppress hoisting whenever a literal `--` appears in the prompt. Regression test added. * fix(status): deadline-ms usage-error + scoped stale_sections + cancel losing remote call (#1984) Pre-landing review (codex): (1) bare `--deadline-ms` with no value silently fell through to no-budget/--fast instead of a usage error; (2) thin-client timeout reported both sync+cycle stale even under `--section sync`, naming a section the caller excluded (local path was already correct); (3) the section race abandoned the remote promise locally but didn't cancel the in-flight MCP call — pass the budget as timeoutMs so the losing side actually cancels. Regression test added. * v0.42.52.0 fix(reliability): autopilot dead-job storm + supervisor wedge + sync/status/minion reliability (#2194 #2227 #1994 #1737 #1738 #1950 #1984) Bundles the already-reviewed autopilot/supervisor stabilization (#2194 #2227 #1994: cycle split, per-source failure cooldown, fan-out clamp, degraded supervisor retry, DB-lock live-supervisor detection) with four operational fixes: minion timeout attempt-accounting (#1737), agent-run trailing-flag parsing (#1738), honest live-sync sources status + progress-aware stall watchdog (#1950), and status version + --deadline-ms partial result (#1984). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs: document GBRAIN_SYNC_STALL_ABORT_SECONDS env knob (#1950) Post-ship doc sync (/document-release): add the sync stall watchdog env var to the CLAUDE.md sync-tuning table (Five → Six knobs) + regenerate the llms bundle. * test: quarantine #2249 fanout tests as *.serial (R1 env-isolation) (#2194) The cherry-picked autopilot-fanout-clamp + doctor-autopilot-fanout-concurrency tests mutate process.env.GBRAIN_AUDIT_DIR in beforeEach/afterEach, which the check:test-isolation R1 lint flags (parallel shards load multiple files per process). Rename to *.serial.test.ts (sanctioned quarantine — they run under --max-concurrency=1) instead of restructuring the reviewed test bodies. No logic change; both files stay green (9 tests). Fixes the failing verify CI check. --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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9bf96db807 |
v0.42.51.0 fix(sync): contention-free clock + checkpoint integrity + honest sync freshness (#2255)
* fix(sync): contention-free page-generation clock — sequence swap The page-generation clock backed the query-cache Layer-1 bookmark via a FOR EACH STATEMENT trigger running `UPDATE page_generation_clock SET value=value+1 WHERE id=1`. That took a transaction-length RowExclusiveLock on one tuple, so every concurrent page writer serialized on the prior writer's COMMIT — sync ran at ~0.8 cores regardless of worker count. Swap to a SEQUENCE bumped by nextval() (a microsecond LWLock, never a row lock). The clock's only contract is monotonic advancement on any page INSERT/UPDATE/DELETE; last_value is non-transactional, so rolled-back or concurrent-uncommitted writers only OVER-invalidate the cache (lose a hit), never serve stale. - migration v118: CREATE SEQUENCE + load-bearing 2-arg setval (is_called= true, floor 1, seeded >= old clock and MAX(generation)) + repoint the trigger function body + DELETE query_cache so no old-clock bookmark survives the swap. v107 left immutable. - query-cache-gate.ts: 3 readers -> SELECT last_value FROM page_generation_clock_seq. - schema.sql + pglite-schema.ts (+ regenerated schema-embedded.ts) ship the sequence on fresh install; table + trigger names retained. - tests: clockValue reads last_value; mechanism proof (trigger fn uses nextval not the row UPDATE); rollback-advances-clock safety pin; real PGLite sequence round-trip (is_called gotcha); shape test requires _seq. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(sync): op_checkpoints array-shape guard — CHECK + repair + defensive loader completed_keys is JSONB and the checkpoint loader runs jsonb_array_elements_text over it. A non-array (scalar) value makes that throw "cannot extract elements from a scalar", which takes down the whole UNION load — including the valid op_checkpoint_paths child rows — and loses all checkpoint progress for that key. No current writer produces a scalar, but an older binary / external script / future bug could. Make the corruption class structurally impossible and self-healing: - migration v119: LOCK TABLE (so an out-of-band scalar can't land between repair and constrain; no-op on single-connection PGLite), repair any pre-existing scalar to '[]' (op_checkpoint_paths child rows are the append-only source of truth, so the reset loses nothing), then add the named CHECK (jsonb_typeof(completed_keys) = 'array') via a pg_constraint IF NOT EXISTS guard. A DB-enforced always-on guard — the correct pattern vs a migration verify-hook, which never runs on already-stamped brains. - schema.sql + pglite-schema.ts (+ regenerated schema-embedded.ts) ship the same NAMED inline CHECK so fresh installs match migrated brains and v119 skips the duplicate. - op-checkpoint.ts loader: gate the legacy arm on jsonb_typeof = 'array' so a scalar parent is skipped (children still load) instead of throwing the whole union, and log a specific corruption warning when one is seen. - tests: CHECK rejects a scalar (exactly one constraint, no blob+migration dupe); loader survives a scalar parent and returns the children; v119 repair converts a scalar to '[]'. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(doctor): report actively-running sync via live lock, not stale freshness A slow source that makes partial progress every cycle but never fully completes used to read as permanently "stale" / "never synced" because last_sync_at only advances on a full successful sync. The naive fix (treat recent checkpoint banking as "in progress") is unsafe: a blocked sync banks the good files then writes no anchor, so banking can't tell in-progress from wedged. Use the only honest signal: a LIVE, non-expired per-source sync lock (inspectLock + syncLockId against gbrain_cycle_locks). Every non-skipLock sync holds it and refreshes it; a blocked/failed sync's process has exited (no lock row) and a wedged holder stops refreshing (TTL lapses), so either correctly falls through to the stale path and is NEVER masked. An actively-syncing source (including a never-synced source doing its first sync) counts as synced_recently, preserving the pinned 3-bucket invariant. The lock lookup reuses doctor's existing dynamic db-lock import and swallows any throw (stub engine, pre-lock-table brain) to false, so it can only ADD an in-progress verdict, never suppress a real stale one. Tests (real PGLiteEngine + real lock rows): stale+no-lock -> fail; stale+live-lock -> ok; never-synced+live-lock -> ok; never-synced+no-lock -> fail; expired-TTL lock -> fail (wedged not masked); blocked source with banked checkpoint rows but no lock -> still fail. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(sync): honest --force-break-lock diagnostic when no lock is held --force-break-lock used to emit the same terse "Lock ... is not held (nothing to break)" line and exit 0 even when a sync was genuinely wedged, sending the operator down a dead end — the wedge was not a held lock. Keep rc=0 (breaking a non-existent lock is idempotently successful; flipping the exit code would break automation), but under --force say plainly that nothing was broken and point at the real next step (gbrain sync / gbrain doctor) plus a `wedge_hint` field in --json output. The non-force path is byte-for-byte unchanged. runBreakLock is exported for the test. Tests: force+no-lock -> wedge_hint JSON + human hint, rc 0; non-force+no-lock -> unchanged terse line, no hint. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(doctor): surface the in-progress sync holder in the freshness message Plan-completion follow-up to the BUG 4 live-lock signal: when a source is actively syncing, name the holder (pid + host) in the check message instead of silently folding it into synced_recently. The note is appended only when something is in progress, so steady-state messages stay byte-for-byte unchanged (the pinned exact-message + 3-bucket-invariant tests still pass). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(sync): pre-landing review fixes — monotonic clock seed, scoped CHECK guard Adversarial (codex) review of the implementation diff caught three: - P1 (correctness): the fresh-schema setval was not monotonic. initSchema replays the schema blob, and the unconditional setval(MAX(generation)) could move page_generation_clock_seq.last_value BACKWARD on an already-upgraded brain, letting a stored query_cache bookmark serve stale rows. Seed via GREATEST over the sequence's OWN last_value (+ old table value + MAX(generation)) in all 3 fresh schemas and migration v118, so a replay is idempotent — mirrors the old table's ON CONFLICT DO NOTHING. Pinned by a new monotonic regression test. - P2: v119's CHECK-exists guard keyed on conname only (not globally unique). Scope it to conrelid = 'op_checkpoints'::regclass. - P3: in-progress note ran into the prior sentence in fail/warn doctor messages; separate it with '. '. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * test: make Anthropic/ZE no-key tests hermetic against a dev config key These "no key" tests cleared only ANTHROPIC_API_KEY / ZEROENTROPY_API_KEY from the env, but hasAnthropicKey() and checkZeEmbeddingHealth() also read the key from ~/.gbrain/config.json. On a dev machine whose real config holds a key, the no-key assertions flipped and the tests failed locally (they passed only in key-less CI). Add a shared with-env emptyHome() helper and point GBRAIN_HOME at an empty dir in every no-key path so loadConfig finds nothing — matching the already-hermetic anthropic-key / gateway-probe tests. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore: bump version and changelog (v0.44.1.0) Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * docs(key-files): sync doctor + op-checkpoint entries to v0.44.1.0 truth checkSyncFreshness now reports an actively-running sync via the live per-source lock (names holder pid+host, counts as synced_recently) instead of flagging it stale; loadOpCheckpoint gates the legacy union arm on jsonb_typeof = 'array' so a scalar parent can't take down the whole load, and migration v119's CHECK constraint makes the corruption class structurally impossible. Reference docs describe current behavior only — both entries updated in place, no release-clause appends. Guard + llms freshness test green. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore: re-version to v0.42.51.0 (natural next-off-master) Maintainer override of the queue allocator's leap to 0.44.1.0 (it jumped past in-flight sibling PR claims at 0.42.50/0.43.0/0.44.0). Take the natural next slot in the 0.42.x line above the immediate sibling claim (0.42.50.0); a merge re-bump resolves any collision if a cathedral PR lands first. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * ci(e2e): bound + retry the OpenClaw install so a transient npm hang can't burn the Tier 2 budget The Tier 2 (LLM Skills) job failed at 30m16s — the `npm install -g openclaw@2026.4.9` step hung on a transient npm/registry stall (orphan `npm install openclaw` was still running at cancel time) and consumed the entire 30m job budget that v0.42.50.0 (#2254) introduced. The install normally finishes in under a minute (Tier 2 is ~4m end to end on master), so this is flaky-install infra, not a test failure. Wrap the install in `timeout 120` + a 3-attempt retry loop with an 8-minute step backstop: a hung attempt is killed in 2 min and retried instead of eating the whole job. Same bound-the-hang philosophy as #2254's job timeouts. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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70d5f36db6 |
v0.42.50.0 ci: reliability hardening — cancel-superseded + per-job timeouts + actionlint + hermetic E2E env (#2254)
* ci: cancel superseded runs + per-job timeouts on test.yml & e2e.yml Ports the GH-Actions hygiene gbrain already uses in heavy-tests.yml to the two hot-path workflows. concurrency cancels a superseded run (keyed on PR number for pull_request events — fork-safe — with github.ref fallback for push/scheduled); frees runners and stops a stale-SHA run reporting a flaky failure on an obsolete commit. Per-job timeout-minutes (test matrix 15, verify 12, serial 15, slow-* 12, e2e tier1 20 / tier2 30, trivial jobs 5-10) convert a wedged job from a 6-hour zombie (GitHub's default) into a fast legible fail. fail-fast:false already set. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * ci: add actionlint workflow (rhysd/actionlint v1.7.11, SHA-pinned) Lints workflow YAML on .github/workflows/** changes so a malformed workflow / bad action ref / missing-permission bug is caught before it ships a broken pipeline. gbrain edits these workflows often; cheap preventive guard. Mirrors GStack's actionlint job, SHA-pinned to gbrain's convention. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * ci(e2e): scrub operator/agent env before E2E (hermetic runner) A dev or Conductor shell exports CONDUCTOR_*/MCP_*/OPENCLAW_*/GBRAIN_* overrides that silently change test behavior, making hermetic E2E non-hermetic and its failures unreproducible across machines. run-e2e.sh drops those prefixes before bun starts (denylist — PATH/HOME/TMPDIR/DATABASE_URL survive; GBRAIN_HOME kept for the existing HOME isolation). Adapts GStack's buildHermeticEnv to gbrain's shell runner. Verified: a 78-test e2e file passes with DATABASE_URL surviving + a planted GBRAIN_BRAIN_ID scrubbed. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * v0.42.50.0 ci: reliability hardening — cancel-superseded + per-job timeouts + actionlint + hermetic E2E env Ports GStack's CI-reliability hygiene to gbrain's hot-path workflows: concurrency cancel-in-progress (PR-number keyed), per-job timeout-minutes (no more 6-hour zombie jobs), an actionlint workflow, and an operator-env scrub in run-e2e.sh. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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7968f84077 |
v0.42.49.0 feat(pace): native DB-contention pacing for embed/sync backfills (#2240)
* feat(pace): composable DB-contention pacer primitive createDbPacer/createNoopPacer (concurrency permit + in-band EWMA + jittered cooperative sleep, abort-throws, fail-open) + named pace-mode bundles (env>config>bundle, default off) + shared embed-backfill lock key. * feat(embed): wire DB-pacing into embed paths + single-flight + bounded keyset re-entry embedStaleForSource + CLI embedAllStale/embedAll lower worker count to the resolved cap and observe()/pace() their DB ops; embed job + embed-backfill handler resolve env>config>bundle; CLI --pace flags; --background carries overrides into the job payload; single-flight via shared per-source lock; budget-timer re-arm around paced sleeps; EmbedResult.pacing telemetry. * feat(sync): shared DB-pacer permit across parallel worker engines One pacer spans the per-worker PostgresEngines (the multi-pool permit case); observe() import writes, pace() between files, dispose on all exit paths. * docs(pace): CLAUDE.md Pace Mode section + regenerated llms bundle * fix(pace): pre-landing review fixes (Codex P1/P2) - never unref() the cooperative-sleep timer (could exit mid-sleep) - pace() excludes the wall-clock budget + re-arm after each sleep - pacing only lowers concurrency, never raises above an operator cap - serialized job pace resolves at config tier so GBRAIN_PACE_* still wins - --pace-max-concurrency consumes its value token * chore: bump version and changelog (v0.42.48.0) Native DB-contention pacing for embed/sync backfills. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * chore: bump version to v0.42.49.0 Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |
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7ea92d602c |
v0.42.48.0 feat(durability): auto-harden brain repos for git durability on PAT+URL (#2241)
* feat(git): divergence-safe pull, push-probe, default-branch detection for brain durability Add GIT_ENV_AUTH + divergenceSafePull (skip-on-dirty, conflict-abort-clean, never-mid-rebase), detectDefaultBranch, pushProbe, and an env-gated GBRAIN_GIT_ALLOW_FILE_TRANSPORT escape hatch. Export GIT_ENV. pullRepo's --ff-only contract is unchanged. * feat(durability): brain-repo hardening core (hook, helper, cron, PAT, AGENTS rules) hardenBrainRepo/unhardenBrainRepo: local untracked post-commit hook + committed brain-commit-push.sh (one shared push-retry template), repo-scoped credential with existing-helper reuse, push-probe verify, active-resolver-file rules with taxonomy from _brain-filing-rules.json, minimal DB-free pull cron. PAT redaction via redactSecretsInText. * feat(sources): harden/pull/unharden commands + auto-harden on add --url sources harden/pull/unharden subcommands; --pat-file/--no-harden on add; auto-harden managed clones on add; unharden-before-remove. cli.ts pre-connect early-exit for DB-free 'sources pull --path' (the cron entry, never opens PGLite). * test(durability): unit + integration coverage for brain-repo durability git helpers, core harden/unharden, hook+helper E2E (real background push), cron generators. 41 tests across 4 files. * chore: bump version and changelog (v0.42.48.0) Brain-repo git durability: auto-harden a brain's working tree (local auto-push hook, committed commit-push helper, always-on agent rules, DB-free pull cron, repo-scoped credential, push-probe verify) the moment gbrain gets a PAT + URL. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> * fix(sources): route harden exit code through setCliExitVerdict A raw process.exitCode write is zeroed by the owned-verdict flush-exit (#2084 PGLite-Emscripten pollution defense); cli-exit-verdict-pin guard caught it. Use setCliExitVerdict(3) so 'sources harden' actually reports needs-attention to cron/automation. * docs: document brain-repo durability (KEY_FILES + multi-source guide) KEY_FILES: extend git-remote.ts entry (divergenceSafePull, pushProbe, detectDefaultBranch, GIT_ENV_AUTH, GBRAIN_GIT_ALLOW_FILE_TRANSPORT) + add brain-repo-durability.ts/sources-harden.ts entry. multi-source-brains.md: add a Durability (auto-harden) how-to covering sources harden/pull/unharden, --pat-file, the guarantees, and the security posture. --------- Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com> |